# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tbxA 99 2.10e-02 a.4.5.48 106748 2a61A 145 3.09e-02 1yyvA 131 3.92e-02 2f2eA 146 7.92e-02 1xmaA 145 2.34e-01 1r7jA 95 2.56e-01 a.4.5.49 104836 2fbiA 142 4.76e-01 1ub9A 100 4.94e-01 a.4.5.28 99159 2g7uA 257 5.86e-01 1p4xA 250 6.73e-01 a.4.5.28,a.4.5.28 87784,87785 1hw1A 239 8.92e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 3rubS 123 1.08e+00 1rboC d.73.1.1 39616 1z7uA 112 1.24e+00 1zhvA 134 1.69e+00 1yrgA 385 2.02e+00 1yrgA c.10.1.2 30854 1okrA 123 2.30e+00 a.4.5.39 93269 1a8y 367 2.56e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1adoA 363 2.76e+00 1fbaA c.1.10.1 29124 1cvrA 435 2.81e+00 1cvrA b.1.18.12,c.17.1.2 21949,31006 1k61A 60 2.85e+00 a.4.1.1 77270 1o82A 70 2.86e+00 a.64.2.1 92630 2ca6A 386 3.00e+00 1sfxA 109 3.51e+00 a.4.5.50 105505 2fswA 107 3.65e+00 1sxrA 183 3.76e+00 d.118.1.1 106101 1zbfA 142 4.98e+00 1e68A 70 5.10e+00 1e68A a.64.2.1 18144 1stzA 338 5.30e+00 a.4.5.51,d.110.2.3 106009,106010 2c5uA 375 5.53e+00 1gxrA 337 5.83e+00 b.69.4.1 70722 1bouB 302 5.88e+00 1bouB c.56.6.1 33859 1lj9A 144 6.32e+00 a.4.5.28 78035 1v30A 124 6.73e+00 1q1hA 110 6.85e+00 a.4.5.41 95580 1h1yA 228 7.24e+00 c.1.2.2 76506 1zaiA 363 7.53e+00 1fnd 314 7.58e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 2eshA 118 7.90e+00 1seiA 130 8.19e+00 1seiA d.140.1.1 41463 1zip 217 8.38e+00 1zin c.37.1.1,g.41.2.1 31916,45179 2utgA 70 8.44e+00 1utg a.101.1.1 18814 1fnc 314 8.55e+00 1fnc b.43.4.2,c.25.1.1 25627,31517 2bgcA 238 8.94e+00 1jgsA 138 8.96e+00 a.4.5.28 66683 2esnA 310 9.18e+00 2agaA 190 9.56e+00 1zin 217 1.00e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1utg 70 1.01e+01 1utg a.101.1.1 18813 1sig 339 1.06e+01 1sig a.177.1.1 19068 1ir21 140 1.07e+01 1yl36 82 1.13e+01 1hl2A 297 1.14e+01 c.1.10.1 83581 2d13A 227 1.15e+01 1bx1A 314 1.19e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1qqcA 773 1.26e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1yrnB 83 1.28e+01 1akhB a.4.1.1 15986 1dofA 403 1.29e+01 1c3cA a.127.1.1 19429 1bv1 159 1.33e+01 1bv1 d.129.3.1 41313 1fm4A 159 1.37e+01 1bv1 d.129.3.1 76186 1faaA 124 1.40e+01 1erv c.47.1.1 32738 2c3nA 247 1.52e+01 1mqsA 671 1.60e+01 e.25.1.1 79414 1nal1 297 1.61e+01 1nal3 1r6xA 395 1.64e+01 b.122.1.3,c.26.1.5 97167,97168 1bg1A 722 1.65e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1pdz 434 1.68e+01 4enl c.1.11.1,d.54.1.1 29215,38859 1jug 125 1.70e+01 3lzt d.2.1.2 36587 3fapB 94 1.77e+01 1nsgB a.24.7.1 16612 1p3jA 217 1.78e+01 c.37.1.1,g.41.2.1 