# List of top-scoring protein chains for T0326.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ghrA 302 3.79e-54 1wl8A 189 7.09e-20 1gpmA 525 1.30e-17 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2a9vA 212 3.55e-16 1o1yA 239 7.55e-09 c.23.16.1 86554 1qdlB 195 1.94e-08 1qdlB c.23.16.1 31437 1m6vB 382 2.22e-07 c.8.3.1,c.23.16.1 74542,74543 1jdbC 382 2.38e-07 c.8.3.1,c.23.16.1 30756,31433 1cs0B 382 2.41e-07 1c3oB c.8.3.1,c.23.16.1 30740,31417 1t36B 382 2.64e-07 c.8.3.1,c.23.16.1 106307,106308 1i7qB 193 4.77e-07 1qdlB c.23.16.1 61902 1i1qB 192 1.33e-06 1qdlB c.23.16.1 61544 1keeB 382 3.50e-06 c.8.3.1,c.23.16.1 68498,68499 1a9xB 379 4.08e-06 1c3oB c.8.3.1,c.23.16.1 30732,31409 1c30B 382 2.41e-05 c.8.3.1,c.23.16.1 30736,31413 1q7rA 219 1.35e-03 c.23.16.1 96054 1h72C 296 4.86e-03 d.14.1.5,d.58.26.1 60712,60713 1g2iA 166 8.20e-03 1g2iA c.23.16.2 31438 1oi4A 193 2.59e-02 c.23.16.2 87047 1r9gA 216 6.06e-02 c.23.16.1 97258 1s1mA 545 7.54e-02 c.23.16.1,c.37.1.10 105201,105202 1kxjA 205 2.29e-01 c.23.16.1 73153 1k9vF 201 2.50e-01 c.23.16.1 68365 1apyA 162 4.26e-01 1apyA d.153.1.5 42004 1vcoA 550 5.52e-01 c.23.16.1,c.37.1.10 108508,108509 1vcnA 550 5.60e-01 c.23.16.1,c.37.1.10 108506,108507 1pe0A 197 1.10e+00 c.23.16.2 88045 1p5fA 189 1.13e+00 c.23.16.2 94142 1j42A 189 1.18e+00 c.23.16.2 90837 1pdvA 197 1.21e+00 c.23.16.2 88036 2acvA 463 1.33e+00 2acwA 465 1.33e+00 1qcrC 378 2.09e+00 1be3C f.32.1.1,f.21.1.2 75931,75932 1ppjC 379 2.10e+00 f.32.1.1,f.21.1.2 104256,104257 1ka9H 200 2.39e+00 c.23.16.1 77308 1n4aA 252 3.43e+00 c.92.2.2 85317 1n2zA 245 3.47e+00 c.92.2.2 79865 1ykfA 352 3.85e+00 1pedA b.35.1.2,c.2.1.1 24757,29773 1xbwA 109 3.97e+00 2fexA 188 5.64e+00 1krhA 338 6.15e+00 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1kkoA 413 8.28e+00 c.1.11.2,d.54.1.1 68675,68676 1s5aA 150 8.49e+00 d.17.4.10 98525 1ox6A 555 8.74e+00 c.1.2.1,c.23.16.1 87505,87506 2b4wA 315 8.82e+00 1rm6A 769 9.06e+00 1trjA 314 9.40e+00 2abwA 227 1.16e+01 1bqyA 234 1.40e+01 5ptp b.47.1.2 26332 1t27A 271 1.44e+01 d.129.3.4 99075 1cksA 79 1.48e+01 1puc d.97.1.1 40683 1ep0A 185 1.61e+01 1dzrA b.82.1.1 28080 1m6jA 261 1.66e+01 c.1.1.1 78693 1uw5A 270 1.66e+01 d.129.3.4 100075 1kcmA 270 1.69e+01 d.129.3.4 72300 1ki1B 352 1.73e+01 a.87.1.1,b.55.1.1 72497,72498 1gp1A 198 1.78e+01 1gp1A c.47.1.10 33059 1ovzA 207 1.91e+01 b.1.1.4,b.1.1.4 87473,87474 1uctA 218 2.09e+01 b.1.1.4,b.1.1.4 88467,88468 1cb0A 283 2.10e+01 1cb0A c.56.2.1 33790 1c25 161 2.11e+01 1c25 c.46.1.1 32698 1zc4B 120 2.12e+01 1p8cA 145 2.14e+01 a.152.1.2 94354 1o51A 114 2.15e+01 d.58.5.4 92480 1zc3B 113 2.24e+01 1b66A 140 2.28e+01 1b66A d.96.1.2 40657 1vhqA 232 2.37e+01 c.23.16.2 100696 1oahA 519 2.38e+01 a.138.1.3 86736 1ti6B 274 2.45e+01 b.3.5.1,d.58.1.5 106976,106977 1zq1A 438 2.48e+01 1lssA 140 2.56e+01 c.2.1.9 74246 1pk5A 248 2.60e+01 a.123.1.1 88139 1zh7A 243 2.77e+01 1egiA 147 