# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6tA 255 1.23e-03 1jmvA 141 2.99e-02 c.26.2.4 66897 2ah5A 210 2.99e-02 1wr2A 238 4.16e-02 1xm8A 254 6.94e-02 1ny1A 240 8.65e-02 c.6.2.3 86395 2blnA 305 8.68e-02 1xw8A 252 8.96e-02 1mi3A 322 9.69e-02 c.1.7.1 91274 1ffyA 917 1.10e-01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 2bbrA 195 1.44e-01 1vi9A 299 1.83e-01 c.72.1.5 100750 1sc6A 404 2.19e-01 1wd5A 208 2.50e-01 2b0jA 358 2.76e-01 2c71A 216 3.13e-01 1sh0A 510 3.70e-01 e.8.1.4 98876 1ls1A 295 4.24e-01 a.24.13.1,c.37.1.10 78170,78171 2f5xA 312 4.95e-01 1x1zA 252 5.32e-01 1km4A 247 5.43e-01 c.1.2.3 72740 1d2fA 390 6.05e-01 1d2fA c.67.1.3 34411 1e6yA 569 6.07e-01 1mroA a.89.1.1,d.58.31.2 18529,39447 1j7xA 302 6.25e-01 c.14.1.2 66425 1w0hA 204 6.31e-01 1wzuA 300 6.70e-01 1cqmA 101 7.54e-01 1ris d.58.14.1 39321 1vk3A 615 8.15e-01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1vl4A 447 9.13e-01 d.283.1.1 108718 1umdA 367 9.53e-01 c.36.1.11 99599 1w5qA 337 1.00e-00 1a4iA 301 1.01e+00 1a4iA c.2.1.7,c.58.1.2 30278,33926 1yf3A 259 1.03e+00 1qwkA 317 1.03e+00 c.1.7.1 96482 1knqA 175 1.07e+00 c.37.1.17 72786 1ob8A 135 1.10e+00 1wa3A 205 1.17e+00 1gca 309 1.23e+00 1gca c.93.1.1 35659 2g7lA 243 1.27e+00 2amxA 376 1.30e+00 1wyuA 438 1.47e+00 1vixA 420 1.49e+00 c.56.5.4,d.58.19.1 100777,100778 1sdoA 203 1.51e+00 c.52.1.21 98809 1oltA 457 1.67e+00 c.1.28.2 93334 1rlmA 271 1.69e+00 1in6A 334 1.91e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1x7oA 287 1.94e+00 1m3qA 317 1.96e+00 a.96.1.3,d.129.1.2 91184,91185 1l9vA 317 2.04e+00 d.13.2.1,d.216.1.1 73760,73761 2b99A 156 2.07e+00 1f8rA 498 2.29e+00 1f8rA c.3.1.2,d.16.1.5 30410,37974 1zzmA 259 2.39e+00 1o60A 292 2.44e+00 c.1.10.4 92532 1bw0A 416 2.54e+00 1bw0A c.67.1.1 34385 1dpgA 485 2.55e+00 1dpgA c.2.1.3,d.81.1.5 30074,39989 2bmaA 470 2.58e+00 1vjzA 341 2.61e+00 c.1.8.3 100838 1hx0A 496 2.73e+00 b.71.1.1,c.1.8.1 61346,61347 4tmkA 213 2.75e+00 5tmpA c.37.1.1 31930 1pq1A 196 2.79e+00 f.1.4.1 94986 1ituA 369 2.91e+00 c.1.9.7 71423 2fliA 220 2.94e+00 1hbnA 549 2.96e+00 1mroA a.89.1.1,d.58.31.2 60898,60899 1h4pA 408 3.03e+00 c.1.8.3 90617 1qksA 567 3.11e+00 1qksA a.3.1.2,b.70.2.1 15951,27710 2f3yA 148 3.33e+00 2d13A 227 3.43e+00 1s1pA 331 3.53e+00 c.1.7.1 98350 1j8mF 297 3.62e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1qzzA 374 3.69e+00 a.4.5.29,c.66.1.12 96719,96720 1udzA 182 3.81e+00 b.51.1.1 99239 1yzfA 195 3.97e+00 