94022,94023 1v1hA 103 1.79e+01 b.83.1.1,h.1.17.1 108243,108244 1nrwA 288 1.81e+01 c.108.1.10 86128 1xw5A 217 1.92e+01 2bz1A 196 1.96e+01 2c4jA 218 1.97e+01 1y2qA 143 2.06e+01 1o97C 264 2.07e+01 c.26.2.3 81232 1jflA 228 2.08e+01 c.78.2.1,c.78.2.1 71656,71657 2ganA 190 2.10e+01 1b5l 172 2.11e+01 1b5l a.26.1.3 16900 1euoA 180 2.23e+01 1np1A b.60.1.1 27163 1peeA 180 2.24e+01 b.60.1.1 104126 1s1fA 406 2.24e+01 1ois 223 2.30e+01 1a36A e.15.1.1 43267 1gggA 226 2.31e+01 1lst c.94.1.1 35817 1x79B 112 2.36e+01 2cohA 202 2.37e+01 1yewA 382 2.45e+01 2fbhA 146 2.51e+01 1or7C 90 2.52e+01 a.180.1.1 87336 1g1sA 162 2.53e+01 d.169.1.1,g.3.11.1 65100,65101 1wdcA 64 2.53e+01 1wdcA 1ur4A 399 2.54e+01 1vlwA 217 2.58e+01 c.1.10.1 108868 1gk8I 140 2.66e+01 d.73.1.1 65242 1dfaA 454 2.71e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1souA 194 2.71e+01 c.124.1.6 105858 1s722 50 2.85e+01 1vqo2 50 2.85e+01 1wi5A 119 2.91e+01 1zy9A 564 2.93e+01 1pm1X 180 2.95e+01 b.60.1.1 104189 1s4nA 348 2.99e+01 c.68.1.16 98501 1g1tA 157 3.09e+01 d.169.1.1,g.3.11.1 65104,65105 1kevA 351 3.16e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1z91A 147 3.22e+01 1gkpA 458 3.26e+01 b.92.1.3,c.1.9.6 70231,70232 1m5yA 408 3.37e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1r1tA 122 3.44e+01 a.4.5.5 104769 1esl 162 3.48e+01 1esl d.169.1.1,g.3.11.1 42353,44225 1nar 290 3.59e+01 1nar c.1.8.5 28988 2lisA 136 3.65e+01 1lis a.19.1.1 16405 1mkmA 249 3.83e+01 a.4.5.33,d.110.2.2 79242,79243 1yz1A 174 3.84e+01 1mk4A 157 3.88e+01 d.108.1.1 84979 1g7sA 594 3.89e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1yh2A 175 3.96e+01 1u7lA 392 3.97e+01 1vor3 53 3.98e+01 1e94F 449 4.07e+01 1do0A c.37.1.20 32443 2b0lA 102 4.23e+01 1wa3A 205 4.27e+01 1vdeA 454 4.28e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1ursA 402 4.37e+01 c.94.1.1 99833 1erjA 393 4.43e+01 1erjA b.69.4.1 27660 1ddf 127 4.47e+01 1ddf a.77.1.2 18423 1efnB 152 4.47e+01 1efnB d.102.1.1 40699 1avyA 74 4.52e+01 1avyB h.1.17.1 45656 1s3jA 155 4.53e+01 a.4.5.28 98437 2gr8A 99 4.56e+01 1fkqA 124 4.56e+01 3lzt d.2.1.2 36601 7fd1A 106 4.61e+01 1a6l d.58.1.2 38953 2g0uA 92 4.64e+01 1k78A 149 4.77e+01 a.4.1.5,a.4.1.5 68255,68256 2b4gA 317 4.79e+01 1lyqA 104 4.88e+01 b.1.18.17 78302 2c0cA 362 4.93e+01 1fxxA 482 4.95e+01 1fxxA c.55.3.5 33726 2cujA 108 4.97e+01 1lis 136 5.03e+01 1lis a.19.1.1 16406 1wdnA 226 5.07e+01 1lst c.94.1.1 35816 1oneA 436 5.11e+01 4enl c.1.11.1,d.54.1.1 29200,38844 2b0tA 738 5.14e+01 1ummA 172 5.20e+01 a.3.1.1 107958 