/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0323.t06.str2 rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0323/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h56A/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175280455 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.02008 sec, elapsed time= 6.06848 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.10107 sec, elapsed time= 6.15787 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0323 numbered 1 through 221 Created new target T0323 from T0323.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2h56A expands to /projects/compbio/data/pdb/2h56.pdb.gz 2h56A:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Read 218 residues and 1650 atoms. # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.63869 sec, elapsed time= 8.72927 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 173 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -33.7558 # GDT_score(maxd=8,maxw=2.9)= -31.0876 # GDT_score(maxd=8,maxw=3.2)= -29.3162 # GDT_score(maxd=8,maxw=3.5)= -27.6274 # GDT_score(maxd=10,maxw=3.8)= -31.7412 # GDT_score(maxd=10,maxw=4)= -30.5641 # GDT_score(maxd=10,maxw=4.2)= -29.4163 # GDT_score(maxd=12,maxw=4.3)= -33.5717 # GDT_score(maxd=12,maxw=4.5)= -32.3555 # GDT_score(maxd=12,maxw=4.7)= -31.2336 # GDT_score(maxd=14,maxw=5.2)= -32.2726 # GDT_score(maxd=14,maxw=5.5)= -30.8007 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2.5130000e+03 rmsd (weighted)= 1.0929913e+01 (unweighted)= 1.9607141e+01 superimposing iter= 1 total_weight= 5.6304921e+03 rmsd (weighted)= 5.4323539e+00 (unweighted)= 1.9910634e+01 superimposing iter= 2 total_weight= 2.5009972e+03 rmsd (weighted)= 4.3512859e+00 (unweighted)= 1.9966758e+01 superimposing iter= 3 total_weight= 1.7989342e+03 rmsd (weighted)= 4.1436710e+00 (unweighted)= 1.9983151e+01 superimposing iter= 4 total_weight= 1.6735256e+03 rmsd (weighted)= 4.0957620e+00 (unweighted)= 1.9990002e+01 superimposing iter= 5 total_weight= 1.6611959e+03 rmsd (weighted)= 4.0648418e+00 (unweighted)= 1.9993599e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1114369974.pdb -s /var/tmp/to_scwrl_1114369974.seq -o /var/tmp/from_scwrl_1114369974.pdb > /var/tmp/scwrl_1114369974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114369974.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -34.5622 # GDT_score(maxd=8,maxw=2.9)= -32.1646 # GDT_score(maxd=8,maxw=3.2)= -30.0778 # GDT_score(maxd=8,maxw=3.5)= -28.2077 # GDT_score(maxd=10,maxw=3.8)= -32.3263 # GDT_score(maxd=10,maxw=4)= -31.0465 # GDT_score(maxd=10,maxw=4.2)= -29.8754 # GDT_score(maxd=12,maxw=4.3)= -34.037 # GDT_score(maxd=12,maxw=4.5)= -32.811 # GDT_score(maxd=12,maxw=4.7)= -31.6719 # GDT_score(maxd=14,maxw=5.2)= -32.6915 # GDT_score(maxd=14,maxw=5.5)= -31.2192 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_796727703.pdb -s /var/tmp/to_scwrl_796727703.seq -o /var/tmp/from_scwrl_796727703.pdb > /var/tmp/scwrl_796727703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796727703.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -36.6359 # GDT_score(maxd=8,maxw=2.9)= -35.059 # GDT_score(maxd=8,maxw=3.2)= -32.8176 # GDT_score(maxd=8,maxw=3.5)= -30.798 # GDT_score(maxd=10,maxw=3.8)= -35.1266 # GDT_score(maxd=10,maxw=4)= -33.7648 # GDT_score(maxd=10,maxw=4.2)= -32.4776 # GDT_score(maxd=12,maxw=4.3)= -36.723 # GDT_score(maxd=12,maxw=4.5)= -35.3826 # GDT_score(maxd=12,maxw=4.7)= -34.1515 # GDT_score(maxd=14,maxw=5.2)= -35.005 # GDT_score(maxd=14,maxw=5.5)= -33.3896 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_753573069.pdb -s /var/tmp/to_scwrl_753573069.seq -o /var/tmp/from_scwrl_753573069.pdb > /var/tmp/scwrl_753573069.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_753573069.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.880184 # GDT_score = -44.8157 # GDT_score(maxd=8,maxw=2.9)= -45.5749 # GDT_score(maxd=8,maxw=3.2)= -42.5303 # GDT_score(maxd=8,maxw=3.5)= -39.7757 # GDT_score(maxd=10,maxw=3.8)= -43.3731 # GDT_score(maxd=10,maxw=4)= -41.666 # GDT_score(maxd=10,maxw=4.2)= -40.0909 # GDT_score(maxd=12,maxw=4.3)= -44.0015 # GDT_score(maxd=12,maxw=4.5)= -42.4139 # GDT_score(maxd=12,maxw=4.7)= -40.9082 # GDT_score(maxd=14,maxw=5.2)= -41.0585 # GDT_score(maxd=14,maxw=5.5)= -39.1134 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1307557980.pdb -s /var/tmp/to_scwrl_1307557980.seq -o /var/tmp/from_scwrl_1307557980.pdb > /var/tmp/scwrl_1307557980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307557980.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.843318 # GDT_score = -37.5576 # GDT_score(maxd=8,maxw=2.9)= -37.097 # GDT_score(maxd=8,maxw=3.2)= -34.7114 # GDT_score(maxd=8,maxw=3.5)= -32.5505 # GDT_score(maxd=10,maxw=3.8)= -36.0686 # GDT_score(maxd=10,maxw=4)= -34.6828 # GDT_score(maxd=10,maxw=4.2)= -33.3949 # GDT_score(maxd=12,maxw=4.3)= -37.3161 # GDT_score(maxd=12,maxw=4.5)= -35.9931 # GDT_score(maxd=12,maxw=4.7)= -34.748 # GDT_score(maxd=14,maxw=5.2)= -35.3109 # GDT_score(maxd=14,maxw=5.5)= -33.6474 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2083240789.pdb -s /var/tmp/to_scwrl_2083240789.seq -o /var/tmp/from_scwrl_2083240789.pdb > /var/tmp/scwrl_2083240789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083240789.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0323.try1-opt2.pdb looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -34.5622 # GDT_score(maxd=8,maxw=2.9)= -32.072 # GDT_score(maxd=8,maxw=3.2)= -29.9866 # GDT_score(maxd=8,maxw=3.5)= -28.1243 # GDT_score(maxd=10,maxw=3.8)= -32.2414 # GDT_score(maxd=10,maxw=4)= -30.9657 # GDT_score(maxd=10,maxw=4.2)= -29.7984 # GDT_score(maxd=12,maxw=4.3)= -33.9599 # GDT_score(maxd=12,maxw=4.5)= -32.7373 # GDT_score(maxd=12,maxw=4.7)= -31.6018 # GDT_score(maxd=14,maxw=5.2)= -32.6293 # GDT_score(maxd=14,maxw=5.5)= -31.1602 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 2.5130000e+03 rmsd (weighted)= 1.0940456e+01 (unweighted)= 1.9596926e+01 superimposing iter= 1 total_weight= 5.6724646e+03 rmsd (weighted)= 5.4257631e+00 (unweighted)= 1.9895169e+01 superimposing iter= 2 total_weight= 2.4569548e+03 rmsd (weighted)= 4.3978051e+00 (unweighted)= 1.9962047e+01 superimposing iter= 3 total_weight= 1.7537250e+03 rmsd (weighted)= 4.2446646e+00 (unweighted)= 1.9984796e+01 superimposing iter= 4 total_weight= 1.6815209e+03 rmsd (weighted)= 4.1871154e+00 (unweighted)= 1.9996458e+01 superimposing iter= 5 total_weight= 1.6820299e+03 rmsd (weighted)= 4.1306182e+00 (unweighted)= 2.0003975e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0323)V68.C and (T0323)L72.C only 0.0000000e+00 apart, marking (T0323)L72.C as missing WARNING: atoms too close: (T0323)G69.N and (T0323)E73.N only 0.0000000e+00 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)G69.CA and (T0323)E73.CA only 0.0000000e+00 apart, marking (T0323)G69.CA as missing WARNING: atoms too close: (T0323)S108.C and (T0323)F113.C only 0.0000000e+00 apart, marking (T0323)F113.C as missing WARNING: atoms too close: (T0323)G109.N and (T0323)T114.N only 0.0000000e+00 apart, marking (T0323)G109.N as missing WARNING: atoms too close: (T0323)G109.CA and (T0323)T114.CA only 0.0000000e+00 apart, marking (T0323)G109.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)L150.C and (T0323)D151.C only 0.0000000e+00 apart, marking (T0323)D151.C as missing WARNING: atoms too close: (T0323)D151.N and (T0323)V152.N only 0.0000000e+00 apart, marking (T0323)D151.N as missing WARNING: atoms too close: (T0323)D151.CA and (T0323)V152.CA only 0.0000000e+00 apart, marking (T0323)D151.CA as missing WARNING: atoms too close: (T0323)V155.C and (T0323)G156.C only 0.0000000e+00 apart, marking (T0323)G156.C as missing WARNING: atoms too close: (T0323)G156.N and (T0323)D157.N only 0.0000000e+00 apart, marking (T0323)G156.N as missing WARNING: atoms too close: (T0323)G156.CA and (T0323)D157.CA only 0.0000000e+00 apart, marking (T0323)G156.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.880184 # GDT_score = -45.0461 # GDT_score(maxd=8,maxw=2.9)= -45.5902 # GDT_score(maxd=8,maxw=3.2)= -42.6694 # GDT_score(maxd=8,maxw=3.5)= -40.0433 # GDT_score(maxd=10,maxw=3.8)= -43.6124 # GDT_score(maxd=10,maxw=4)= -41.9482 # GDT_score(maxd=10,maxw=4.2)= -40.3597 # GDT_score(maxd=12,maxw=4.3)= -44.2688 # GDT_score(maxd=12,maxw=4.5)= -42.6694 # GDT_score(maxd=12,maxw=4.7)= -41.1529 # GDT_score(maxd=14,maxw=5.2)= -41.2808 # GDT_score(maxd=14,maxw=5.5)= -39.3237 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0323)V68.C and (T0323)L72.C only 0.0000000e+00 apart, marking (T0323)L72.C as missing WARNING: atoms too close: (T0323)G69.N and (T0323)E73.N only 0.0000000e+00 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)G69.CA and (T0323)E73.CA only 0.0000000e+00 apart, marking (T0323)G69.CA as missing WARNING: atoms too close: (T0323)S108.C and (T0323)F113.C only 0.0000000e+00 apart, marking (T0323)F113.C as missing WARNING: atoms too close: (T0323)G109.N and (T0323)T114.N only 0.0000000e+00 apart, marking (T0323)G109.N as missing WARNING: atoms too close: (T0323)G109.CA and (T0323)T114.CA only 0.0000000e+00 apart, marking (T0323)G109.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.861751 # GDT_score = -38.1336 # GDT_score(maxd=8,maxw=2.9)= -37.9185 # GDT_score(maxd=8,maxw=3.2)= -35.4593 # GDT_score(maxd=8,maxw=3.5)= -33.2314 # GDT_score(maxd=10,maxw=3.8)= -36.8397 # GDT_score(maxd=10,maxw=4)= -35.4245 # GDT_score(maxd=10,maxw=4.2)= -34.1031 # GDT_score(maxd=12,maxw=4.3)= -38.1216 # GDT_score(maxd=12,maxw=4.5)= -36.7623 # GDT_score(maxd=12,maxw=4.7)= -35.4844 # GDT_score(maxd=14,maxw=5.2)= -36.0489 # GDT_score(maxd=14,maxw=5.5)= -34.3326 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0323)K12.C and (T0323)D18.C only 0.0000000e+00 apart, marking (T0323)D18.C as missing WARNING: atoms too close: (T0323)T13.N and (T0323)S19.N only 0.0000000e+00 apart, marking (T0323)T13.N as missing WARNING: atoms too close: (T0323)T13.CA and (T0323)S19.CA only 0.0000000e+00 apart, marking (T0323)T13.CA as missing WARNING: atoms too close: (T0323)D112.C and (T0323)L116.C only 0.0000000e+00 apart, marking (T0323)L116.C as missing WARNING: atoms too close: (T0323)F113.N and (T0323)E117.N only 0.0000000e+00 apart, marking (T0323)F113.N as missing WARNING: atoms too close: (T0323)F113.CA and (T0323)E117.CA only 0.0000000e+00 apart, marking (T0323)F113.CA as missing WARNING: atoms too close: (T0323)A164.C and (T0323)G171.C only 0.0000000e+00 apart, marking (T0323)G171.C as missing WARNING: atoms too close: (T0323)K165.N and (T0323)E172.N only 0.0000000e+00 apart, marking (T0323)K165.N as missing WARNING: atoms too close: (T0323)K165.CA and (T0323)E172.CA only 0.0000000e+00 apart, marking (T0323)K165.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0323)L67.C and (T0323)V68.C only 0.0000000e+00 apart, marking (T0323)V68.C as missing WARNING: atoms too close: (T0323)V68.N and (T0323)G69.N only 0.0000000e+00 apart, marking (T0323)V68.N as missing WARNING: atoms too close: (T0323)V68.CA and (T0323)G69.CA only 0.0000000e+00 apart, marking (T0323)V68.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)E126.C only 0.0000000e+00 apart, marking (T0323)E126.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)K127.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)K127.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)R149.C and (T0323)L150.C only 0.0000000e+00 apart, marking (T0323)L150.C as missing WARNING: atoms too close: (T0323)L150.N and (T0323)D151.N only 0.0000000e+00 apart, marking (T0323)L150.N as missing WARNING: atoms too close: (T0323)L150.CA and (T0323)D151.CA only 0.0000000e+00 apart, marking (T0323)L150.CA as missing WARNING: atoms too close: (T0323)L167.C and (T0323)Y168.C only 0.0000000e+00 apart, marking (T0323)Y168.C as missing WARNING: atoms too close: (T0323)Y168.N and (T0323)G169.N only 0.0000000e+00 apart, marking (T0323)Y168.N as missing WARNING: atoms too close: (T0323)Y168.CA and (T0323)G169.CA only 0.0000000e+00 apart, marking (T0323)Y168.CA as missing WARNING: atoms too close: (T0323)G173.C and (T0323)D174.C only 0.0000000e+00 apart, marking (T0323)D174.C as missing WARNING: atoms too close: (T0323)D174.N and (T0323)G175.N only 0.0000000e+00 apart, marking (T0323)D174.N as missing WARNING: atoms too close: (T0323)D174.CA and (T0323)G175.CA only 0.0000000e+00 apart, marking (T0323)D174.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0323)D112.C and (T0323)E117.C only 0.0000000e+00 apart, marking (T0323)E117.C as missing WARNING: atoms too close: (T0323)F113.N and (T0323)G118.N only 0.0000000e+00 apart, marking (T0323)F113.N as missing WARNING: atoms too close: (T0323)F113.CA and (T0323)G118.CA only 0.0000000e+00 apart, marking (T0323)F113.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)D151.C and (T0323)L153.C only 0.0000000e+00 apart, marking (T0323)L153.C as missing WARNING: atoms too close: (T0323)V152.N and (T0323)S154.N only 0.0000000e+00 apart, marking (T0323)V152.N as missing WARNING: atoms too close: (T0323)V152.CA and (T0323)S154.CA only 0.0000000e+00 apart, marking (T0323)V152.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0323.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_579572755.pdb -s /var/tmp/to_scwrl_579572755.seq -o /var/tmp/from_scwrl_579572755.pdb > /var/tmp/scwrl_579572755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_579572755.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1837855886.pdb -s /var/tmp/to_scwrl_1837855886.seq -o /var/tmp/from_scwrl_1837855886.pdb > /var/tmp/scwrl_1837855886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1837855886.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_565704767.pdb -s /var/tmp/to_scwrl_565704767.seq -o /var/tmp/from_scwrl_565704767.pdb > /var/tmp/scwrl_565704767.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565704767.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1005425588.pdb -s /var/tmp/to_scwrl_1005425588.seq -o /var/tmp/from_scwrl_1005425588.pdb > /var/tmp/scwrl_1005425588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1005425588.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_156334745.pdb -s /var/tmp/to_scwrl_156334745.seq -o /var/tmp/from_scwrl_156334745.pdb > /var/tmp/scwrl_156334745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_156334745.