# List of top-scoring protein chains for T0326.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ghrA 302 1.31e-50 1wl8A 189 1.45e-21 1gpmA 525 1.49e-19 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1o1yA 239 2.68e-19 c.23.16.1 86554 2a9vA 212 9.68e-19 1t36B 382 2.03e-15 c.8.3.1,c.23.16.1 106307,106308 1m6vB 382 2.56e-15 c.8.3.1,c.23.16.1 74542,74543 1qdlB 195 2.59e-15 1qdlB c.23.16.1 31437 1cs0B 382 2.60e-15 1c3oB c.8.3.1,c.23.16.1 30740,31417 1jdbC 382 2.65e-15 c.8.3.1,c.23.16.1 30756,31433 1q7rA 219 4.10e-15 c.23.16.1 96054 1keeB 382 2.55e-14 c.8.3.1,c.23.16.1 68498,68499 1a9xB 379 5.54e-14 1c3oB c.8.3.1,c.23.16.1 30732,31409 1c30B 382 2.29e-13 c.8.3.1,c.23.16.1 30736,31413 1r9gA 216 4.02e-13 c.23.16.1 97258 1kxjA 205 1.42e-12 c.23.16.1 73153 1k9vF 201 1.96e-12 c.23.16.1 68365 1g2iA 166 2.86e-12 1g2iA c.23.16.2 31438 1i7qB 193 1.34e-11 1qdlB c.23.16.1 61902 1ox6A 555 1.59e-11 c.1.2.1,c.23.16.1 87505,87506 1i1qB 192 1.69e-11 1qdlB c.23.16.1 61544 1jvnA 555 8.63e-11 c.1.2.1,c.23.16.1 67355,67356 1s1mA 545 1.73e-10 c.23.16.1,c.37.1.10 105201,105202 2abwA 227 4.17e-10 1vcnA 550 5.34e-10 c.23.16.1,c.37.1.10 108506,108507 1vcoA 550 7.40e-10 c.23.16.1,c.37.1.10 108508,108509 1oi4A 193 1.21e-09 c.23.16.2 87047 1l9xA 315 1.92e-07 c.23.16.1 73762 1t3tA 1303 3.36e-07 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1ka9H 200 3.39e-07 c.23.16.1 77308 1pdvA 197 1.21e-05 c.23.16.2 88036 1p5fA 189 1.24e-05 c.23.16.2 94142 1j42A 189 1.43e-05 c.23.16.2 90837 1pe0A 197 1.48e-05 c.23.16.2 88045 2fexA 188 1.68e-05 1u9cA 224 9.77e-05 1izyA 283 8.53e-03 c.23.16.2 90729 1onsA 282 8.99e-03 c.23.16.2 93371 1pv2A 283 8.99e-03 c.23.16.2 95142 1n57A 291 9.17e-03 c.23.16.2 85328 2ab0A 205 1.48e-02 1qvzA 237 2.81e-02 c.23.16.2 96453 1rw7A 243 3.30e-02 c.23.16.2 97963 1qvvA 237 3.38e-02 c.23.16.2 96442 1vhqA 232 5.67e-02 c.23.16.2 100696 1oy1A 228 5.82e-02 c.23.16.2 87548 2ajrA 331 1.07e-01 1llc 325 3.59e-01 1hyhA c.2.1.5,d.162.1.1 30176,42143 1ka9F 252 4.30e-01 c.1.2.1 77307 1u0tA 307 5.59e-01 e.52.1.1 107567 1y3hA 307 5.64e-01 1dq3A 454 7.24e-01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1kevA 351 8.34e-01 1pedA b.35.1.2,c.2.1.1 24749,29765 1vbuA 328 8.39e-01 2acvA 463 1.97e+00 2acwA 465 2.02e+00 1ydmA 187 2.08e+00 1jqbA 351 2.24e+00 b.35.1.2,c.2.1.1 77151,77152 1apyA 162 2.44e+00 1apyA d.153.1.5 42004 1zq1A 438 2.52e+00 1ku1A 230 2.83e+00 a.118.3.1 72996 1zcfA 327 3.51e+00 1nzdA 351 3.71e+00 c.87.1.1 92373 1jixA 351 3.79e+00 1c3jA c.87.1.1 63081 1dwoA 262 3.93e+00 1qj4A c.69.1.20 34804 2gk3A 256 4.03e+00 1eb8A 262 4.04e+00 c.69.1.20 64896 1augA 215 4.64e+00 1a2zA c.56.4.1 33798 1xx9A 238 4.91e+00 1psdA 409 5.03e+00 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1ybaA 410 5.05e+00 1e89A 262 5.31e+00 1qj4A c.69.1.20 59375 1sc6A 404 5.41e+00 1oecA 316 5.42e+00 2d0iA 333 5.59e+00 1rqgA 722 5.84e+00 a.27.1.1,c.26.1.1,g.41.1.1 105063,105064,105065 1a5t 334 6.84e+00 1a5t a.80.1.1,c.37.1.20 18450,32423 1izzA 283 6.87e+00 c.23.16.2 90731 1zdzA 302 7.68e+00 1eiwA 111 7.69e+00 1eiwA