1wraA 308 4.16e+00 1a70 97 4.41e+00 1awd d.15.4.1 37678 1dl5A 317 4.57e+00 1dl5A c.66.1.7,d.197.1.1 64720,64721 1hh1A 143 4.58e+00 1gefA c.52.1.18 61036 1wnyA 186 4.63e+00 1zbsA 291 4.64e+00 2cw8A 537 4.88e+00 2pii 112 5.10e+00 2pii d.58.5.1 39071 2anuA 255 5.10e+00 2fp4B 395 5.11e+00 1h2bA 359 5.11e+00 b.35.1.2,c.2.1.1 90543,90544 7aatA 401 5.15e+00 1ajsA c.67.1.1 34250 2cvbA 188 5.32e+00 1k4iA 233 5.37e+00 d.115.1.2 72056 1sflA 238 5.39e+00 1wbeA 209 5.42e+00 1eluA 390 5.50e+00 1elqA c.67.1.3 34434 1vkyA 347 5.51e+00 e.53.1.1 108696 1v37A 177 5.69e+00 1smd 496 5.78e+00 1smd b.71.1.1,c.1.8.1 27768,28755 1ngr 85 5.78e+00 1ngr a.77.1.2 18422 1vc4A 254 5.87e+00 c.1.2.4 100557 1yx1A 264 5.89e+00 1rz4A 226 5.93e+00 a.4.5.53,a.118.1.18 105131,105132 1qb7A 236 6.09e+00 1qb7A c.61.1.1 34087 1v7rA 186 6.13e+00 c.51.4.1 100482 1vljA 407 6.17e+00 e.22.1.2 108832 1meoA 209 6.20e+00 c.65.1.1 79035 1k7jA 206 6.23e+00 d.115.1.1 72103 1u8sA 192 6.23e+00 d.58.18.5,d.58.18.5 107737,107738 1div 149 6.38e+00 1div d.99.1.1,d.100.1.1 40692,40693 1px5A 349 6.45e+00 a.160.1.2,d.218.1.6 95277,95278 1j2rA 199 6.49e+00 c.33.1.3 90788 1vecA 206 6.49e+00 c.37.1.19 100575 1us0A 316 6.59e+00 c.1.7.1 99850 1rxdA 159 6.66e+00 2c1iA 431 6.75e+00 1b7yA 350 6.79e+00 1pysA d.104.1.1 40776 1q7zA 566 6.88e+00 c.1.21.2,c.1.26.1 96090,96091 2f46A 156 6.91e+00 1fc6A 388 6.97e+00 1fc6A b.36.1.3,c.14.1.2 64738,64739 1jg1A 235 7.10e+00 c.66.1.7 66661 2f5gA 133 7.35e+00 1n2zA 245 7.38e+00 c.92.2.2 79865 1exrA 148 7.38e+00 1cll a.39.1.5 17299 1j4aA 333 7.48e+00 c.2.1.4,c.23.12.1 71502,71503 1cb0A 283 7.50e+00 1cb0A c.56.2.1 33790 1cjxA 357 7.56e+00 1cjxA d.32.1.3,d.32.1.3 38516,38517 1vp8A 201 7.59e+00 1xdwA 331 7.72e+00 1fmjA 351 7.72e+00 c.37.1.5 59879 1j96A 323 8.12e+00 c.1.7.1 71616 1j6oA 268 8.17e+00 c.1.9.12 77088 1whzA 70 8.30e+00 1twyA 290 8.37e+00 1in4A 334 8.53e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1ycdA 243 8.87e+00 1svdM 110 8.94e+00 1vj1A 363 9.02e+00 b.35.1.2,c.2.1.1 100794,100795 1oi7A 288 9.28e+00 c.2.1.8,c.23.4.1 87049,87050 1yb3A 175 9.30e+00 1rloA 271 9.30e+00 1mdoA 393 9.35e+00 c.67.1.4 79013 1e4iA 447 9.40e+00 1e70M c.1.8.4 59225 1j1iA 296 9.48e+00 c.69.1.10 83977 1z6oM 191 9.50e+00 2f9lA 199 9.57e+00 1umkA 275 9.57e+00 1s2oA 244 9.81e+00 2f9sA 151 9.82e+00 1xioA 261 9.83e+00 1z41A 338 9.88e+00 1y97A 238 9.91e+00 2aqjA 538 1.00e+01 1j31A 262 1.00e+01 d.160.1.2 90808 1ltzA 297 1.01e+01 d.178.1.1 