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_522326975.pdb -s /var/tmp/to_scwrl_522326975.seq -o /var/tmp/from_scwrl_522326975.pdb > /var/tmp/scwrl_522326975.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_522326975.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1031709687.pdb -s /var/tmp/to_scwrl_1031709687.seq -o /var/tmp/from_scwrl_1031709687.pdb > /var/tmp/scwrl_1031709687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031709687.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1842736535.pdb -s /var/tmp/to_scwrl_1842736535.seq -o /var/tmp/from_scwrl_1842736535.pdb > /var/tmp/scwrl_1842736535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842736535.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1114570256.pdb -s /var/tmp/to_scwrl_1114570256.seq -o /var/tmp/from_scwrl_1114570256.pdb > /var/tmp/scwrl_1114570256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1114570256.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1988504115.pdb -s /var/tmp/to_scwrl_1988504115.seq -o /var/tmp/from_scwrl_1988504115.pdb > /var/tmp/scwrl_1988504115.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1988504115.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_709950078.pdb -s /var/tmp/to_scwrl_709950078.seq -o /var/tmp/from_scwrl_709950078.pdb > /var/tmp/scwrl_709950078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_709950078.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1931810302.pdb -s /var/tmp/to_scwrl_1931810302.seq -o /var/tmp/from_scwrl_1931810302.pdb > /var/tmp/scwrl_1931810302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931810302.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_721557451.pdb -s /var/tmp/to_scwrl_721557451.seq -o /var/tmp/from_scwrl_721557451.pdb > /var/tmp/scwrl_721557451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721557451.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1218258947.pdb -s /var/tmp/to_scwrl_1218258947.seq -o /var/tmp/from_scwrl_1218258947.pdb > /var/tmp/scwrl_1218258947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218258947.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1905820242.pdb -s /var/tmp/to_scwrl_1905820242.seq -o /var/tmp/from_scwrl_1905820242.pdb > /var/tmp/scwrl_1905820242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1905820242.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_557076997.pdb -s /var/tmp/to_scwrl_557076997.seq -o /var/tmp/from_scwrl_557076997.pdb > /var/tmp/scwrl_557076997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557076997.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1111490289.pdb -s /var/tmp/to_scwrl_1111490289.seq -o /var/tmp/from_scwrl_1111490289.pdb > /var/tmp/scwrl_1111490289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111490289.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_874956994.pdb -s /var/tmp/to_scwrl_874956994.seq -o /var/tmp/from_scwrl_874956994.pdb > /var/tmp/scwrl_874956994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874956994.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1195975077.pdb -s /var/tmp/to_scwrl_1195975077.seq -o /var/tmp/from_scwrl_1195975077.pdb > /var/tmp/scwrl_1195975077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1195975077.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_463784394.pdb -s /var/tmp/to_scwrl_463784394.seq -o /var/tmp/from_scwrl_463784394.pdb > /var/tmp/scwrl_463784394.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_463784394.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1499705011.pdb -s /var/tmp/to_scwrl_1499705011.seq -o /var/tmp/from_scwrl_1499705011.pdb > /var/tmp/scwrl_1499705011.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1499705011.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_423388395.pdb -s /var/tmp/to_scwrl_423388395.seq -o /var/tmp/from_scwrl_423388395.pdb > /var/tmp/scwrl_423388395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_423388395.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_480657041.pdb -s /var/tmp/to_scwrl_480657041.seq -o /var/tmp/from_scwrl_480657041.pdb > /var/tmp/scwrl_480657041.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_480657041.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_234538658.pdb -s /var/tmp/to_scwrl_234538658.seq -o /var/tmp/from_scwrl_234538658.pdb > /var/tmp/scwrl_234538658.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_234538658.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1073859581.pdb -s /var/tmp/to_scwrl_1073859581.seq -o /var/tmp/from_scwrl_1073859581.pdb > /var/tmp/scwrl_1073859581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073859581.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1607842508.pdb -s /var/tmp/to_scwrl_1607842508.seq -o /var/tmp/from_scwrl_1607842508.pdb > /var/tmp/scwrl_1607842508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1607842508.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1348908632.pdb -s /var/tmp/to_scwrl_1348908632.seq -o /var/tmp/from_scwrl_1348908632.pdb > /var/tmp/scwrl_1348908632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1348908632.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1870587284.pdb -s /var/tmp/to_scwrl_1870587284.seq -o /var/tmp/from_scwrl_1870587284.pdb > /var/tmp/scwrl_1870587284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870587284.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_213931931.pdb -s /var/tmp/to_scwrl_213931931.seq -o /var/tmp/from_scwrl_213931931.pdb > /var/tmp/scwrl_213931931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_213931931.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_508982966.pdb -s /var/tmp/to_scwrl_508982966.seq -o /var/tmp/from_scwrl_508982966.pdb > /var/tmp/scwrl_508982966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508982966.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1806344426.pdb -s /var/tmp/to_scwrl_1806344426.seq -o /var/tmp/from_scwrl_1806344426.pdb > /var/tmp/scwrl_1806344426.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1806344426.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_793504686.pdb -s /var/tmp/to_scwrl_793504686.seq -o /var/tmp/from_scwrl_793504686.pdb > /var/tmp/scwrl_793504686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_793504686.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_199355205.pdb -s /var/tmp/to_scwrl_199355205.seq -o /var/tmp/from_scwrl_199355205.pdb > /var/tmp/scwrl_199355205.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_199355205.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_224565546.pdb -s /var/tmp/to_scwrl_224565546.seq -o /var/tmp/from_scwrl_224565546.pdb > /var/tmp/scwrl_224565546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_224565546.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1798930273.pdb -s /var/tmp/to_scwrl_1798930273.seq -o /var/tmp/from_scwrl_1798930273.pdb > /var/tmp/scwrl_1798930273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1798930273.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_355689950.pdb -s /var/tmp/to_scwrl_355689950.seq -o /var/tmp/from_scwrl_355689950.pdb > /var/tmp/scwrl_355689950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355689950.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_746892522.pdb -s /var/tmp/to_scwrl_746892522.seq -o /var/tmp/from_scwrl_746892522.pdb > /var/tmp/scwrl_746892522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_746892522.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_683156313.pdb -s /var/tmp/to_scwrl_683156313.seq -o /var/tmp/from_scwrl_683156313.pdb > /var/tmp/scwrl_683156313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_683156313.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_50942839.pdb -s /var/tmp/to_scwrl_50942839.seq -o /var/tmp/from_scwrl_50942839.pdb > /var/tmp/scwrl_50942839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_50942839.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1861462778.pdb -s /var/tmp/to_scwrl_1861462778.seq -o /var/tmp/from_scwrl_1861462778.pdb > /var/tmp/scwrl_1861462778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1861462778.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_524176781.pdb -s /var/tmp/to_scwrl_524176781.seq -o /var/tmp/from_scwrl_524176781.pdb > /var/tmp/scwrl_524176781.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_524176781.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_760892917.pdb -s /var/tmp/to_scwrl_760892917.seq -o /var/tmp/from_scwrl_760892917.pdb > /var/tmp/scwrl_760892917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_760892917.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1645789434.pdb -s /var/tmp/to_scwrl_1645789434.seq -o /var/tmp/from_scwrl_1645789434.pdb > /var/tmp/scwrl_1645789434.log Error: Couldn't open file /var/tmp/from_scwrl_1645789434.pdb or /var/tmp/from_scwrl_1645789434.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1645789434_b.pdb or decoys//var/tmp/from_scwrl_1645789434_b.pdb.gz for input Trying /var/tmp/from_scwrl_1645789434_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1645789434_b.pdb or /var/tmp/from_scwrl_1645789434_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1645789434_a.pdb or decoys//var/tmp/from_scwrl_1645789434_a.pdb.gz for input Trying /var/tmp/from_scwrl_1645789434_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1645789434_a.pdb or /var/tmp/from_scwrl_1645789434_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1645789434.pdb or /var/tmp/from_scwrl_1645789434_b.pdb or /var/tmp/from_scwrl_1645789434_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1245734231.pdb -s /var/tmp/to_scwrl_1245734231.seq -o /var/tmp/from_scwrl_1245734231.pdb > /var/tmp/scwrl_1245734231.log Error: Couldn't open file /var/tmp/from_scwrl_1245734231.pdb or /var/tmp/from_scwrl_1245734231.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1245734231_b.pdb or decoys//var/tmp/from_scwrl_1245734231_b.pdb.gz for input Trying /var/tmp/from_scwrl_1245734231_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1245734231_b.pdb or /var/tmp/from_scwrl_1245734231_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1245734231_a.pdb or decoys//var/tmp/from_scwrl_1245734231_a.pdb.gz for input Trying /var/tmp/from_scwrl_1245734231_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1245734231_a.pdb or /var/tmp/from_scwrl_1245734231_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1245734231.pdb or /var/tmp/from_scwrl_1245734231_b.pdb or /var/tmp/from_scwrl_1245734231_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1979151864.pdb -s /var/tmp/to_scwrl_1979151864.seq -o /var/tmp/from_scwrl_1979151864.pdb > /var/tmp/scwrl_1979151864.log Error: Couldn't open file /var/tmp/from_scwrl_1979151864.pdb or /var/tmp/from_scwrl_1979151864.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1979151864_b.pdb or decoys//var/tmp/from_scwrl_1979151864_b.pdb.gz for input Trying /var/tmp/from_scwrl_1979151864_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1979151864_b.pdb or /var/tmp/from_scwrl_1979151864_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1979151864_a.pdb or decoys//var/tmp/from_scwrl_1979151864_a.pdb.gz for input Trying /var/tmp/from_scwrl_1979151864_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1979151864_a.pdb or /var/tmp/from_scwrl_1979151864_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1979151864.pdb or /var/tmp/from_scwrl_1979151864_b.pdb or /var/tmp/from_scwrl_1979151864_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1404126029.pdb -s /var/tmp/to_scwrl_1404126029.seq -o /var/tmp/from_scwrl_1404126029.pdb > /var/tmp/scwrl_1404126029.log Error: Couldn't open file /var/tmp/from_scwrl_1404126029.pdb or /var/tmp/from_scwrl_1404126029.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1404126029_b.pdb or decoys//var/tmp/from_scwrl_1404126029_b.pdb.gz for input Trying /var/tmp/from_scwrl_1404126029_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1404126029_b.pdb or /var/tmp/from_scwrl_1404126029_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1404126029_a.pdb or decoys//var/tmp/from_scwrl_1404126029_a.pdb.gz for input Trying /var/tmp/from_scwrl_1404126029_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1404126029_a.pdb or /var/tmp/from_scwrl_1404126029_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1404126029.pdb or /var/tmp/from_scwrl_1404126029_b.pdb or /var/tmp/from_scwrl_1404126029_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1802811228.pdb -s /var/tmp/to_scwrl_1802811228.seq -o /var/tmp/from_scwrl_1802811228.pdb > /var/tmp/scwrl_1802811228.log Error: Couldn't open file /var/tmp/from_scwrl_1802811228.pdb or /var/tmp/from_scwrl_1802811228.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1802811228_b.pdb or decoys//var/tmp/from_scwrl_1802811228_b.pdb.gz for input Trying /var/tmp/from_scwrl_1802811228_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1802811228_b.pdb or /var/tmp/from_scwrl_1802811228_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1802811228_a.pdb or decoys//var/tmp/from_scwrl_1802811228_a.pdb.gz for input Trying /var/tmp/from_scwrl_1802811228_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1802811228_a.pdb or /var/tmp/from_scwrl_1802811228_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1802811228.pdb or /var/tmp/from_scwrl_1802811228_b.pdb or /var/tmp/from_scwrl_1802811228_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_943158508.pdb -s /var/tmp/to_scwrl_943158508.seq -o /var/tmp/from_scwrl_943158508.pdb > /var/tmp/scwrl_943158508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_943158508.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_131599377.pdb -s /var/tmp/to_scwrl_131599377.seq -o /var/tmp/from_scwrl_131599377.pdb > /var/tmp/scwrl_131599377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_131599377.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_851302659.pdb -s /var/tmp/to_scwrl_851302659.seq -o /var/tmp/from_scwrl_851302659.pdb > /var/tmp/scwrl_851302659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_851302659.