1xriA 151 5.22e+01 1tkeA 224 5.30e+01 1rw1A 114 5.41e+01 1cei 94 5.43e+01 1cei a.28.2.1 16939 2d1uA 104 5.44e+01 8rucI 123 5.44e+01 1rboC d.73.1.1 39629 1b9mA 265 5.51e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1yzbA 182 5.68e+01 2fj6A 82 5.68e+01 1sjdA 368 5.74e+01 c.1.11.2,d.54.1.1 105632,105633 1xn7A 78 5.74e+01 1vf5G 37 5.79e+01 f.23.26.1 100587 2cxcA 144 5.82e+01 1czj 111 5.95e+01 3cyr a.138.1.1 19663 1umnA 165 5.97e+01 a.25.1.1 99607 1xqaA 113 5.97e+01 2al2A 436 5.99e+01 1rwxA 178 6.04e+01 2a6tA 271 6.04e+01 1t6t1 118 6.14e+01 4enl 436 6.18e+01 4enl c.1.11.1,d.54.1.1 29202,38846 1din 236 6.21e+01 1din c.69.1.9 34682 1s5lK 37 6.23e+01 2axtK 37 6.23e+01 1whmA 92 6.29e+01 1ywlA 96 6.32e+01 3proC 166 6.37e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1zs4A 83 6.42e+01 1dpuA 99 6.49e+01 1dpuA a.4.5.16 16150 2c8sA 172 6.53e+01 1w8xM 83 6.66e+01 2a6hD 1524 6.67e+01 1pqxA 91 6.84e+01 d.267.1.1 104296 1r1uA 106 6.86e+01 a.4.5.5 104771 1z72A 225 6.90e+01 1exqA 154 6.92e+01 1b9dA c.55.3.2 33646 1vcvA 226 6.99e+01 1sc3A 178 7.11e+01 c.17.1.1 105416 1b9oA 123 7.21e+01 3lzt d.2.1.2 36597 1xewY 172 7.21e+01 2anwA 241 7.23e+01 1o54A 277 7.25e+01 c.66.1.13 92482 1yovA 537 7.25e+01 1wddS 128 7.28e+01 1j97A 211 7.31e+01 1f5sA c.108.1.4 62753 1a4yB 123 7.37e+01 7rsa d.5.1.1 37296 1zuoA 186 7.39e+01 1qisA 396 7.40e+01 1ajsA c.67.1.1 34284 1jenA 267 7.41e+01 1jenA 1noyA 388 7.47e+01 1clqA c.55.3.5 33713 1jl0A 334 7.48e+01 1jenA d.156.1.1 63155 1yodA 30 7.49e+01 1l7mA 211 7.55e+01 c.108.1.4 73664 1bia 321 7.55e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1ny1A 240 7.55e+01 c.6.2.3 86395 1zi8A 236 7.58e+01 2cdcA 366 7.65e+01 1r5lA 262 7.67e+01 a.5.3.1,c.13.1.1 97099,97100 1mdwA 328 7.73e+01 d.3.1.3 84934 1g8fA 511 7.73e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1z0xA 220 7.76e+01 2czrA 226 7.78e+01 1bjaA 95 7.86e+01 1bjaA a.4.5.9 16122 1fmeA 28 7.87e+01 k.12.1.1 59878 1m6yA 301 7.95e+01 a.60.13.1,c.66.1.23 78716,78717 1wdjA 187 8.00e+01 1tfuA 157 8.01e+01 c.26.1.3 106859 1io2A 213 8.17e+01 1ekeA c.55.3.1 62612 1hqz1 141 8.23e+01 1y4jA 284 8.24e+01 1y8oA 419 8.31e+01 1xnpA 202 8.35e+01 2al1A 436 8.38e+01 1jr5A 90 8.44e+01 a.150.1.1 67113 1gs5A 258 8.56e+01 c.73.1.2 70395 2a2pA 129 8.60e+01 1u3aA 189 8.63e+01 2d0eA 407 8.65e+01 1e79I 50 8.67e+01 1e79I a.137.8.1 19647 1k77A 260 8.72e+01 c.1.15.5 72096 1wr2A 238 8.91e+01 1in6A 334 8.93e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1xyn 178 8.99e+01 1axkA b.29.1.11 24322 2eveA 157 8.99e+01