74254 2aioA 269 1.01e+01 1vr6A 350 1.01e+01 1ul7A 102 1.02e+01 d.129.6.1 99540 1uehA 253 1.04e+01 c.101.1.1 99259 1i2aA 219 1.06e+01 e.24.1.1 90660 3nul 130 1.08e+01 3nul d.110.1.1 40891 1h6gA 256 1.08e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1gsoA 431 1.13e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1tv8A 340 1.13e+01 c.1.28.3 107352 1iyeA 309 1.15e+01 e.17.1.1 83786 1zgdA 312 1.16e+01 1e7lA 157 1.16e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1i1qB 192 1.17e+01 1qdlB c.23.16.1 61544 1iukA 140 1.17e+01 c.2.1.8 83712 2d2mC 147 1.19e+01 2gk3A 256 1.19e+01 1vl5A 260 1.21e+01 c.66.1.41 108720 1ej2A 181 1.22e+01 1f9aA c.26.1.3 59414 1q35A 320 1.24e+01 c.94.1.1 95661 1fpzA 212 1.24e+01 1fpzA c.45.1.1 59976 1frrA 95 1.24e+01 1awd d.15.4.1 37674 1ecfA 504 1.25e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2citA 282 1.27e+01 1t6nA 220 1.27e+01 c.37.1.19 106576 1imjA 210 1.28e+01 c.69.1.23 71246 2an1A 292 1.28e+01 1x9iA 302 1.31e+01 1vqoS 85 1.33e+01 2go7A 207 1.34e+01 1vhtA 218 1.35e+01 c.37.1.1 100700 1wwkA 307 1.36e+01 1st9A 143 1.36e+01 c.47.1.10 98987 1khyA 148 1.38e+01 a.174.1.1 77410 1p1xA 260 1.39e+01 c.1.10.1 104060 1h1yA 228 1.39e+01 c.1.2.2 76506 1uarA 285 1.39e+01 c.46.1.2,c.46.1.2 107762,107763 1qh5A 260 1.40e+01 1qh5A d.157.1.2 42057 2cc0A 195 1.41e+01 1yyaA 250 1.42e+01 1guqA 348 1.43e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1x0rA 249 1.47e+01 1pbuA 162 1.47e+01 d.58.46.1 88030 1rd5A 262 1.48e+01 1oheA 348 1.48e+01 c.45.1.1,c.45.1.1 87013,87014 1lt8A 406 1.48e+01 c.1.26.1 78186 2acvA 463 1.48e+01 1gk8I 140 1.49e+01 d.73.1.1 65242 1sffA 426 1.50e+01 c.67.1.4 105482 1jkmB 361 1.51e+01 1jkmA c.69.1.2 34634 1t0bA 252 1.52e+01 c.23.16.6 106199 1jjvA 206 1.52e+01 c.37.1.1 71698 1cfr 285 1.53e+01 1cfr c.52.1.7 33312 1e5rA 290 1.54e+01 1e5rA b.82.2.4 59276 1t7lA 766 1.54e+01 2gokA 429 1.55e+01 1m8jA 181 1.56e+01 c.26.1.3 84875 1knwA 425 1.56e+01 b.49.2.3,c.1.6.1 90969,90970 1ui0A 205 1.57e+01 c.18.1.2 99411 1nsj 205 1.57e+01 1nsj c.1.2.4 28560 1bgp 309 1.58e+01 1bgp a.93.1.1 18690 1z00B 84 1.58e+01 1ir21 140 1.59e+01 1v84A 253 1.59e+01 c.68.1.7 108419 1eceA 358 1.60e+01 1eceA c.1.8.3 28813 2czdA 208 1.60e+01 1zmaA 118 1.61e+01 1sgwA 214 1.62e+01 c.37.1.12 105541 1efvA 315 1.64e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 1srvA 145 1.66e+01 1derA c.8.5.1 30817 1cxqA 162 1.66e+01 1cxqA c.55.3.2 33621 1vlmA 219 1.66e+01 