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1406942901.pdb -s /var/tmp/to_scwrl_1406942901.seq -o /var/tmp/from_scwrl_1406942901.pdb > /var/tmp/scwrl_1406942901.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406942901.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1631304388.pdb -s /var/tmp/to_scwrl_1631304388.seq -o /var/tmp/from_scwrl_1631304388.pdb > /var/tmp/scwrl_1631304388.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1631304388.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1274691054.pdb -s /var/tmp/to_scwrl_1274691054.seq -o /var/tmp/from_scwrl_1274691054.pdb > /var/tmp/scwrl_1274691054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274691054.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1887599942.pdb -s /var/tmp/to_scwrl_1887599942.seq -o /var/tmp/from_scwrl_1887599942.pdb > /var/tmp/scwrl_1887599942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887599942.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1865843046.pdb -s /var/tmp/to_scwrl_1865843046.seq -o /var/tmp/from_scwrl_1865843046.pdb > /var/tmp/scwrl_1865843046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1865843046.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_201066989.pdb -s /var/tmp/to_scwrl_201066989.seq -o /var/tmp/from_scwrl_201066989.pdb > /var/tmp/scwrl_201066989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_201066989.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1347958804.pdb -s /var/tmp/to_scwrl_1347958804.seq -o /var/tmp/from_scwrl_1347958804.pdb > /var/tmp/scwrl_1347958804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1347958804.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1067268032.pdb -s /var/tmp/to_scwrl_1067268032.seq -o /var/tmp/from_scwrl_1067268032.pdb > /var/tmp/scwrl_1067268032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1067268032.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2071654273.pdb -s /var/tmp/to_scwrl_2071654273.seq -o /var/tmp/from_scwrl_2071654273.pdb > /var/tmp/scwrl_2071654273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2071654273.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1561890735.pdb -s /var/tmp/to_scwrl_1561890735.seq -o /var/tmp/from_scwrl_1561890735.pdb > /var/tmp/scwrl_1561890735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1561890735.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1576250997.pdb -s /var/tmp/to_scwrl_1576250997.seq -o /var/tmp/from_scwrl_1576250997.pdb > /var/tmp/scwrl_1576250997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1576250997.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1730515052.pdb -s /var/tmp/to_scwrl_1730515052.seq -o /var/tmp/from_scwrl_1730515052.pdb > /var/tmp/scwrl_1730515052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1730515052.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_207911774.pdb -s /var/tmp/to_scwrl_207911774.seq -o /var/tmp/from_scwrl_207911774.pdb > /var/tmp/scwrl_207911774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_207911774.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1775606202.pdb -s /var/tmp/to_scwrl_1775606202.seq -o /var/tmp/from_scwrl_1775606202.pdb > /var/tmp/scwrl_1775606202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775606202.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1955080598.pdb -s /var/tmp/to_scwrl_1955080598.seq -o /var/tmp/from_scwrl_1955080598.pdb > /var/tmp/scwrl_1955080598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1955080598.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2006842047.pdb -s /var/tmp/to_scwrl_2006842047.seq -o /var/tmp/from_scwrl_2006842047.pdb > /var/tmp/scwrl_2006842047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006842047.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2131296152.pdb -s /var/tmp/to_scwrl_2131296152.seq -o /var/tmp/from_scwrl_2131296152.pdb > /var/tmp/scwrl_2131296152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2131296152.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_554489473.pdb -s /var/tmp/to_scwrl_554489473.seq -o /var/tmp/from_scwrl_554489473.pdb > /var/tmp/scwrl_554489473.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_554489473.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_542514713.pdb -s /var/tmp/to_scwrl_542514713.seq -o /var/tmp/from_scwrl_542514713.pdb > /var/tmp/scwrl_542514713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_542514713.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_34755344.pdb -s /var/tmp/to_scwrl_34755344.seq -o /var/tmp/from_scwrl_34755344.pdb > /var/tmp/scwrl_34755344.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34755344.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_268468605.pdb -s /var/tmp/to_scwrl_268468605.seq -o /var/tmp/from_scwrl_268468605.pdb > /var/tmp/scwrl_268468605.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_268468605.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1066691494.pdb -s /var/tmp/to_scwrl_1066691494.seq -o /var/tmp/from_scwrl_1066691494.pdb > /var/tmp/scwrl_1066691494.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066691494.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_795648261.pdb -s /var/tmp/to_scwrl_795648261.seq -o /var/tmp/from_scwrl_795648261.pdb > /var/tmp/scwrl_795648261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_795648261.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1914258039.pdb -s /var/tmp/to_scwrl_1914258039.seq -o /var/tmp/from_scwrl_1914258039.pdb > /var/tmp/scwrl_1914258039.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1914258039.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_164942078.pdb -s /var/tmp/to_scwrl_164942078.seq -o /var/tmp/from_scwrl_164942078.pdb > /var/tmp/scwrl_164942078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_164942078.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_627316479.pdb -s /var/tmp/to_scwrl_627316479.seq -o /var/tmp/from_scwrl_627316479.pdb > /var/tmp/scwrl_627316479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_627316479.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1170900421.pdb -s /var/tmp/to_scwrl_1170900421.seq -o /var/tmp/from_scwrl_1170900421.pdb > /var/tmp/scwrl_1170900421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1170900421.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1967753306.pdb -s /var/tmp/to_scwrl_1967753306.seq -o /var/tmp/from_scwrl_1967753306.pdb > /var/tmp/scwrl_1967753306.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1967753306.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1570474986.pdb -s /var/tmp/to_scwrl_1570474986.seq -o /var/tmp/from_scwrl_1570474986.pdb > /var/tmp/scwrl_1570474986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1570474986.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1302499798.pdb -s /var/tmp/to_scwrl_1302499798.seq -o /var/tmp/from_scwrl_1302499798.pdb > /var/tmp/scwrl_1302499798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1302499798.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_671572319.pdb -s /var/tmp/to_scwrl_671572319.seq -o /var/tmp/from_scwrl_671572319.pdb > /var/tmp/scwrl_671572319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_671572319.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_829934241.pdb -s /var/tmp/to_scwrl_829934241.seq -o /var/tmp/from_scwrl_829934241.pdb > /var/tmp/scwrl_829934241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_829934241.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_786320540.pdb -s /var/tmp/to_scwrl_786320540.seq -o /var/tmp/from_scwrl_786320540.pdb > /var/tmp/scwrl_786320540.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786320540.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1946263373.pdb -s /var/tmp/to_scwrl_1946263373.seq -o /var/tmp/from_scwrl_1946263373.pdb > /var/tmp/scwrl_1946263373.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946263373.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_570050537.pdb -s /var/tmp/to_scwrl_570050537.seq -o /var/tmp/from_scwrl_570050537.pdb > /var/tmp/scwrl_570050537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_570050537.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_504679939.pdb -s /var/tmp/to_scwrl_504679939.seq -o /var/tmp/from_scwrl_504679939.pdb > /var/tmp/scwrl_504679939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_504679939.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2147330362.pdb -s /var/tmp/to_scwrl_2147330362.seq -o /var/tmp/from_scwrl_2147330362.pdb > /var/tmp/scwrl_2147330362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2147330362.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1918009341.pdb -s /var/tmp/to_scwrl_1918009341.seq -o /var/tmp/from_scwrl_1918009341.pdb > /var/tmp/scwrl_1918009341.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1918009341.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1571947970.pdb -s /var/tmp/to_scwrl_1571947970.seq -o /var/tmp/from_scwrl_1571947970.pdb > /var/tmp/scwrl_1571947970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1571947970.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2071500988.pdb -s /var/tmp/to_scwrl_2071500988.seq -o /var/tmp/from_scwrl_2071500988.pdb > /var/tmp/scwrl_2071500988.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2071500988.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1332416429.pdb -s /var/tmp/to_scwrl_1332416429.seq -o /var/tmp/from_scwrl_1332416429.pdb > /var/tmp/scwrl_1332416429.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1332416429.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1000715321.pdb -s /var/tmp/to_scwrl_1000715321.seq -o /var/tmp/from_scwrl_1000715321.pdb > /var/tmp/scwrl_1000715321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000715321.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1654532393.pdb -s /var/tmp/to_scwrl_1654532393.seq -o /var/tmp/from_scwrl_1654532393.pdb > /var/tmp/scwrl_1654532393.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1654532393.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1540328203.pdb -s /var/tmp/to_scwrl_1540328203.seq -o /var/tmp/from_scwrl_1540328203.pdb > /var/tmp/scwrl_1540328203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1540328203.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_628837876.pdb -s /var/tmp/to_scwrl_628837876.seq -o /var/tmp/from_scwrl_628837876.pdb > /var/tmp/scwrl_628837876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628837876.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1462129344.pdb -s /var/tmp/to_scwrl_1462129344.seq -o /var/tmp/from_scwrl_1462129344.pdb > /var/tmp/scwrl_1462129344.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1462129344.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1399686603.pdb -s /var/tmp/to_scwrl_1399686603.seq -o /var/tmp/from_scwrl_1399686603.pdb > /var/tmp/scwrl_1399686603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1399686603.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_612650382.pdb -s /var/tmp/to_scwrl_612650382.seq -o /var/tmp/from_scwrl_612650382.pdb > /var/tmp/scwrl_612650382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_612650382.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2016618818.pdb -s /var/tmp/to_scwrl_2016618818.seq -o /var/tmp/from_scwrl_2016618818.pdb > /var/tmp/scwrl_2016618818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2016618818.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1942201316.pdb -s /var/tmp/to_scwrl_1942201316.seq -o /var/tmp/from_scwrl_1942201316.pdb > /var/tmp/scwrl_1942201316.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1942201316.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_647405726.pdb -s /var/tmp/to_scwrl_647405726.seq -o /var/tmp/from_scwrl_647405726.pdb > /var/tmp/scwrl_647405726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_647405726.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_137603776.pdb -s /var/tmp/to_scwrl_137603776.seq -o /var/tmp/from_scwrl_137603776.pdb > /var/tmp/scwrl_137603776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_137603776.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_861409163.pdb -s /var/tmp/to_scwrl_861409163.seq -o /var/tmp/from_scwrl_861409163.pdb > /var/tmp/scwrl_861409163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_861409163.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1443053987.pdb -s /var/tmp/to_scwrl_1443053987.seq -o /var/tmp/from_scwrl_1443053987.pdb > /var/tmp/scwrl_1443053987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1443053987.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2051861815.pdb -s /var/tmp/to_scwrl_2051861815.seq -o /var/tmp/from_scwrl_2051861815.pdb > /var/tmp/scwrl_2051861815.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2051861815.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1026351241.pdb -s /var/tmp/to_scwrl_1026351241.seq -o /var/tmp/from_scwrl_1026351241.pdb > /var/tmp/scwrl_1026351241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1026351241.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2070370466.pdb -s /var/tmp/to_scwrl_2070370466.seq -o /var/tmp/from_scwrl_2070370466.pdb > /var/tmp/scwrl_2070370466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2070370466.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1075278589.pdb -s /var/tmp/to_scwrl_1075278589.seq -o /var/tmp/from_scwrl_1075278589.pdb > /var/tmp/scwrl_1075278589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1075278589.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_846620900.pdb -s /var/tmp/to_scwrl_846620900.seq -o /var/tmp/from_scwrl_846620900.pdb > /var/tmp/scwrl_846620900.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_846620900.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1493361805.pdb -s /var/tmp/to_scwrl_1493361805.seq -o /var/tmp/from_scwrl_1493361805.pdb > /var/tmp/scwrl_1493361805.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493361805.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_230294742.pdb -s /var/tmp/to_scwrl_230294742.seq -o /var/tmp/from_scwrl_230294742.pdb > /var/tmp/scwrl_230294742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_230294742.