2.88e+01 1eggA d.169.1.1 42331 1fcqA 350 2.90e+01 c.1.8.9 65006 1uj2A 252 2.90e+01 c.37.1.6 99452 1oy1A 228 2.93e+01 c.23.16.2 87548 1xrjA 261 2.97e+01 1gt0D 80 3.08e+01 a.21.1.1 76337 1ehs 48 3.12e+01 1ehs g.2.1.1 43998 1e0rB 159 3.19e+01 1a6dA c.8.5.2 30824 1ydmA 187 3.20e+01 1e87A 118 3.24e+01 1b6e d.169.1.1 42327 1o4xB 88 3.35e+01 a.21.1.1 92472 1xxxA 303 3.52e+01 1tz7A 505 3.54e+01 1llc 325 3.55e+01 1hyhA c.2.1.5,d.162.1.1 30176,42143 2belA 283 3.67e+01 1zosA 230 3.67e+01 1zoiA 276 3.67e+01 1tjrA 261 3.74e+01 1bjaA 95 3.79e+01 1bjaA a.4.5.9 16122 1kzhA 555 3.79e+01 c.89.1.1 73361 1i1sA 96 3.80e+01 1bjaA a.4.5.9 16124 1rd5A 262 3.83e+01 1h67A 108 3.87e+01 a.40.1.1 65643 1vzsA 76 3.87e+01 f.45.1.1 108972 2cwcA 303 4.13e+01 1wb4A 297 4.30e+01 1gkkA 297 4.33e+01 c.69.1.2 65248 1nsoA 107 4.36e+01 b.50.1.1 80713 1gkrA 458 4.37e+01 b.92.1.3,c.1.9.6 70251,70252 1es0A 190 4.37e+01 1iakA b.1.1.2,d.19.1.1 21643,38217 1f3jA 182 4.41e+01 1iakA b.1.1.2,d.19.1.1 21645,38219 1ku1A 230 4.43e+01 a.118.3.1 72996 1u9cA 224 4.76e+01 1z63A 500 4.76e+01 1fm5A 199 4.87e+01 1fm5A d.169.1.1 42330 1g7yA 253 5.05e+01 1led b.29.1.1 24110 2iadA 194 5.33e+01 1iakA b.1.1.2,d.19.1.1 21639,38213 1xrrA 293 5.42e+01 1xqwA 293 5.53e+01 1xqvA 293 5.67e+01 1mtzA 293 5.69e+01 c.69.1.7 79467 1xrlA 293 5.74e+01 2f8aA 208 5.74e+01 1xroA 293 5.78e+01 1mzpA 217 5.78e+01 e.24.1.1 79710 1ulyA 192 5.95e+01 1a9nB 96 6.03e+01 1urnA d.58.7.1 39165 2atmA 331 6.06e+01 1hdkA 141 6.25e+01 b.29.1.3 65807 1lcl 142 6.30e+01 1lcl b.29.1.3 24216 2c8sA 172 6.35e+01 1oyzA 280 6.40e+01 a.118.1.16 93775 1fp5A 222 6.44e+01 1f6aB b.1.1.2,b.1.1.2 21530,21531 2ddhA 661 6.48e+01 1aa7A 158 6.55e+01 1aa7A a.95.1.1 18741 1ea3A 164 6.68e+01 1aa7A a.95.1.1 59398 1v0bA 288 6.70e+01 d.144.1.7 100241 2cb2A 318 6.73e+01 1hrnA 337 6.91e+01 1smrA b.50.1.2 26869 2bksA 340 6.92e+01 1qklA 127 6.96e+01 1qklA a.143.1.2 39754 1dx8A 70 7.01e+01 1rb9 g.41.5.1 45243 1ob3A 288 7.03e+01 d.144.1.7 92747 1x3mA 415 7.04e+01 1v0oA 288 7.05e+01 d.144.1.7 100243 1ychA 398 7.32e+01 1hk8A 605 7.36e+01 c.7.1.3 83540 1w36D 608 7.43e+01 2bl9A 238 7.53e+01 1be7 54 7.54e+01 1rb9 g.41.5.1 45232 1sheA 103 7.56e+01 d.274.1.1 105551 1ohtA 215 7.67e+01 d.118.1.1 87036 1svtO 97 7.69e+01 1zy8A 474 7.71e+01 1zmdA 474 7.76e+01 1hk9A 74 7.93e+01 b.38.1.2 83541 2a1lA 270 8.04e+01 1xxqA 161 8.04e+01 1epuA 591 8.22e+01 1dn1A e.25.1.1 43358 1zduA 245 8.25e+01 1yacA 208 8.41e+01 1yacA c.33.1.3 31757 1yucA 255 8.43e+01 1ae6L 219 8.49e+01 8fabA b.1.1.1,b.1.1.2 20210,21222 1yokA 256 8.52e+01 1h7vA 60 8.62e+01 g.41.5.1 65713 1a6dB 543 8.63e+01 1a6dA a.129.1.2,c.8.5.2,d.56.1.2 19489,30820,38937 1izyA 283 8.64e+01 c.23.16.2 90729 1xr4A 509 8.69e+01 1kevA 351 8.78e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1onsA 282 8.82e+01 c.23.16.2 93371 1pv2A 283 8.83e+01 c.23.16.2 95142 1rdtE 23 8.84e+01 1z0bA 207 8.87e+01 1z0cA 207 8.90e+01