c.66.1.41 108836 1ig8A 486 1.67e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1qstA 160 1.67e+01 1yghA d.108.1.1 40804 1pvvA 315 1.68e+01 c.78.1.1,c.78.1.1 95190,95191 1frb 315 1.68e+01 1frb c.1.7.1 28665 2aotA 292 1.69e+01 1ep3A 311 1.69e+01 2dorA c.1.4.1 28597 1e2wA 251 1.70e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 3kvt 115 1.70e+01 1t1dA d.42.1.2 38642 1vhcA 224 1.71e+01 c.1.10.1 100661 1snyA 267 1.72e+01 c.2.1.2 105833 1ckeA 227 1.74e+01 1ckeA c.37.1.1 31846 2fb1A 226 1.76e+01 2f6kA 307 1.78e+01 1o0yA 260 1.80e+01 c.1.10.1 80756 1g57A 217 1.80e+01 1g57A d.115.1.2 60253 1a53 247 1.81e+01 1a53 c.1.2.4 28564 1fobA 334 1.82e+01 c.1.8.3 83255 1swxA 209 1.83e+01 a.224.1.1 106075 2aamA 309 1.83e+01 2fcjA 119 1.85e+01 1h70A 255 1.86e+01 1h70A d.126.1.3 60711 1rm6A 769 1.87e+01 1u7pA 164 1.89e+01 2jdxA 385 1.90e+01 1jdw d.126.1.2 41139 1m65A 245 1.90e+01 c.6.3.1 84847 1e5dA 402 1.91e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1xwyA 264 1.92e+01 1byrA 155 1.92e+01 1byrA d.136.1.1 41450 2blkA 122 1.94e+01 1jkxA 212 1.94e+01 c.65.1.1 66813 2etjA 250 1.94e+01 1k94A 165 1.95e+01 a.39.1.8 68333 2c2xA 281 1.97e+01 1epuA 591 1.97e+01 1dn1A e.25.1.1 43358 2akaB 299 1.99e+01 1iuqA 367 2.00e+01 c.112.1.1 90703 2bwnA 401 2.04e+01 1r71A 178 2.06e+01 a.4.14.1 104823 1vdwA 254 2.07e+01 e.7.1.1 100569 1i88A 389 2.07e+01 c.95.1.2,c.95.1.2 66070,66071 2fyxA 143 2.09e+01 1w36B 1180 2.14e+01 1wouA 123 2.16e+01 c.47.1.16 109471 1p0fA 373 2.22e+01 b.35.1.2,c.2.1.1 87642,87643 1wznA 252 2.23e+01 1v4vA 376 2.23e+01 c.87.1.3 100313 1x0lA 333 2.24e+01 1ixcA 294 2.24e+01 a.4.5.37,c.94.1.1 83764,83765 1eyhA 144 2.25e+01 1eduA a.118.9.1 19214 1tu5A 746 2.26e+01 1nnhA 294 2.28e+01 d.104.1.1 92005 1dbxA 158 2.30e+01 1dbuA d.116.1.1 40928 1ukcA 522 2.32e+01 c.69.1.17 107911 1xteA 154 2.33e+01 1puoA 170 2.38e+01 a.101.1.1,a.101.1.1 95134,95135 1zhaA 267 2.38e+01 1aocA 175 2.40e+01 1aocA g.17.1.5 44817 1jbwA 428 2.40e+01 c.59.1.2,c.72.2.2 62860,62861 1a8q 274 2.40e+01 1brt c.69.1.12 34702 1w77A 228 2.41e+01 1jftA 340 2.41e+01 a.35.1.5,c.93.1.1 66652,66653 1ysjA 404 2.44e+01 1o08A 221 2.44e+01 c.108.1.6 86525 1rk6A 496 2.48e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1qysA 106 2.49e+01 k.41.1.1 96603 1tqjA 230 2.50e+01 c.1.2.2 107228 1o4vA 183 2.53e+01 c.23.8.1 86628 1twdA 256 2.56e+01 c.1.30.1 107397 1dzfA 215 2.59e+01 1dzfA c.52.3.1,d.78.1.1 33344,39753 1v7zA 260 2.60e+01 c.125.1.1 100488 