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1518193218.pdb -s /var/tmp/to_scwrl_1518193218.seq -o /var/tmp/from_scwrl_1518193218.pdb > /var/tmp/scwrl_1518193218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1518193218.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_175812399.pdb -s /var/tmp/to_scwrl_175812399.seq -o /var/tmp/from_scwrl_175812399.pdb > /var/tmp/scwrl_175812399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_175812399.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1016615282.pdb -s /var/tmp/to_scwrl_1016615282.seq -o /var/tmp/from_scwrl_1016615282.pdb > /var/tmp/scwrl_1016615282.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1016615282.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1316972944.pdb -s /var/tmp/to_scwrl_1316972944.seq -o /var/tmp/from_scwrl_1316972944.pdb > /var/tmp/scwrl_1316972944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1316972944.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_745862936.pdb -s /var/tmp/to_scwrl_745862936.seq -o /var/tmp/from_scwrl_745862936.pdb > /var/tmp/scwrl_745862936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_745862936.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1521295221.pdb -s /var/tmp/to_scwrl_1521295221.seq -o /var/tmp/from_scwrl_1521295221.pdb > /var/tmp/scwrl_1521295221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1521295221.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1316819659.pdb -s /var/tmp/to_scwrl_1316819659.seq -o /var/tmp/from_scwrl_1316819659.pdb > /var/tmp/scwrl_1316819659.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1316819659.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_516388630.pdb -s /var/tmp/to_scwrl_516388630.seq -o /var/tmp/from_scwrl_516388630.pdb > /var/tmp/scwrl_516388630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_516388630.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_945759545.pdb -s /var/tmp/to_scwrl_945759545.seq -o /var/tmp/from_scwrl_945759545.pdb > /var/tmp/scwrl_945759545.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_945759545.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1240837000.pdb -s /var/tmp/to_scwrl_1240837000.seq -o /var/tmp/from_scwrl_1240837000.pdb > /var/tmp/scwrl_1240837000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1240837000.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1848805059.pdb -s /var/tmp/to_scwrl_1848805059.seq -o /var/tmp/from_scwrl_1848805059.pdb > /var/tmp/scwrl_1848805059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1848805059.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1946474866.pdb -s /var/tmp/to_scwrl_1946474866.seq -o /var/tmp/from_scwrl_1946474866.pdb > /var/tmp/scwrl_1946474866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946474866.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_747885747.pdb -s /var/tmp/to_scwrl_747885747.seq -o /var/tmp/from_scwrl_747885747.pdb > /var/tmp/scwrl_747885747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747885747.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1241649615.pdb -s /var/tmp/to_scwrl_1241649615.seq -o /var/tmp/from_scwrl_1241649615.pdb > /var/tmp/scwrl_1241649615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1241649615.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_427829095.pdb -s /var/tmp/to_scwrl_427829095.seq -o /var/tmp/from_scwrl_427829095.pdb > /var/tmp/scwrl_427829095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_427829095.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_62531445.pdb -s /var/tmp/to_scwrl_62531445.seq -o /var/tmp/from_scwrl_62531445.pdb > /var/tmp/scwrl_62531445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62531445.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_493852572.pdb -s /var/tmp/to_scwrl_493852572.seq -o /var/tmp/from_scwrl_493852572.pdb > /var/tmp/scwrl_493852572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_493852572.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1040479477.pdb -s /var/tmp/to_scwrl_1040479477.seq -o /var/tmp/from_scwrl_1040479477.pdb > /var/tmp/scwrl_1040479477.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1040479477.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2079150263.pdb -s /var/tmp/to_scwrl_2079150263.seq -o /var/tmp/from_scwrl_2079150263.pdb > /var/tmp/scwrl_2079150263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2079150263.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_288570241.pdb -s /var/tmp/to_scwrl_288570241.seq -o /var/tmp/from_scwrl_288570241.pdb > /var/tmp/scwrl_288570241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_288570241.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1687885203.pdb -s /var/tmp/to_scwrl_1687885203.seq -o /var/tmp/from_scwrl_1687885203.pdb > /var/tmp/scwrl_1687885203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1687885203.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_69270392.pdb -s /var/tmp/to_scwrl_69270392.seq -o /var/tmp/from_scwrl_69270392.pdb > /var/tmp/scwrl_69270392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69270392.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1149979403.pdb -s /var/tmp/to_scwrl_1149979403.seq -o /var/tmp/from_scwrl_1149979403.pdb > /var/tmp/scwrl_1149979403.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1149979403.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_983455544.pdb -s /var/tmp/to_scwrl_983455544.seq -o /var/tmp/from_scwrl_983455544.pdb > /var/tmp/scwrl_983455544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_983455544.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2121132207.pdb -s /var/tmp/to_scwrl_2121132207.seq -o /var/tmp/from_scwrl_2121132207.pdb > /var/tmp/scwrl_2121132207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2121132207.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_28846997.pdb -s /var/tmp/to_scwrl_28846997.seq -o /var/tmp/from_scwrl_28846997.pdb > /var/tmp/scwrl_28846997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28846997.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_906342363.pdb -s /var/tmp/to_scwrl_906342363.seq -o /var/tmp/from_scwrl_906342363.pdb > /var/tmp/scwrl_906342363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_906342363.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1048927150.pdb -s /var/tmp/to_scwrl_1048927150.seq -o /var/tmp/from_scwrl_1048927150.pdb > /var/tmp/scwrl_1048927150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048927150.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_875467898.pdb -s /var/tmp/to_scwrl_875467898.seq -o /var/tmp/from_scwrl_875467898.pdb > /var/tmp/scwrl_875467898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_875467898.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_252220521.pdb -s /var/tmp/to_scwrl_252220521.seq -o /var/tmp/from_scwrl_252220521.pdb > /var/tmp/scwrl_252220521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_252220521.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1279221891.pdb -s /var/tmp/to_scwrl_1279221891.seq -o /var/tmp/from_scwrl_1279221891.pdb > /var/tmp/scwrl_1279221891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1279221891.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_246177469.pdb -s /var/tmp/to_scwrl_246177469.seq -o /var/tmp/from_scwrl_246177469.pdb > /var/tmp/scwrl_246177469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_246177469.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_428032920.pdb -s /var/tmp/to_scwrl_428032920.seq -o /var/tmp/from_scwrl_428032920.pdb > /var/tmp/scwrl_428032920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428032920.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_148353527.pdb -s /var/tmp/to_scwrl_148353527.seq -o /var/tmp/from_scwrl_148353527.pdb > /var/tmp/scwrl_148353527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_148353527.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1563150414.pdb -s /var/tmp/to_scwrl_1563150414.seq -o /var/tmp/from_scwrl_1563150414.pdb > /var/tmp/scwrl_1563150414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1563150414.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1173895856.pdb -s /var/tmp/to_scwrl_1173895856.seq -o /var/tmp/from_scwrl_1173895856.pdb > /var/tmp/scwrl_1173895856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1173895856.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1669648748.pdb -s /var/tmp/to_scwrl_1669648748.seq -o /var/tmp/from_scwrl_1669648748.pdb > /var/tmp/scwrl_1669648748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1669648748.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_732486427.pdb -s /var/tmp/to_scwrl_732486427.seq -o /var/tmp/from_scwrl_732486427.pdb > /var/tmp/scwrl_732486427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_732486427.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1690284486.pdb -s /var/tmp/to_scwrl_1690284486.seq -o /var/tmp/from_scwrl_1690284486.pdb > /var/tmp/scwrl_1690284486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1690284486.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_467924646.pdb -s /var/tmp/to_scwrl_467924646.seq -o /var/tmp/from_scwrl_467924646.pdb > /var/tmp/scwrl_467924646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_467924646.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1973323428.pdb -s /var/tmp/to_scwrl_1973323428.seq -o /var/tmp/from_scwrl_1973323428.pdb > /var/tmp/scwrl_1973323428.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1973323428.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1391605899.pdb -s /var/tmp/to_scwrl_1391605899.seq -o /var/tmp/from_scwrl_1391605899.pdb > /var/tmp/scwrl_1391605899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1391605899.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_266915865.pdb -s /var/tmp/to_scwrl_266915865.seq -o /var/tmp/from_scwrl_266915865.pdb > /var/tmp/scwrl_266915865.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_266915865.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_573725528.pdb -s /var/tmp/to_scwrl_573725528.seq -o /var/tmp/from_scwrl_573725528.pdb > /var/tmp/scwrl_573725528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573725528.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_485771868.pdb -s /var/tmp/to_scwrl_485771868.seq -o /var/tmp/from_scwrl_485771868.pdb > /var/tmp/scwrl_485771868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485771868.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_694744961.pdb -s /var/tmp/to_scwrl_694744961.seq -o /var/tmp/from_scwrl_694744961.pdb > /var/tmp/scwrl_694744961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_694744961.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_636256973.pdb -s /var/tmp/to_scwrl_636256973.seq -o /var/tmp/from_scwrl_636256973.pdb > /var/tmp/scwrl_636256973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_636256973.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_979624441.pdb -s /var/tmp/to_scwrl_979624441.seq -o /var/tmp/from_scwrl_979624441.pdb > /var/tmp/scwrl_979624441.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979624441.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1735224437.pdb -s /var/tmp/to_scwrl_1735224437.seq -o /var/tmp/from_scwrl_1735224437.pdb > /var/tmp/scwrl_1735224437.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1735224437.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_567923589.pdb -s /var/tmp/to_scwrl_567923589.seq -o /var/tmp/from_scwrl_567923589.pdb > /var/tmp/scwrl_567923589.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_567923589.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1268194681.pdb -s /var/tmp/to_scwrl_1268194681.seq -o /var/tmp/from_scwrl_1268194681.pdb > /var/tmp/scwrl_1268194681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268194681.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1275625993.pdb -s /var/tmp/to_scwrl_1275625993.seq -o /var/tmp/from_scwrl_1275625993.pdb > /var/tmp/scwrl_1275625993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1275625993.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_637193981.pdb -s /var/tmp/to_scwrl_637193981.seq -o /var/tmp/from_scwrl_637193981.pdb > /var/tmp/scwrl_637193981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637193981.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_270690439.pdb -s /var/tmp/to_scwrl_270690439.seq -o /var/tmp/from_scwrl_270690439.pdb > /var/tmp/scwrl_270690439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_270690439.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_111597890.pdb -s /var/tmp/to_scwrl_111597890.seq -o /var/tmp/from_scwrl_111597890.pdb > /var/tmp/scwrl_111597890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_111597890.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_610842541.pdb -s /var/tmp/to_scwrl_610842541.seq -o /var/tmp/from_scwrl_610842541.pdb > /var/tmp/scwrl_610842541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_610842541.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_299537436.pdb -s /var/tmp/to_scwrl_299537436.seq -o /var/tmp/from_scwrl_299537436.pdb > /var/tmp/scwrl_299537436.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_299537436.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1017940253.pdb -s /var/tmp/to_scwrl_1017940253.seq -o /var/tmp/from_scwrl_1017940253.pdb > /var/tmp/scwrl_1017940253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017940253.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1659769691.pdb -s /var/tmp/to_scwrl_1659769691.seq -o /var/tmp/from_scwrl_1659769691.pdb > /var/tmp/scwrl_1659769691.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659769691.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1175005333.pdb -s /var/tmp/to_scwrl_1175005333.seq -o /var/tmp/from_scwrl_1175005333.pdb > /var/tmp/scwrl_1175005333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1175005333.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1270160773.pdb -s /var/tmp/to_scwrl_1270160773.seq -o /var/tmp/from_scwrl_1270160773.pdb > /var/tmp/scwrl_1270160773.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1270160773.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_791507936.pdb -s /var/tmp/to_scwrl_791507936.seq -o /var/tmp/from_scwrl_791507936.pdb > /var/tmp/scwrl_791507936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_791507936.