c.23.3.1 31130 1r2kA 169 7.71e+00 c.57.1.1 104781 1gof 639 7.73e+00 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1k3iA 656 7.79e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2f83A 625 7.80e+00 1dj3A 442 7.97e+00 1adeA c.37.1.10 32239 1mkzA 172 8.12e+00 c.57.1.1 84998 1yqzA 438 8.56e+00 1t2xA 639 8.76e+00 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 1c4xA 285 8.86e+00 1c4xA c.69.1.10 34684 2fzlA 219 9.73e+00 1x7oA 287 1.02e+01 1z0sA 278 1.03e+01 1mo9A 523 1.03e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1wcgA 464 1.05e+01 2gjlA 328 1.09e+01 2fvvA 194 1.12e+01 1jmxA 494 1.16e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1ehs 48 1.19e+01 1ehs g.2.1.1 43998 1yh3A 256 1.26e+01 1vluA 468 1.42e+01 c.82.1.1 108864 1mldA 314 1.45e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1ll7A 392 1.48e+01 c.1.8.5,d.26.3.1 78085,78086 1i5eA 209 1.48e+01 c.61.1.1 71116 1ll6A 392 1.49e+01 c.1.8.5,d.26.3.1 78077,78078 1d2kA 392 1.49e+01 1d2kA c.1.8.5,d.26.3.1 29008,38442 1lpbB 449 1.53e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 1suwA 249 1.54e+01 e.52.1.1 106027 1ykfA 352 1.55e+01 1pedA b.35.1.2,c.2.1.1 24757,29773 1uptA 171 1.61e+01 c.37.1.8 99767 1iweA 457 1.74e+01 c.37.1.10 71486 1zx5A 300 1.81e+01 1vrdA 494 1.84e+01 1zosA 230 1.89e+01 1pq2A 476 2.00e+01 a.104.1.1 94987 4nul 138 2.01e+01 5nul c.23.5.1 31201 2dfdA 342 2.03e+01 1jg1A 235 2.13e+01 c.66.1.7 66661 1pkuA 150 2.17e+01 2atmA 331 2.21e+01 2cfyA 521 2.24e+01 1zhpA 238 2.37e+01 1iw8A 231 2.39e+01 a.111.1.1 76866 2adcA 229 2.39e+01 4nll 138 2.40e+01 5nul c.23.5.1 31203 1h72C 296 2.40e+01 d.14.1.5,d.58.26.1 60712,60713 1xxfA 238 2.42e+01 1z5oA 242 2.42e+01 1e7uA 961 2.44e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2aj2A 208 2.45e+01 2fwrA 472 2.47e+01 1jysA 242 2.51e+01 c.56.2.1 77216 1z5nA 242 2.53e+01 1gpl 432 2.54e+01 1gpl b.12.1.2,c.69.1.19 23645,34793 1gpwA 253 2.55e+01 c.1.2.1 65460 1yleA 342 2.57e+01 1jflA 228 2.61e+01 c.78.2.1,c.78.2.1 71656,71657 1fvx 138 2.76e+01 5nul c.23.5.1 31204 2cf2C 342 2.78e+01 1im5A 180 2.80e+01 c.33.1.3 66211 1vyhC 410 2.85e+01 1zslA 238 2.87e+01 1d2fA 390 2.96e+01 1d2fA c.67.1.3 34411 1juvA 193 3.00e+01 c.71.1.1 90912 1vh7A 265 3.09e+01 c.1.2.1 100646 1u02A 239 3.14e+01 c.108.1.15 107538 2cw6A 298 3.16e+01 1m6oA 276 3.18e+01 b.1.1.2,d.19.1.1 91189,91190 1sy7A 715 3.18e+01 1aozA 552 3.22e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126 3nll 138 3.33e+01 5nul c.23.5.1 31206 1thfD 253 3.33e+01 1thfD c.1.2.1 28535 2fdx 138 3.35e+01 5nul c.23.5.1 31192 1wu2A 396 3.40e+01 2a0nA 265 3.41e+01 1dj2A 443 3.49e+01 1adeA c.37.1.10 32237 5nll 138 3.50e+01 5nul c.23.5.1 31198 5nul 138 3.52e+01 5nul c.23.5.1 31191 1qftB 171 3.56e+01 1qftA b.60.1.1 27152 2bvyA 475 3.58e+01 1re0B 221 3.61e+01 a.118.3.1 97318 1m0uA 249 3.63e+01 a.45.1.1,c.47.1.5 78359,78360 1zhmA 238 3.68e+01 1v59A 478 3.72e+01 1r5tA 142 3.79e+01 c.97.1.1 104812 1qftA 175 3.89e+01 1qftA b.60.1.1 27151 1r5mA 425 3.93e+01 1ep1B 261 3.97e+01 1ep2B b.43.4.2,c.25.1.3 25665,31555 1ep3B 