1io2A 213 2.60e+01 1ekeA c.55.3.1 62612 1yqhA 109 2.61e+01 1eg2A 319 2.62e+01 1eg2A c.66.1.11 34249 1ux8A 132 2.63e+01 1z5yE 149 2.63e+01 2frnA 278 2.66e+01 1snnA 227 2.68e+01 d.115.1.2 105821 1u9yA 284 2.69e+01 2bjkA 516 2.69e+01 1knvA 293 2.73e+01 c.52.1.7 68707 1sgjA 284 2.73e+01 c.1.12.5 105535 1jtvA 327 2.73e+01 c.2.1.2 84230 2dpmA 284 2.73e+01 2dpmA c.66.1.28 34246 1ttzA 87 2.74e+01 c.47.1.1 107309 1y0zA 330 2.75e+01 8abp 306 2.75e+01 8abp c.93.1.1 35647 1mk4A 157 2.76e+01 d.108.1.1 84979 1gen 218 2.80e+01 1gen b.66.1.1 27536 1g2oA 268 2.81e+01 1b8oA c.56.2.1 60228 1xvaA 292 2.84e+01 1xvaA c.66.1.5 34183 1xzpB 150 2.85e+01 1l9xA 315 2.88e+01 c.23.16.1 73762 2az4A 429 2.88e+01 1zk4A 251 2.89e+01 1oaa 259 2.90e+01 1oaa c.2.1.2 29829 1bf6A 291 2.91e+01 1pscA c.1.9.3 29065 1o98A 511 2.91e+01 c.105.1.1,c.76.1.3 86684,86685 1ngkA 128 2.92e+01 a.1.1.1 85673 1paqA 189 2.94e+01 a.118.1.14 94413 1mkmA 249 2.95e+01 a.4.5.33,d.110.2.2 79242,79243 1j24A 143 2.98e+01 c.52.1.20 84008 2afbA 351 3.00e+01 1nffA 260 3.01e+01 c.2.1.2 80457 1gnkA 112 3.03e+01 2pii d.58.5.1 39073 1yfsA 465 3.05e+01 1up7A 417 3.06e+01 2gjlA 328 3.07e+01 1fyeA 229 3.11e+01 1fyeA c.23.16.4 31477 1j1nA 492 3.11e+01 c.94.1.1 83978 1wy0A 342 3.14e+01 1aisB 200 3.14e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1uwvA 433 3.15e+01 b.40.4.12,c.66.1.40 100128,100129 1uv7A 110 3.15e+01 d.67.4.1 100040 1ly1A 181 3.16e+01 c.37.1.1 74334 1uuhA 159 3.16e+01 d.169.1.4 100008 1tbxA 99 3.18e+01 a.4.5.48 106748 1kdoA 227 3.20e+01 c.37.1.1 68478 1gteA 1025 3.21e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1p1mA 406 3.22e+01 b.92.1.4,c.1.9.9 87696,87697 1gpmA 525 3.22e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1ukfA 188 3.23e+01 d.3.1.10 99488 1z72A 225 3.24e+01 1srqA 341 3.24e+01 e.55.1.1 105967 2fi0A 81 3.24e+01 1ye8A 178 3.31e+01 1o6dA 163 3.33e+01 c.116.1.3 92567 1tiqA 180 3.35e+01 d.108.1.1 107010 1nnlA 225 3.37e+01 c.108.1.4 85906 1v72A 356 3.43e+01 2c3nA 247 3.44e+01 1chuA 540 3.44e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1qusA 322 3.45e+01 1ltm d.2.1.6 36991 1ov2A 99 3.49e+01 a.13.1.1 93580 2fbwB 252 3.51e+01 1twuA 139 3.52e+01 d.32.1.8 107413 1u9iA 519 3.52e+01 2faoA 309 3.57e+01 1pe1A 267 3.58e+01 c.1.10.4 94591 1uzbA 516 3.59e+01 c.82.1.1 100220 1q0uA 219 3.59e+01 c.37.1.19 95512 2b0tA 738 3.60e+01 1s0aA 429 3.60e+01 c.67.1.4 98263 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