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1421182803.pdb -s /var/tmp/to_scwrl_1421182803.seq -o /var/tmp/from_scwrl_1421182803.pdb > /var/tmp/scwrl_1421182803.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1421182803.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1698193694.pdb -s /var/tmp/to_scwrl_1698193694.seq -o /var/tmp/from_scwrl_1698193694.pdb > /var/tmp/scwrl_1698193694.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1698193694.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_939861463.pdb -s /var/tmp/to_scwrl_939861463.seq -o /var/tmp/from_scwrl_939861463.pdb > /var/tmp/scwrl_939861463.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_939861463.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_836849571.pdb -s /var/tmp/to_scwrl_836849571.seq -o /var/tmp/from_scwrl_836849571.pdb > /var/tmp/scwrl_836849571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_836849571.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_724605904.pdb -s /var/tmp/to_scwrl_724605904.seq -o /var/tmp/from_scwrl_724605904.pdb > /var/tmp/scwrl_724605904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_724605904.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_462026564.pdb -s /var/tmp/to_scwrl_462026564.seq -o /var/tmp/from_scwrl_462026564.pdb > /var/tmp/scwrl_462026564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462026564.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1569335997.pdb -s /var/tmp/to_scwrl_1569335997.seq -o /var/tmp/from_scwrl_1569335997.pdb > /var/tmp/scwrl_1569335997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569335997.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_267406743.pdb -s /var/tmp/to_scwrl_267406743.seq -o /var/tmp/from_scwrl_267406743.pdb > /var/tmp/scwrl_267406743.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_267406743.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_929951211.pdb -s /var/tmp/to_scwrl_929951211.seq -o /var/tmp/from_scwrl_929951211.pdb > /var/tmp/scwrl_929951211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_929951211.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1395175778.pdb -s /var/tmp/to_scwrl_1395175778.seq -o /var/tmp/from_scwrl_1395175778.pdb > /var/tmp/scwrl_1395175778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1395175778.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1659012642.pdb -s /var/tmp/to_scwrl_1659012642.seq -o /var/tmp/from_scwrl_1659012642.pdb > /var/tmp/scwrl_1659012642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1659012642.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1196867075.pdb -s /var/tmp/to_scwrl_1196867075.seq -o /var/tmp/from_scwrl_1196867075.pdb > /var/tmp/scwrl_1196867075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196867075.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1968901307.pdb -s /var/tmp/to_scwrl_1968901307.seq -o /var/tmp/from_scwrl_1968901307.pdb > /var/tmp/scwrl_1968901307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1968901307.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2144784511.pdb -s /var/tmp/to_scwrl_2144784511.seq -o /var/tmp/from_scwrl_2144784511.pdb > /var/tmp/scwrl_2144784511.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2144784511.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1891612036.pdb -s /var/tmp/to_scwrl_1891612036.seq -o /var/tmp/from_scwrl_1891612036.pdb > /var/tmp/scwrl_1891612036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891612036.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_457674633.pdb -s /var/tmp/to_scwrl_457674633.seq -o /var/tmp/from_scwrl_457674633.pdb > /var/tmp/scwrl_457674633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457674633.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_976925305.pdb -s /var/tmp/to_scwrl_976925305.seq -o /var/tmp/from_scwrl_976925305.pdb > /var/tmp/scwrl_976925305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_976925305.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1479352827.pdb -s /var/tmp/to_scwrl_1479352827.seq -o /var/tmp/from_scwrl_1479352827.pdb > /var/tmp/scwrl_1479352827.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1479352827.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1025598223.pdb -s /var/tmp/to_scwrl_1025598223.seq -o /var/tmp/from_scwrl_1025598223.pdb > /var/tmp/scwrl_1025598223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1025598223.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_97636339.pdb -s /var/tmp/to_scwrl_97636339.seq -o /var/tmp/from_scwrl_97636339.pdb > /var/tmp/scwrl_97636339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_97636339.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_607495174.pdb -s /var/tmp/to_scwrl_607495174.seq -o /var/tmp/from_scwrl_607495174.pdb > /var/tmp/scwrl_607495174.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_607495174.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1662792203.pdb -s /var/tmp/to_scwrl_1662792203.seq -o /var/tmp/from_scwrl_1662792203.pdb > /var/tmp/scwrl_1662792203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1662792203.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_368326778.pdb -s /var/tmp/to_scwrl_368326778.seq -o /var/tmp/from_scwrl_368326778.pdb > /var/tmp/scwrl_368326778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_368326778.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_719093065.pdb -s /var/tmp/to_scwrl_719093065.seq -o /var/tmp/from_scwrl_719093065.pdb > /var/tmp/scwrl_719093065.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_719093065.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_126151098.pdb -s /var/tmp/to_scwrl_126151098.seq -o /var/tmp/from_scwrl_126151098.pdb > /var/tmp/scwrl_126151098.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126151098.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_667864215.pdb -s /var/tmp/to_scwrl_667864215.seq -o /var/tmp/from_scwrl_667864215.pdb > /var/tmp/scwrl_667864215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_667864215.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1737033317.pdb -s /var/tmp/to_scwrl_1737033317.seq -o /var/tmp/from_scwrl_1737033317.pdb > /var/tmp/scwrl_1737033317.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1737033317.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1785920789.pdb -s /var/tmp/to_scwrl_1785920789.seq -o /var/tmp/from_scwrl_1785920789.pdb > /var/tmp/scwrl_1785920789.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1785920789.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1842869548.pdb -s /var/tmp/to_scwrl_1842869548.seq -o /var/tmp/from_scwrl_1842869548.pdb > /var/tmp/scwrl_1842869548.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842869548.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_859710445.pdb -s /var/tmp/to_scwrl_859710445.seq -o /var/tmp/from_scwrl_859710445.pdb > /var/tmp/scwrl_859710445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_859710445.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_429945078.pdb -s /var/tmp/to_scwrl_429945078.seq -o /var/tmp/from_scwrl_429945078.pdb > /var/tmp/scwrl_429945078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_429945078.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1116568704.pdb -s /var/tmp/to_scwrl_1116568704.seq -o /var/tmp/from_scwrl_1116568704.pdb > /var/tmp/scwrl_1116568704.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1116568704.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_410420492.pdb -s /var/tmp/to_scwrl_410420492.seq -o /var/tmp/from_scwrl_410420492.pdb > /var/tmp/scwrl_410420492.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410420492.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1369806541.pdb -s /var/tmp/to_scwrl_1369806541.seq -o /var/tmp/from_scwrl_1369806541.pdb > /var/tmp/scwrl_1369806541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1369806541.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1953418275.pdb -s /var/tmp/to_scwrl_1953418275.seq -o /var/tmp/from_scwrl_1953418275.pdb > /var/tmp/scwrl_1953418275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1953418275.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1135026395.pdb -s /var/tmp/to_scwrl_1135026395.seq -o /var/tmp/from_scwrl_1135026395.pdb > /var/tmp/scwrl_1135026395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1135026395.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1831833105.pdb -s /var/tmp/to_scwrl_1831833105.seq -o /var/tmp/from_scwrl_1831833105.pdb > /var/tmp/scwrl_1831833105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831833105.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1375270626.pdb -s /var/tmp/to_scwrl_1375270626.seq -o /var/tmp/from_scwrl_1375270626.pdb > /var/tmp/scwrl_1375270626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375270626.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1402433138.pdb -s /var/tmp/to_scwrl_1402433138.seq -o /var/tmp/from_scwrl_1402433138.pdb > /var/tmp/scwrl_1402433138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1402433138.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_614300669.pdb -s /var/tmp/to_scwrl_614300669.seq -o /var/tmp/from_scwrl_614300669.pdb > /var/tmp/scwrl_614300669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_614300669.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_622962758.pdb -s /var/tmp/to_scwrl_622962758.seq -o /var/tmp/from_scwrl_622962758.pdb > /var/tmp/scwrl_622962758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_622962758.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_913962135.pdb -s /var/tmp/to_scwrl_913962135.seq -o /var/tmp/from_scwrl_913962135.pdb > /var/tmp/scwrl_913962135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_913962135.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1811167745.pdb -s /var/tmp/to_scwrl_1811167745.seq -o /var/tmp/from_scwrl_1811167745.pdb > /var/tmp/scwrl_1811167745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1811167745.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_444380418.pdb -s /var/tmp/to_scwrl_444380418.seq -o /var/tmp/from_scwrl_444380418.pdb > /var/tmp/scwrl_444380418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_444380418.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_911262999.pdb -s /var/tmp/to_scwrl_911262999.seq -o /var/tmp/from_scwrl_911262999.pdb > /var/tmp/scwrl_911262999.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_911262999.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1555296134.pdb -s /var/tmp/to_scwrl_1555296134.seq -o /var/tmp/from_scwrl_1555296134.pdb > /var/tmp/scwrl_1555296134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1555296134.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_902055052.pdb -s /var/tmp/to_scwrl_902055052.seq -o /var/tmp/from_scwrl_902055052.pdb > /var/tmp/scwrl_902055052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_902055052.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1888188303.pdb -s /var/tmp/to_scwrl_1888188303.seq -o /var/tmp/from_scwrl_1888188303.pdb > /var/tmp/scwrl_1888188303.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888188303.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_887165315.pdb -s /var/tmp/to_scwrl_887165315.seq -o /var/tmp/from_scwrl_887165315.pdb > /var/tmp/scwrl_887165315.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_887165315.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1927653274.pdb -s /var/tmp/to_scwrl_1927653274.seq -o /var/tmp/from_scwrl_1927653274.pdb > /var/tmp/scwrl_1927653274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1927653274.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1985824642.pdb -s /var/tmp/to_scwrl_1985824642.seq -o /var/tmp/from_scwrl_1985824642.pdb > /var/tmp/scwrl_1985824642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1985824642.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1494660489.pdb -s /var/tmp/to_scwrl_1494660489.seq -o /var/tmp/from_scwrl_1494660489.pdb > /var/tmp/scwrl_1494660489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1494660489.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 702, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 704, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 706, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 708, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1442961830.pdb -s /var/tmp/to_scwrl_1442961830.seq -o /var/tmp/from_scwrl_1442961830.pdb > /var/tmp/scwrl_1442961830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1442961830.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_206667774.pdb -s /var/tmp/to_scwrl_206667774.seq -o /var/tmp/from_scwrl_206667774.pdb > /var/tmp/scwrl_206667774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_206667774.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_66269907.pdb -s /var/tmp/to_scwrl_66269907.seq -o /var/tmp/from_scwrl_66269907.pdb > /var/tmp/scwrl_66269907.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_66269907.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1569112928.pdb -s /var/tmp/to_scwrl_1569112928.seq -o /var/tmp/from_scwrl_1569112928.pdb > /var/tmp/scwrl_1569112928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569112928.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_874531989.pdb -s /var/tmp/to_scwrl_874531989.seq -o /var/tmp/from_scwrl_874531989.pdb > /var/tmp/scwrl_874531989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874531989.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1803303224.pdb -s /var/tmp/to_scwrl_1803303224.seq -o /var/tmp/from_scwrl_1803303224.pdb > /var/tmp/scwrl_1803303224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1803303224.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1207550070.pdb -s /var/tmp/to_scwrl_1207550070.seq -o /var/tmp/from_scwrl_1207550070.pdb > /var/tmp/scwrl_1207550070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1207550070.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_569917890.pdb -s /var/tmp/to_scwrl_569917890.seq -o /var/tmp/from_scwrl_569917890.pdb > /var/tmp/scwrl_569917890.