Best Alignments for T0325

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1v6tA/T0325-1v6tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v6tA/T0325-1v6tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8183e-046.75e-38
2c71A/T0325-2c71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c71A/T0325-2c71A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2626e-028.37e-37
1ny1A/T0325-1ny1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ny1A/T0325-1ny1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6726e-021.40e-32 c.6.2.3
1mi3A/T0325-1mi3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mi3A/T0325-1mi3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6979e-021.55e-19 c.1.7.1
1w5qA/T0325-1w5qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w5qA/T0325-1w5qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8938e-022.10e-18
1xw8A/T0325-1xw8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xw8A/T0325-1xw8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8689e-026.78e-26
1xm8A/T0325-1xm8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xm8A/T0325-1xm8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0016e-018.00e-15
1ls1A/T0325-1ls1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ls1A/T0325-1ls1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1687e-014.23e-15 a.24.13.1
c.37.1.10
2c1iA/T0325-2c1iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c1iA/T0325-2c1iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1813e-018.04e-25
2cc0A/T0325-2cc0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cc0A/T0325-2cc0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9027e-017.74e-38

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001