262 3.98e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1yuzA 202 4.02e+01 2do8A 188 4.05e+01 1wwmA 190 4.07e+01 1qm9A 198 4.09e+01 1qm9A d.58.7.1,d.58.7.1 39207,39208 1yv1A 202 4.11e+01 1llnA 262 4.18e+01 d.165.1.1 84625 1ldnA 316 4.22e+01 1hyhA c.2.1.5,d.162.1.1 30166,42133 1ldbA 317 4.23e+01 1o51A 114 4.27e+01 d.58.5.4 92480 1vpe 398 4.27e+01 16pk c.86.1.1 35453 1y9aA 360 4.41e+01 1pjaA 302 4.41e+01 c.69.1.13 94758 1xi8A 403 4.51e+01 1q9eA 104 4.61e+01 d.1.1.4 96269 1f06A 320 4.75e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1syvA 276 4.80e+01 1ixrA 191 4.85e+01 a.60.2.1,b.40.4.2 76925,76926 1ep0A 185 4.94e+01 1dzrA b.82.1.1 28080 1jxvA 152 4.97e+01 d.58.6.1 71932 1qxoA 388 5.04e+01 d.258.1.1 96539 1l5aA 436 5.11e+01 c.43.1.2,c.43.1.2 75923,75924 1he8A 965 5.22e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19154,23189,37637,41717 1e8yA 966 5.31e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1b66A 140 5.50e+01 1b66A d.96.1.2 40657 1hjqA 332 5.71e+01 c.1.8.3 83491 1u0lA 301 5.72e+01 b.40.4.5,c.37.1.8 107551,107552 1d2tA 231 5.72e+01 1d2tA a.111.1.1 19052 1oaoC 729 5.76e+01 e.26.1.3 86746 1iofA 208 5.82e+01 1a2zA c.56.4.1 62625 1ucnA 152 6.02e+01 d.58.6.1 99183 1mjgM 729 6.10e+01 e.26.1.3 79204 1ttoA 104 6.17e+01 1ch0A 104 6.19e+01 9rnt d.1.1.4 36129 1k3eA 156 6.25e+01 d.198.1.1 68103 1twfA 1733 6.32e+01 1uhuA 105 6.43e+01 a.61.1.6 107854 1n4aA 252 6.51e+01 c.92.2.2 85317 1wm1A 317 6.55e+01 c.69.1.7 109405 1n2zA 245 6.62e+01 c.92.2.2 79865 1pg6A 243 6.66e+01 b.82.5.2 94673 1r4aA 165 6.73e+01 c.37.1.8 96986 1jwhC 215 6.78e+01 g.41.4.1 71915 1v2bA 177 6.80e+01 d.107.1.2 108279 1bu8A 452 6.86e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1zjdA 237 7.03e+01 1ccg 291 7.03e+01 1ryc a.93.1.1 18627 1ds4A 292 7.03e+01 1ryc a.93.1.1 59129 1pzsA 208 7.09e+01 b.1.8.1 104397 1x94A 191 7.11e+01 c.80.1.3 109522 2ax3A 502 7.16e+01 1bllE 488 7.21e+01 1lam c.50.1.1,c.56.5.3 33170,33833 1qgjA 300 7.23e+01 1bgp a.93.1.1 18691 1mkaA 171 7.30e+01 1mkaA d.38.1.2 38543 2bujA 317 7.30e+01 1xa0A 328 7.31e+01 1r4yA 136 7.32e+01 d.1.1.3 97056 1c41A 200 7.44e+01 1di0A c.16.1.1 30962 1c2yA 156 7.50e+01 1rvv1 c.16.1.1 30972 1w0fA 485 7.50e+01 a.104.1.1 108987 1tqnA 486 7.52e+01 a.104.1.1 107238 1v0jA 399 7.60e+01 7mdhA 375 7.61e+01 1bmdA c.2.1.5,d.162.1.1 30130,42097 1lam 484 7.69e+01 1lam c.50.1.1,c.56.5.3 33166,33829 2ewbA 486 7.70e+01 1cruA 454 7.81e+01 1c9uA b.68.2.1 27617 1tis 286 7.82e+01 1bkpA d.117.1.1 41040 1q0rA 298 7.86e+01 c.69.1.28 95508 1nawA 419 7.93e+01 1uae d.68.2.2 39582 1oalA 151 8.04e+01 b.1.8.1 86739 1ejdA 419 8.10e+01 1uae d.68.2.2 39576 1de3A 150 8.25e+01 1aqzA d.1.1.3 36240 1d4oA 184 8.50e+01 1d4oA c.31.1.4 31748 1jscA 630 8.55e+01 c.31.1.3,c.36.1.5,c.36.1.9 67224,67225,67226 1v6sA 390 8.58e+01 c.86.1.1 100424 2gokA 429 8.59e+01 1rrmA 386 8.65e+01 e.22.1.2 105081 2b20A 403 8.72e+01 2bl4A 392 8.75e+01 1dot 686 8.76e+01 1nnt c.94.1.2,c.94.1.2 35876,35877 2bdqA 224 8.78e+01 1dwqA 262 8.83e+01 1qj4A c.69.1.20 34808 1t9bA 677 8.89e+01 1ybhA 590 8.91e+01