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_569917890.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_515530022.pdb -s /var/tmp/to_scwrl_515530022.seq -o /var/tmp/from_scwrl_515530022.pdb > /var/tmp/scwrl_515530022.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_515530022.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 374, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 686, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 688, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 690, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 692, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1637495149.pdb -s /var/tmp/to_scwrl_1637495149.seq -o /var/tmp/from_scwrl_1637495149.pdb > /var/tmp/scwrl_1637495149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1637495149.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1686486595.pdb -s /var/tmp/to_scwrl_1686486595.seq -o /var/tmp/from_scwrl_1686486595.pdb > /var/tmp/scwrl_1686486595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1686486595.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_925950514.pdb -s /var/tmp/to_scwrl_925950514.seq -o /var/tmp/from_scwrl_925950514.pdb > /var/tmp/scwrl_925950514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925950514.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_859818044.pdb -s /var/tmp/to_scwrl_859818044.seq -o /var/tmp/from_scwrl_859818044.pdb > /var/tmp/scwrl_859818044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_859818044.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1492421223.pdb -s /var/tmp/to_scwrl_1492421223.seq -o /var/tmp/from_scwrl_1492421223.pdb > /var/tmp/scwrl_1492421223.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492421223.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2060976909.pdb -s /var/tmp/to_scwrl_2060976909.seq -o /var/tmp/from_scwrl_2060976909.pdb > /var/tmp/scwrl_2060976909.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060976909.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)L128.O and (T0323)T129.N only 0.000 apart, marking (T0323)T129.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_544167502.pdb -s /var/tmp/to_scwrl_544167502.seq -o /var/tmp/from_scwrl_544167502.pdb > /var/tmp/scwrl_544167502.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_544167502.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_720208203.pdb -s /var/tmp/to_scwrl_720208203.seq -o /var/tmp/from_scwrl_720208203.pdb > /var/tmp/scwrl_720208203.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_720208203.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1315926401.pdb -s /var/tmp/to_scwrl_1315926401.seq -o /var/tmp/from_scwrl_1315926401.pdb > /var/tmp/scwrl_1315926401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1315926401.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)G218.O and (T0323)N219.N only 0.000 apart, marking (T0323)N219.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1158468171.pdb -s /var/tmp/to_scwrl_1158468171.seq -o /var/tmp/from_scwrl_1158468171.pdb > /var/tmp/scwrl_1158468171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1158468171.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)K36.O and (T0323)P37.N only 0.000 apart, marking (T0323)P37.N as missing WARNING: atoms too close: (T0323)V68.O and (T0323)G69.N only 0.000 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)D83.O and (T0323)E84.N only 0.000 apart, marking (T0323)E84.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1343170961.pdb -s /var/tmp/to_scwrl_1343170961.seq -o /var/tmp/from_scwrl_1343170961.pdb > /var/tmp/scwrl_1343170961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1343170961.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_82404889.pdb -s /var/tmp/to_scwrl_82404889.seq -o /var/tmp/from_scwrl_82404889.pdb > /var/tmp/scwrl_82404889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_82404889.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_822152270.pdb -s /var/tmp/to_scwrl_822152270.seq -o /var/tmp/from_scwrl_822152270.pdb > /var/tmp/scwrl_822152270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_822152270.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1787551379.pdb -s /var/tmp/to_scwrl_1787551379.seq -o /var/tmp/from_scwrl_1787551379.pdb > /var/tmp/scwrl_1787551379.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787551379.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_993667888.pdb -s /var/tmp/to_scwrl_993667888.seq -o /var/tmp/from_scwrl_993667888.pdb > /var/tmp/scwrl_993667888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_993667888.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_229964757.pdb -s /var/tmp/to_scwrl_229964757.seq -o /var/tmp/from_scwrl_229964757.pdb > /var/tmp/scwrl_229964757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_229964757.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_542122784.pdb -s /var/tmp/to_scwrl_542122784.seq -o /var/tmp/from_scwrl_542122784.pdb > /var/tmp/scwrl_542122784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_542122784.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_734372544.pdb -s /var/tmp/to_scwrl_734372544.seq -o /var/tmp/from_scwrl_734372544.pdb > /var/tmp/scwrl_734372544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_734372544.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1117130072.pdb -s /var/tmp/to_scwrl_1117130072.seq -o /var/tmp/from_scwrl_1117130072.pdb > /var/tmp/scwrl_1117130072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1117130072.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_322292411.pdb -s /var/tmp/to_scwrl_322292411.seq -o /var/tmp/from_scwrl_322292411.pdb > /var/tmp/scwrl_322292411.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_322292411.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_572713539.pdb -s /var/tmp/to_scwrl_572713539.seq -o /var/tmp/from_scwrl_572713539.pdb > /var/tmp/scwrl_572713539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_572713539.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_464306915.pdb -s /var/tmp/to_scwrl_464306915.seq -o /var/tmp/from_scwrl_464306915.pdb > /var/tmp/scwrl_464306915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_464306915.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1765254242.pdb -s /var/tmp/to_scwrl_1765254242.seq -o /var/tmp/from_scwrl_1765254242.pdb > /var/tmp/scwrl_1765254242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1765254242.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_779381313.pdb -s /var/tmp/to_scwrl_779381313.seq -o /var/tmp/from_scwrl_779381313.pdb > /var/tmp/scwrl_779381313.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779381313.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_530576822.pdb -s /var/tmp/to_scwrl_530576822.seq -o /var/tmp/from_scwrl_530576822.pdb > /var/tmp/scwrl_530576822.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530576822.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1186883523.pdb -s /var/tmp/to_scwrl_1186883523.seq -o /var/tmp/from_scwrl_1186883523.pdb > /var/tmp/scwrl_1186883523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1186883523.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1653913301.pdb -s /var/tmp/to_scwrl_1653913301.seq -o /var/tmp/from_scwrl_1653913301.pdb > /var/tmp/scwrl_1653913301.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653913301.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_186396399.pdb -s /var/tmp/to_scwrl_186396399.seq -o /var/tmp/from_scwrl_186396399.pdb > /var/tmp/scwrl_186396399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_186396399.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 51.3362 sec, elapsed time= 532.753 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 74.8297 shub_TS1 costs 0 real_cost = 82.8067 panther2_TS1-scwrl costs 0 real_cost = 1.27001 panther2_TS1 costs 0 real_cost = 11.7847 nFOLD_TS5-scwrl costs 0 real_cost = 172.992 nFOLD_TS5 costs 0 real_cost = 262.534 nFOLD_TS4-scwrl costs 0 real_cost = 17.6782 nFOLD_TS4 costs 0 real_cost = 119.707 nFOLD_TS3-scwrl costs 0 real_cost = 139.602 nFOLD_TS3 costs 0 real_cost = 234.658 nFOLD_TS2-scwrl costs 0 real_cost = 35.1947 nFOLD_TS2 costs 0 real_cost = 136.409 nFOLD_TS1-scwrl costs 0 real_cost = 156.092 nFOLD_TS1 costs 0 real_cost = 243.572 mGen-3D_TS1-scwrl costs 0 real_cost = 9.44042 mGen-3D_TS1 costs 0 real_cost = 96.4348 keasar-server_TS5-scwrl costs 0 real_cost = 10.3488 keasar-server_TS5 costs 0 real_cost = 13.0133 keasar-server_TS4-scwrl costs 0 real_cost = 18.0511 keasar-server_TS4 costs 0 real_cost = 20.0465 keasar-server_TS3-scwrl costs 0 real_cost = 28.9944 keasar-server_TS3 costs 0 real_cost = 37.1698 keasar-server_TS2-scwrl costs 0 real_cost = 24.8492 keasar-server_TS2 costs 0 real_cost = 23.4975 keasar-server_TS1-scwrl costs 0 real_cost = -5.91012 keasar-server_TS1 costs 0 real_cost = -2.48936 karypis.srv_TS4-scwrl costs 0 real_cost = 60.9577 karypis.srv_TS4 costs 0 real_cost = 60.9429 karypis.srv_TS3-scwrl costs 0 real_cost = 69.4197 karypis.srv_TS3 costs 0 real_cost = 69.4197 karypis.srv_TS2-scwrl costs 0 real_cost = 82.2478 karypis.srv_TS2 costs 0 real_cost = 77.0371 karypis.srv_TS1-scwrl costs 0 real_cost = 11.3607 karypis.srv_TS1 costs 0 real_cost = 11.6916 karypis.srv.4_TS5-scwrl costs 0 real_cost = 244.88 karypis.srv.4_TS5 costs 0 real_cost = 244.871 karypis.srv.4_TS4-scwrl costs 0 real_cost = 312.534 karypis.srv.4_TS4 costs 0 real_cost = 314.747 karypis.srv.4_TS3-scwrl costs 0 real_cost = 281.148 karypis.srv.4_TS3 costs 0 real_cost = 281.146 karypis.srv.4_TS2-scwrl costs 0 real_cost = 314.055 karypis.srv.4_TS2 costs 0 real_cost = 314.036 karypis.srv.4_TS1-scwrl costs 0 real_cost = 289.677 karypis.srv.4_TS1 costs 0 real_cost = 289.672 karypis.srv.2_TS5-scwrl costs 0 real_cost = 5.2312 karypis.srv.2_TS5 costs 0 real_cost = 5.2312 karypis.srv.2_TS4-scwrl costs 0 real_cost = 18.5863 karypis.srv.2_TS4 costs 0 real_cost = 18.5863 karypis.srv.2_TS3-scwrl costs 0 real_cost = 71.5094 karypis.srv.2_TS3 costs 0 real_cost = 71.5263 karypis.srv.2_TS2-scwrl costs 0 real_cost = 27.1354 karypis.srv.2_TS2 costs 0 real_cost = 27.1354 karypis.srv.2_TS1-scwrl costs 0 real_cost = 23.8387 karypis.srv.2_TS1 costs 0 real_cost = 23.8387 gtg_AL5-scwrl costs 0 real_cost = 137.111 gtg_AL5 costs 0 real_cost = 251.842 gtg_AL4-scwrl costs 0 real_cost = 69.5069 gtg_AL4 costs 0 real_cost = 202.325 gtg_AL3-scwrl costs 0 real_cost = 134.025 gtg_AL3 costs 0 real_cost = 241.977 gtg_AL2-scwrl costs 0 real_cost = 163.682 gtg_AL2 costs 0 real_cost = 266.55 gtg_AL1-scwrl costs 0 real_cost = 134.395 gtg_AL1 costs 0 real_cost = 246.407 forecast-s_AL5-scwrl costs 0 real_cost = 309.992 forecast-s_AL5 costs 0 real_cost = 426.038 forecast-s_AL4-scwrl costs 0 real_cost = 92.4173 forecast-s_AL4 costs 0 real_cost = 189.633 forecast-s_AL3-scwrl costs 0 real_cost = 160.15 forecast-s_AL3 costs 0 real_cost = 270.957 forecast-s_AL2-scwrl costs 0 real_cost = 158.811 forecast-s_AL2 costs 0 real_cost = 283.43 forecast-s_AL1-scwrl costs 0 real_cost = 150.857 forecast-s_AL1 costs 0 real_cost = 273.596 beautshotbase_TS1-scwrl costs 0 real_cost = -6.8942 beautshotbase_TS1 costs 0 real_cost = -7.88775 beautshot_TS1-scwrl costs 0 real_cost = 47.6569 beautshot_TS1 costs 0 real_cost = 49.2481 Zhang-Server_TS5-scwrl costs 0 real_cost = -29.1586 Zhang-Server_TS5 costs 0 real_cost = -28.4167 Zhang-Server_TS4-scwrl costs 0 real_cost = -77.6069 Zhang-Server_TS4 costs 0 real_cost = -69.9483 Zhang-Server_TS3-scwrl costs 0 real_cost = -80.2517 Zhang-Server_TS3 costs 0 real_cost = -70.461 Zhang-Server_TS2-scwrl costs 0 real_cost = -31.9344 Zhang-Server_TS2 costs 0 real_cost = -32.4428 Zhang-Server_TS1-scwrl costs 0 real_cost = -56.3782 Zhang-Server_TS1 costs 0 real_cost = -51.5856 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 135.621 UNI-EID_sfst_AL5 costs 0 real_cost = 238.13 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 168.772 UNI-EID_sfst_AL4 costs 0 real_cost = 258.756 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 11.6342 UNI-EID_sfst_AL3 costs 0 real_cost = 147.371 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 18.1557 UNI-EID_sfst_AL2 costs 0 real_cost = 135.924 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 26.1396 UNI-EID_sfst_AL1 costs 0 real_cost = 160.814 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -18.7647 UNI-EID_expm_TS1 costs 0 real_cost = 105.364 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 93.7001 UNI-EID_bnmx_TS5 costs 0 real_cost = 215.973 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 151.037 UNI-EID_bnmx_TS4 costs 0 real_cost = 272.478 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 11.6342 UNI-EID_bnmx_TS3 costs 0 real_cost = 147.371 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 8.38046 UNI-EID_bnmx_TS2 costs 0 real_cost = 136.376 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 26.1396 UNI-EID_bnmx_TS1 costs 0 real_cost = 160.814 SPARKS2_TS5-scwrl costs 0 real_cost = 75.2469 SPARKS2_TS5 costs 0 real_cost = 81.1692 SPARKS2_TS4-scwrl costs 0 real_cost = 84.0642 SPARKS2_TS4 costs 0 real_cost = 78.187 SPARKS2_TS3-scwrl costs 0 real_cost = -19.9947 SPARKS2_TS3 costs 0 real_cost = -17.7279 SPARKS2_TS2-scwrl costs 0 real_cost = -11.4594 SPARKS2_TS2 costs 0 real_cost = -13.5648 SPARKS2_TS1-scwrl costs 0 real_cost = 27.9976 SPARKS2_TS1 costs 0 real_cost = 36.7389 SP4_TS5-scwrl costs 0 real_cost = 69.5741 SP4_TS5 costs 0 real_cost = 74.5666 SP4_TS4-scwrl costs 0 real_cost = 80.4586 SP4_TS4 costs 0 real_cost = 85.0612 SP4_TS3-scwrl costs 0 real_cost = -19.5871 SP4_TS3 costs 0 real_cost = -15.0755 SP4_TS2-scwrl costs 0 real_cost = 20.6991 SP4_TS2 costs 0 real_cost = 23.8634 SP4_TS1-scwrl costs 0 real_cost = -13.7951 SP4_TS1 costs 0 real_cost = -7.50128 SP3_TS5-scwrl costs 0 real_cost = 104.448 SP3_TS5 costs 0 real_cost = 106.282 SP3_TS4-scwrl costs 0 real_cost = 76.5528 SP3_TS4 costs 0 real_cost = 81.3735 SP3_TS3-scwrl costs 0 real_cost = -19.706 SP3_TS3 costs 0 real_cost = -17.5449 SP3_TS2-scwrl costs 0 real_cost = 20.6991 SP3_TS2 costs 0 real_cost = 23.8634 SP3_TS1-scwrl costs 0 real_cost = -13.7951 SP3_TS1 costs 0 real_cost = -7.50128 SAM_T06_server_TS5-scwrl costs 0 real_cost = 172.769 SAM_T06_server_TS5 costs 0 real_cost = 140.967 SAM_T06_server_TS4-scwrl costs 0 real_cost = 2.18194 SAM_T06_server_TS4 costs 0 real_cost = -11.5195 SAM_T06_server_TS3-scwrl costs 0 real_cost = 45.7173 SAM_T06_server_TS3 costs 0 real_cost = 33.4625 SAM_T06_server_TS2-scwrl costs 0 real_cost = 105.402 SAM_T06_server_TS2 costs 0 real_cost = 85.5527 SAM_T06_server_TS1-scwrl costs 0 real_cost = 60.9693 SAM_T06_server_TS1 costs 0 real_cost = 61.3532 SAM-T99_AL5-scwrl costs 0 real_cost = 4.51311 SAM-T99_AL5 costs 0 real_cost = 132.658 SAM-T99_AL4-scwrl costs 0 real_cost = 21.2135 SAM-T99_AL4 costs 0 real_cost = 147.416 SAM-T99_AL3-scwrl costs 0 real_cost = 43.0382 SAM-T99_AL3 costs 0 real_cost = 178.707 SAM-T99_AL2-scwrl costs 0 real_cost = 83.3672 SAM-T99_AL2 costs 0 real_cost = 199.748 SAM-T99_AL1-scwrl costs 0 real_cost = 91.364 SAM-T99_AL1 costs 0 real_cost = 201.04 SAM-T02_AL5-scwrl costs 0 real_cost = 14.3938 SAM-T02_AL5 costs 0 real_cost = 136.475 SAM-T02_AL4-scwrl costs 0 real_cost = 6.03857 SAM-T02_AL4 costs 0 real_cost = 129.571 SAM-T02_AL3-scwrl costs 0 real_cost = 13.3245 SAM-T02_AL3 costs 0 real_cost = 139.89 SAM-T02_AL2-scwrl costs 0 real_cost = 19.1548 SAM-T02_AL2 costs 0 real_cost = 138.987 SAM-T02_AL1-scwrl costs 0 real_cost = 14.1299 SAM-T02_AL1 costs 0 real_cost = 138.719 ROKKY_TS4-scwrl costs 0 real_cost = 4.29673 ROKKY_TS4 costs 0 real_cost = 6.85526 ROKKY_TS3-scwrl costs 0 real_cost = 110.98 ROKKY_TS3 costs 0 real_cost = 114.388 ROKKY_TS2-scwrl costs 0 real_cost = 110.761 ROKKY_TS2 costs 0 real_cost = 110.99 ROKKY_TS1-scwrl costs 0 real_cost = 67.6405 ROKKY_TS1 costs 0 real_cost = 69.8407 ROBETTA_TS5-scwrl costs 0 real_cost = 62.4604 ROBETTA_TS5 costs 0 real_cost = 60.9206 ROBETTA_TS4-scwrl costs 0 real_cost = 60.0325 ROBETTA_TS4 costs 0 real_cost = 58.4054 ROBETTA_TS3-scwrl costs 0 real_cost = 66.2418 ROBETTA_TS3 costs 0 real_cost = 67.9739 ROBETTA_TS2-scwrl costs 0 real_cost = 58.7013 ROBETTA_TS2 costs 0 real_cost = 57.9243 ROBETTA_TS1-scwrl costs 0 real_cost = 76.5701 ROBETTA_TS1 costs 0 real_cost = 78.9654 RAPTOR_TS5-scwrl costs 0 real_cost = 85.7657 RAPTOR_TS5 costs 0 real_cost = 95.4464 RAPTOR_TS4-scwrl costs 0 real_cost = -18.8368 RAPTOR_TS4 costs 0 real_cost = -12.7967 RAPTOR_TS3-scwrl costs 0 real_cost = 86.027 RAPTOR_TS3 costs 0 real_cost = 88.4985 RAPTOR_TS2-scwrl costs 0 real_cost = 60.6441 RAPTOR_TS2 costs 0 real_cost = 57.4799 RAPTOR_TS1-scwrl costs 0 real_cost = -11.6251 RAPTOR_TS1 costs 0 real_cost = -7.22872 RAPTORESS_TS5-scwrl costs 0 real_cost = 105.597 RAPTORESS_TS5 costs 0 real_cost = 105.147 RAPTORESS_TS4-scwrl costs 0 real_cost = -11.0646 RAPTORESS_TS4 costs 0 real_cost = -4.43164 RAPTORESS_TS3-scwrl costs 0 real_cost = 112.312 RAPTORESS_TS3 costs 0 real_cost = 115.007 RAPTORESS_TS2-scwrl costs 0 real_cost = 88.3009 RAPTORESS_TS2 costs 0 real_cost = 88.2043 RAPTORESS_TS1-scwrl costs 0 real_cost = 7.97684 RAPTORESS_TS1 costs 0 real_cost = 13.5682 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -5.92554 RAPTOR-ACE_TS5 costs 0 real_cost = 1.9882 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -19.706 RAPTOR-ACE_TS4 costs 0 real_cost = -17.5449 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -18.5167 RAPTOR-ACE_TS3 costs 0 real_cost = -14.847 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -4.12721 RAPTOR-ACE_TS2 costs 0 real_cost = -3.95996 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -11.8625 RAPTOR-ACE_TS1 costs 0 real_cost = -1.80929 Pmodeller6_TS5-scwrl costs 0 real_cost = 58.1877 Pmodeller6_TS5 costs 0 real_cost = 57.8567 Pmodeller6_TS4-scwrl costs 0 real_cost = 58.1877 Pmodeller6_TS4 costs 0 real_cost = 57.8567 Pmodeller6_TS3-scwrl costs 0 real_cost = 45.1437 Pmodeller6_TS3 costs 0 real_cost = 44.6797 Pmodeller6_TS2-scwrl costs 0 real_cost = -30.986 Pmodeller6_TS2 costs 0 real_cost = -34.8462 Pmodeller6_TS1-scwrl costs 0 real_cost = -30.986 Pmodeller6_TS1 costs 0 real_cost = -34.8462 Phyre-2_TS5-scwrl costs 0 real_cost = 103.384 Phyre-2_TS5 costs 0 real_cost = 95.6754 Phyre-2_TS4-scwrl costs 0 real_cost = 91.796 Phyre-2_TS4 costs 0 real_cost = 85.746 Phyre-2_TS3-scwrl costs 0 real_cost = 91.796 Phyre-2_TS3 costs 0 real_cost = 85.746 Phyre-2_TS2-scwrl costs 0 real_cost = 99.5822 Phyre-2_TS2 costs 0 real_cost = 97.8698 Phyre-2_TS1-scwrl costs 0 real_cost = 89.5383 Phyre-2_TS1 costs 0 real_cost = 88.2207 Phyre-1_TS1-scwrl costs 0 real_cost = 10.5389 Phyre-1_TS1 costs 0 real_cost = 9.40138 Pcons6_TS5-scwrl costs 0 real_cost = -34.645 Pcons6_TS5 costs 0 real_cost = -38.0847 Pcons6_TS4-scwrl costs 0 real_cost = -70.4645 Pcons6_TS4 costs 0 real_cost = -69.257 Pcons6_TS3-scwrl costs 0 real_cost = 6.20212 Pcons6_TS3 costs 0 real_cost = 4.39919 Pcons6_TS2-scwrl costs 0 real_cost = -30.986 Pcons6_TS2 costs 0 real_cost = -34.8462 Pcons6_TS1-scwrl costs 0 real_cost = -58.2976 Pcons6_TS1 costs 0 real_cost = -59.177 PROTINFO_TS5-scwrl costs 0 real_cost = -10.0482 PROTINFO_TS5 costs 0 real_cost = -11.5865 PROTINFO_TS4-scwrl costs 0 real_cost = 4.58696 PROTINFO_TS4 costs 0 real_cost = 1.96467 PROTINFO_TS3-scwrl costs 0 real_cost = -18.1597 PROTINFO_TS3 costs 0 real_cost = -11.1645 PROTINFO_TS2-scwrl costs 0 real_cost = -0.457873 PROTINFO_TS2 costs 0 real_cost = -1.51597 PROTINFO_TS1-scwrl costs 0 real_cost = -22.1842 PROTINFO_TS1 costs 0 real_cost = -18.8067 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 4.71107 PROTINFO-AB_TS5 costs 0 real_cost = 6.35634 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -5.83439 PROTINFO-AB_TS4 costs 0 real_cost = 3.44697 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -15.3311 PROTINFO-AB_TS3 costs 0 real_cost = -14.4569 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -7.5288 PROTINFO-AB_TS2 costs 0 real_cost = 1.80514 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -15.9839 PROTINFO-AB_TS1 costs 0 real_cost = -7.72587 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 52.5462 NN_PUT_lab_TS1 costs 0 real_cost = 56.619 MetaTasser_TS5-scwrl costs 0 real_cost = -52.0678 MetaTasser_TS5 costs 0 real_cost = -57.4896 MetaTasser_TS4-scwrl costs 0 real_cost = -14.0554 MetaTasser_TS4 costs 0 real_cost = -11.4115 MetaTasser_TS3-scwrl costs 0 real_cost = -27.914 MetaTasser_TS3 costs 0 real_cost = -28.24 MetaTasser_TS2-scwrl costs 0 real_cost = -5.77234 MetaTasser_TS2 costs 0 real_cost = -11.1346 MetaTasser_TS1-scwrl costs 0 real_cost = -101.325 MetaTasser_TS1 costs 0 real_cost = -101.711 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 252.117 Ma-OPUS-server_TS5 costs 0 real_cost = 251.477 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 116.175 Ma-OPUS-server_TS4 costs 0 real_cost = 121.875 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -6.55932 Ma-OPUS-server_TS3 costs 0 real_cost = 1.90241 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 230.435 Ma-OPUS-server_TS2 costs 0 real_cost = 226.39 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -18.4062 Ma-OPUS-server_TS1 costs 0 real_cost = -17.4593 Ma-OPUS-server2_TS5-scwrl costs 0 real_cost = 82.7843 Ma-OPUS-server2_TS5 costs 0 real_cost = 89.1663 Ma-OPUS-server2_TS4-scwrl costs 0 real_cost = 252.117 Ma-OPUS-server2_TS4 costs 0 real_cost = 251.477 Ma-OPUS-server2_TS3-scwrl costs 0 real_cost = -11.6643 Ma-OPUS-server2_TS3 costs 0 real_cost = -2.9522 Ma-OPUS-server2_TS2-scwrl costs 0 real_cost = -21.6546 Ma-OPUS-server2_TS2 costs 0 real_cost = -21.7754 Ma-OPUS-server2_TS1-scwrl costs 0 real_cost = 235.326 Ma-OPUS-server2_TS1 costs 0 real_cost = 235.151 MIG_FROST_AL1-scwrl costs 0 real_cost = 115.494 MIG_FROST_AL1 costs 0 real_cost = 257.247 LOOPP_TS5-scwrl costs 0 real_cost = -7.93049 LOOPP_TS5 costs 0 real_cost = -7.60847 LOOPP_TS4-scwrl costs 0 real_cost = 30.0998 LOOPP_TS4 costs 0 real_cost = 26.5191 LOOPP_TS3-scwrl costs 0 real_cost = 52.6099 LOOPP_TS3 costs 0 real_cost = 54.603 LOOPP_TS2-scwrl costs 0 real_cost = 40.4943 LOOPP_TS2 costs 0 real_cost = 43.3061 LOOPP_TS1-scwrl costs 0 real_cost = 52.5462 LOOPP_TS1 costs 0 real_cost = 56.619 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 496.969 Huber-Torda-Server_TS5 costs 0 real_cost = 527.526 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 479.904 Huber-Torda-Server_TS4 costs 0 real_cost = 506.922 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 376.954 Huber-Torda-Server_TS3 costs 0 real_cost = 446.311 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 465.921 Huber-Torda-Server_TS2 costs 0 real_cost = 507.968 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 35.7728 Huber-Torda-Server_TS1 costs 0 real_cost = 125.67 HHpred3_TS1-scwrl costs 0 real_cost = -19.3494 HHpred3_TS1 costs 0 real_cost = -7.33559 HHpred2_TS1-scwrl costs 0 real_cost = -19.3494 HHpred2_TS1 costs 0 real_cost = -7.33559 HHpred1_TS1-scwrl costs 0 real_cost = -17.2332 HHpred1_TS1 costs 0 real_cost = -12.5744 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 15.5122 GeneSilicoMetaServer_TS5 costs 0 real_cost = 18.4108 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = 7.89195 GeneSilicoMetaServer_TS4 costs 0 real_cost = 11.1817 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -11.592 GeneSilicoMetaServer_TS3 costs 0 real_cost = -7.201 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 15.4648 GeneSilicoMetaServer_TS2 costs 0 real_cost = 19.647 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -15.7742 GeneSilicoMetaServer_TS1 costs 0 real_cost = -12.1846 FUNCTION_TS5-scwrl costs 0 real_cost = 8.39124 FUNCTION_TS5 costs 0 real_cost = 11.4138 FUNCTION_TS4-scwrl costs 0 real_cost = 1.1025 FUNCTION_TS4 costs 0 real_cost = -0.921663 FUNCTION_TS3-scwrl costs 0 real_cost = 52.4038 FUNCTION_TS3 costs 0 real_cost = 49.0252 FUNCTION_TS2-scwrl costs 0 real_cost = 71.1869 FUNCTION_TS2 costs 0 real_cost = 74.8959 FUNCTION_TS1-scwrl costs 0 real_cost = 12.4501 FUNCTION_TS1 costs 0 real_cost = 8.54691 FUGUE_AL5-scwrl costs 0 real_cost = 197.684 FUGUE_AL5 costs 0 real_cost = 319.311 FUGUE_AL4-scwrl costs 0 real_cost = 254.479 FUGUE_AL4 costs 0 real_cost = 346.575 FUGUE_AL3-scwrl costs 0 real_cost = 150.498 FUGUE_AL3 costs 0 real_cost = 287.272 FUGUE_AL2-scwrl costs 0 real_cost = 25.7732 FUGUE_AL2 costs 0 real_cost = 159.248 FUGUE_AL1-scwrl costs 0 real_cost = 26.9308 FUGUE_AL1 costs 0 real_cost = 153.515 FUGMOD_TS5-scwrl costs 0 real_cost = 129.243 FUGMOD_TS5 costs 0 real_cost = 132.567 FUGMOD_TS4-scwrl costs 0 real_cost = 228.384 FUGMOD_TS4 costs 0 real_cost = 229.595 FUGMOD_TS3-scwrl costs 0 real_cost = 118.823 FUGMOD_TS3 costs 0 real_cost = 115.806 FUGMOD_TS2-scwrl costs 0 real_cost = 14.2765 FUGMOD_TS2 costs 0 real_cost = 16.1427 FUGMOD_TS1-scwrl costs 0 real_cost = 13.1251 FUGMOD_TS1 costs 0 real_cost = 18.2218 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 287.246 FPSOLVER-SERVER_TS5 costs 0 real_cost = 291.542 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 256.666 FPSOLVER-SERVER_TS4 costs 0 real_cost = 263.791 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 310.538 FPSOLVER-SERVER_TS3 costs 0 real_cost = 310.247 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 293.686 FPSOLVER-SERVER_TS2 costs 0 real_cost = 295.783 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 284.006 FPSOLVER-SERVER_TS1 costs 0 real_cost = 284.037 FORTE2_AL5-scwrl costs 0 real_cost = 104.408 FORTE2_AL5 costs 0 real_cost = 227.824 FORTE2_AL4-scwrl costs 0 real_cost = 102.164 FORTE2_AL4 costs 0 real_cost = 245.676 FORTE2_AL3-scwrl costs 0 real_cost = 146.02 FORTE2_AL3 costs 0 real_cost = 282.633 FORTE2_AL2-scwrl costs 0 real_cost = 143.689 FORTE2_AL2 costs 0 real_cost = 277.535 FORTE2_AL1-scwrl costs 0 real_cost = 62.2503 FORTE2_AL1 costs 0 real_cost = 207.244 FORTE1_AL5-scwrl costs 0 real_cost = 102.164 FORTE1_AL5 costs 0 real_cost = 245.676 FORTE1_AL4-scwrl costs 0 real_cost = 76.5591 FORTE1_AL4 costs 0 real_cost = 200.833 FORTE1_AL3-scwrl costs 0 real_cost = 146.02 FORTE1_AL3 costs 0 real_cost = 282.633 FORTE1_AL2-scwrl costs 0 real_cost = 142.427 FORTE1_AL2 costs 0 real_cost = 276.421 FORTE1_AL1-scwrl costs 0 real_cost = 62.2503 FORTE1_AL1 costs 0 real_cost = 207.244 FOLDpro_TS5-scwrl costs 0 real_cost = 224.421 FOLDpro_TS5 costs 0 real_cost = 226.351 FOLDpro_TS4-scwrl costs 0 real_cost = 110.085 FOLDpro_TS4 costs 0 real_cost = 107.557 FOLDpro_TS3-scwrl costs 0 real_cost = 119.643 FOLDpro_TS3 costs 0 real_cost = 128.035 FOLDpro_TS2-scwrl costs 0 real_cost = -30.9445 FOLDpro_TS2 costs 0 real_cost = -26.9905 FOLDpro_TS1-scwrl costs 0 real_cost = -53.6426 FOLDpro_TS1 costs 0 real_cost = -48.7609 FAMS_TS5-scwrl costs 0 real_cost = -34.4747 FAMS_TS5 costs 0 real_cost = -28.5814 FAMS_TS4-scwrl costs 0 real_cost = -16.0664 FAMS_TS4 costs 0 real_cost = -13.8678 FAMS_TS3-scwrl costs 0 real_cost = -20.8724 FAMS_TS3 costs 0 real_cost = -15.2104 FAMS_TS2-scwrl costs 0 real_cost = -12.4774 FAMS_TS2 costs 0 real_cost = -12.5623 FAMS_TS1-scwrl costs 0 real_cost = -7.28869 FAMS_TS1 costs 0 real_cost = -3.41072 FAMSD_TS5-scwrl costs 0 real_cost = -0.693048 FAMSD_TS5 costs 0 real_cost = 0.840198 FAMSD_TS4-scwrl costs 0 real_cost = 69.8222 FAMSD_TS4 costs 0 real_cost = 77.8989 FAMSD_TS3-scwrl costs 0 real_cost = 15.1253 FAMSD_TS3 costs 0 real_cost = 18.1507 FAMSD_TS2-scwrl costs 0 real_cost = -22.6239 FAMSD_TS2 costs 0 real_cost = -25.1996 FAMSD_TS1-scwrl costs 0 real_cost = -48.9294 FAMSD_TS1 costs 0 real_cost = -43.6844 Distill_TS5-scwrl costs 0 real_cost = 514.579 Distill_TS4-scwrl costs 0 real_cost = 511.274 Distill_TS3-scwrl costs 0 real_cost = 503.517 Distill_TS2-scwrl costs 0 real_cost = 497.14 Distill_TS1-scwrl costs 0 real_cost = 499.967 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -18.5107 CaspIta-FOX_TS5 costs 0 real_cost = -17.718 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 67.5761 CaspIta-FOX_TS4 costs 0 real_cost = 61.2962 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 124.419 CaspIta-FOX_TS3 costs 0 real_cost = 118.229 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 75.9503 CaspIta-FOX_TS2 costs 0 real_cost = 75.0449 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 141.923 CaspIta-FOX_TS1 costs 0 real_cost = 133.41 CPHmodels_TS1-scwrl costs 0 real_cost = 36.1524 CPHmodels_TS1 costs 0 real_cost = 42.5489 CIRCLE_TS5-scwrl costs 0 real_cost = -0.164026 CIRCLE_TS5 costs 0 real_cost = 2.83853 CIRCLE_TS4-scwrl costs 0 real_cost = -14.1247 CIRCLE_TS4 costs 0 real_cost = -7.44476 CIRCLE_TS3-scwrl costs 0 real_cost = -20.8724 CIRCLE_TS3 costs 0 real_cost = -15.2104 CIRCLE_TS2-scwrl costs 0 real_cost = -16.0664 CIRCLE_TS2 costs 0 real_cost = -13.8678 CIRCLE_TS1-scwrl costs 0 real_cost = -12.4774 CIRCLE_TS1 costs 0 real_cost = -12.5623 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -29.8992 Bilab-ENABLE_TS5 costs 0 real_cost = -29.9003 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -23.5433 Bilab-ENABLE_TS4 costs 0 real_cost = -22.8582 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -24.3858 Bilab-ENABLE_TS3 costs 0 real_cost = -24.3867 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -22.9559 Bilab-ENABLE_TS2 costs 0 real_cost = -22.9573 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -22.7939 Bilab-ENABLE_TS1 costs 0 real_cost = -22.7939 BayesHH_TS1-scwrl costs 0 real_cost = -37.4515 BayesHH_TS1 costs 0 real_cost = -32.0116 ABIpro_TS5-scwrl costs 0 real_cost = 193.778 ABIpro_TS5 costs 0 real_cost = 195.69 ABIpro_TS4-scwrl costs 0 real_cost = 224.367 ABIpro_TS4 costs 0 real_cost = 224.261 ABIpro_TS3-scwrl costs 0 real_cost = 201.652 ABIpro_TS3 costs 0 real_cost = 198.73 ABIpro_TS2-scwrl costs 0 real_cost = 227.967 ABIpro_TS2 costs 0 real_cost = 228.091 ABIpro_TS1-scwrl costs 0 real_cost = 197.66 ABIpro_TS1 costs 0 real_cost = 198.122 3Dpro_TS5-scwrl costs 0 real_cost = 64.0065 3Dpro_TS5 costs 0 real_cost = 59.9244 3Dpro_TS4-scwrl costs 0 real_cost = 114.759 3Dpro_TS4 costs 0 real_cost = 117.786 3Dpro_TS3-scwrl costs 0 real_cost = 23.3768 3Dpro_TS3 costs 0 real_cost = 16.7082 3Dpro_TS2-scwrl costs 0 real_cost = -54.787 3Dpro_TS2 costs 0 real_cost = -47.5439 3Dpro_TS1-scwrl costs 0 real_cost = -49.7002 3Dpro_TS1 costs 0 real_cost = -41.7428 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 30.6649 3D-JIGSAW_TS5 costs 0 real_cost = 34.4323 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 28.3821 3D-JIGSAW_TS4 costs 0 real_cost = 33.2739 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 22.4568 3D-JIGSAW_TS3 costs 0 real_cost = 28.9244 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 27.1307 3D-JIGSAW_TS2 costs 0 real_cost = 31.16 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 24.6955 3D-JIGSAW_TS1 costs 0 real_cost = 35.1987 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 72.2831 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 75.2287 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 55.4581 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 55.193 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 24.6199 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 21.8741 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 48.3529 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 51.1722 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 51.0502 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 49.1658 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 51.1152 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 50.8558 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 19.0279 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 18.6101 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 48.2317 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 45.9791 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 31.5161 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 30.7494 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 19.189 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 19.6448 T0323.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 91.4546 T0323.try4-opt2.pdb.gz costs 0 real_cost = 92.1443 T0323.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 98.4272 T0323.try4-opt1.pdb.gz costs 0 real_cost = 93.4985 T0323.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 91.3626 T0323.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 98.6437 T0323.try3-opt2.pdb.gz costs 0 real_cost = 100.065 T0323.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 100.386 T0323.try3-opt1.pdb.gz costs 0 real_cost = 100.621 T0323.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 98.309 T0323.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 93.6871 T0323.try2-opt2.pdb.gz costs 0 real_cost = 95.0569 T0323.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 97.4509 T0323.try2-opt1.pdb.gz costs 0 real_cost = 96.2072 T0323.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 95.3544 T0323.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 97.1516 T0323.try1-opt2.pdb.gz costs 0 real_cost = 96.7049 T0323.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 99.3507 T0323.try1-opt1.pdb.gz costs 0 real_cost = 99.932 T0323.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 99.4397 ../model5.ts-submitted costs 0 real_cost = 150.92 ../model4.ts-submitted costs 0 real_cost = 79.3784 ../model3.ts-submitted costs 0 real_cost = 100.274 ../model2.ts-submitted costs 0 real_cost = 96.612 ../model1.ts-submitted costs 0 real_cost = 95.0506 align5 costs 0 real_cost = 143.283 align4 costs 0 real_cost = 166.75 align3 costs 0 real_cost = 0.447656 align2 costs 0 real_cost = 145.593 align1 costs 0 real_cost = 78.7266 T0323.try1-opt2.pdb costs 0 real_cost = 96.7094 model5-scwrl costs 0 real_cost = 182.784 model5.ts-submitted costs 0 real_cost = 150.92 model4-scwrl costs 0 real_cost = 104.412 model4.ts-submitted costs 0 real_cost = 79.3784 model3-scwrl costs 0 real_cost = 97.6314 model3.ts-submitted costs 0 real_cost = 100.274 model2-scwrl costs 0 real_cost = 98.6126 model2.ts-submitted costs 0 real_cost = 96.612 model1-scwrl costs 0 real_cost = 92.7349 model1.ts-submitted costs 0 real_cost = 95.0505 2h56A costs 0 real_cost = -876.2 # command:CPU_time= 1014.76 sec, elapsed time= 1496.63 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0323/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h56A/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1174763178 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.00509 sec, elapsed time= 6.12735 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.08707 sec, elapsed time= 6.23337 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0323 numbered 1 through 221 Created new target T0323 from T0323.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0323_1.real.pdb looking for model 1 Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.50871 sec, elapsed time= 8.67598 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 173 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -44.802 # GDT_score(maxd=8,maxw=2.9)= -45.2217 # GDT_score(maxd=8,maxw=3.2)= -42.3189 # GDT_score(maxd=8,maxw=3.5)= -39.7342 # GDT_score(maxd=10,maxw=3.8)= -43.1809 # GDT_score(maxd=10,maxw=4)= -41.5664 # GDT_score(maxd=10,maxw=4.2)= -40.1057 # GDT_score(maxd=12,maxw=4.3)= -43.834 # GDT_score(maxd=12,maxw=4.5)= -42.3698 # GDT_score(maxd=12,maxw=4.7)= -41.0294 # GDT_score(maxd=14,maxw=5.2)= -41.3121 # GDT_score(maxd=14,maxw=5.5)= -39.5397 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.1810000e+03 rmsd (weighted)= 1.1193754e+01 (unweighted)= 3.8163296e+01 superimposing iter= 1 total_weight= 2.1090169e+03 rmsd (weighted)= 5.9920243e+00 (unweighted)= 3.7410054e+01 superimposing iter= 2 total_weight= 1.3295941e+03 rmsd (weighted)= 4.2204475e+00 (unweighted)= 3.6992072e+01 superimposing iter= 3 total_weight= 1.2024385e+03 rmsd (weighted)= 3.2406166e+00 (unweighted)= 3.6832358e+01 superimposing iter= 4 total_weight= 1.0049391e+03 rmsd (weighted)= 2.7950947e+00 (unweighted)= 3.6654020e+01 superimposing iter= 5 total_weight= 8.7954957e+02 rmsd (weighted)= 2.6012606e+00 (unweighted)= 3.6517881e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1597794140.pdb -s /var/tmp/to_scwrl_1597794140.seq -o /var/tmp/from_scwrl_1597794140.pdb > /var/tmp/scwrl_1597794140.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1597794140.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -44.0594 # GDT_score(maxd=8,maxw=2.9)= -44.8514 # GDT_score(maxd=8,maxw=3.2)= -41.9487 # GDT_score(maxd=8,maxw=3.5)= -39.4074 # GDT_score(maxd=10,maxw=3.8)= -42.8898 # GDT_score(maxd=10,maxw=4)= -41.3387 # GDT_score(maxd=10,maxw=4.2)= -39.8888 # GDT_score(maxd=12,maxw=4.3)= -43.6061 # GDT_score(maxd=12,maxw=4.5)= -42.1521 # GDT_score(maxd=12,maxw=4.7)= -40.8218 # GDT_score(maxd=14,maxw=5.2)= -41.1732 # GDT_score(maxd=14,maxw=5.5)= -39.4675 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1588426776.pdb -s /var/tmp/to_scwrl_1588426776.seq -o /var/tmp/from_scwrl_1588426776.pdb > /var/tmp/scwrl_1588426776.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1588426776.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -40.8416 # GDT_score(maxd=8,maxw=2.9)= -41.3219 # GDT_score(maxd=8,maxw=3.2)= -38.6711 # GDT_score(maxd=8,maxw=3.5)= -36.4022 # GDT_score(maxd=10,maxw=3.8)= -40.0459 # GDT_score(maxd=10,maxw=4)= -38.6377 # GDT_score(maxd=10,maxw=4.2)= -37.3636 # GDT_score(maxd=12,maxw=4.3)= -40.9997 # GDT_score(maxd=12,maxw=4.5)= -39.7055 # GDT_score(maxd=12,maxw=4.7)= -38.5215 # GDT_score(maxd=14,maxw=5.2)= -39.0651 # GDT_score(maxd=14,maxw=5.5)= -37.5076 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_345565760.pdb -s /var/tmp/to_scwrl_345565760.seq -o /var/tmp/from_scwrl_345565760.pdb > /var/tmp/scwrl_345565760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345565760.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.851485 # GDT_score = -41.3366 # GDT_score(maxd=8,maxw=2.9)= -40.4773 # GDT_score(maxd=8,maxw=3.2)= -38.1358 # GDT_score(maxd=8,maxw=3.5)= -35.9935 # GDT_score(maxd=10,maxw=3.8)= -39.7705 # GDT_score(maxd=10,maxw=4)= -38.386 # GDT_score(maxd=10,maxw=4.2)= -37.0767 # GDT_score(maxd=12,maxw=4.3)= -40.9456 # GDT_score(maxd=12,maxw=4.5)= -39.6066 # GDT_score(maxd=12,maxw=4.7)= -38.3134 # GDT_score(maxd=14,maxw=5.2)= -38.6514 # GDT_score(maxd=14,maxw=5.5)= -36.9212 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_756580271.pdb -s /var/tmp/to_scwrl_756580271.seq -o /var/tmp/from_scwrl_756580271.pdb > /var/tmp/scwrl_756580271.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_756580271.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.80198 # GDT_score = -30.4455 # GDT_score(maxd=8,maxw=2.9)= -26.2345 # GDT_score(maxd=8,maxw=3.2)= -25.0745 # GDT_score(maxd=8,maxw=3.5)= -24.078 # GDT_score(maxd=10,maxw=3.8)= -28.1089 # GDT_score(maxd=10,maxw=4)= -27.3281 # GDT_score(maxd=10,maxw=4.2)= -26.5925 # GDT_score(maxd=12,maxw=4.3)= -30.3235 # GDT_score(maxd=12,maxw=4.5)= -29.5039 # GDT_score(maxd=12,maxw=4.7)= -28.7086 # GDT_score(maxd=14,maxw=5.2)= -29.8502 # GDT_score(maxd=14,maxw=5.5)= -28.6437 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_874668627.pdb -s /var/tmp/to_scwrl_874668627.seq -o /var/tmp/from_scwrl_874668627.pdb > /var/tmp/scwrl_874668627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_874668627.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0323.try1-opt2.pdb looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -43.8119 # GDT_score(maxd=8,maxw=2.9)= -44.7127 # GDT_score(maxd=8,maxw=3.2)= -41.7923 # GDT_score(maxd=8,maxw=3.5)= -39.2565 # GDT_score(maxd=10,maxw=3.8)= -42.7035 # GDT_score(maxd=10,maxw=4)= -41.1618 # GDT_score(maxd=10,maxw=4.2)= -39.7203 # GDT_score(maxd=12,maxw=4.3)= -43.3977 # GDT_score(maxd=12,maxw=4.5)= -41.953 # GDT_score(maxd=12,maxw=4.7)= -40.6312 # GDT_score(maxd=14,maxw=5.2)= -40.9917 # GDT_score(maxd=14,maxw=5.5)= -39.2958 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.1810000e+03 rmsd (weighted)= 1.1257241e+01 (unweighted)= 3.8057538e+01 superimposing iter= 1 total_weight= 2.1013995e+03 rmsd (weighted)= 6.0518499e+00 (unweighted)= 3.7390893e+01 superimposing iter= 2 total_weight= 1.2931147e+03 rmsd (weighted)= 4.3011410e+00 (unweighted)= 3.6988155e+01 superimposing iter= 3 total_weight= 1.2511211e+03 rmsd (weighted)= 3.2234638e+00 (unweighted)= 3.6816489e+01 superimposing iter= 4 total_weight= 1.0527892e+03 rmsd (weighted)= 2.7154215e+00 (unweighted)= 3.6625130e+01 superimposing iter= 5 total_weight= 9.0763110e+02 rmsd (weighted)= 2.4798099e+00 (unweighted)= 3.6498634e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0323)V68.C and (T0323)L72.C only 0.0000000e+00 apart, marking (T0323)L72.C as missing WARNING: atoms too close: (T0323)G69.N and (T0323)E73.N only 0.0000000e+00 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)G69.CA and (T0323)E73.CA only 0.0000000e+00 apart, marking (T0323)G69.CA as missing WARNING: atoms too close: (T0323)S108.C and (T0323)F113.C only 0.0000000e+00 apart, marking (T0323)F113.C as missing WARNING: atoms too close: (T0323)G109.N and (T0323)T114.N only 0.0000000e+00 apart, marking (T0323)G109.N as missing WARNING: atoms too close: (T0323)G109.CA and (T0323)T114.CA only 0.0000000e+00 apart, marking (T0323)G109.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)L150.C and (T0323)D151.C only 0.0000000e+00 apart, marking (T0323)D151.C as missing WARNING: atoms too close: (T0323)D151.N and (T0323)V152.N only 0.0000000e+00 apart, marking (T0323)D151.N as missing WARNING: atoms too close: (T0323)D151.CA and (T0323)V152.CA only 0.0000000e+00 apart, marking (T0323)D151.CA as missing WARNING: atoms too close: (T0323)V155.C and (T0323)G156.C only 0.0000000e+00 apart, marking (T0323)G156.C as missing WARNING: atoms too close: (T0323)G156.N and (T0323)D157.N only 0.0000000e+00 apart, marking (T0323)G156.N as missing WARNING: atoms too close: (T0323)G156.CA and (T0323)D157.CA only 0.0000000e+00 apart, marking (T0323)G156.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.851485 # GDT_score = -41.3366 # GDT_score(maxd=8,maxw=2.9)= -40.4778 # GDT_score(maxd=8,maxw=3.2)= -38.136 # GDT_score(maxd=8,maxw=3.5)= -35.9938 # GDT_score(maxd=10,maxw=3.8)= -39.7707 # GDT_score(maxd=10,maxw=4)= -38.3861 # GDT_score(maxd=10,maxw=4.2)= -37.0769 # GDT_score(maxd=12,maxw=4.3)= -40.9458 # GDT_score(maxd=12,maxw=4.5)= -39.6068 # GDT_score(maxd=12,maxw=4.7)= -38.3137 # GDT_score(maxd=14,maxw=5.2)= -38.6515 # GDT_score(maxd=14,maxw=5.5)= -36.9213 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0323)V68.C and (T0323)L72.C only 0.0000000e+00 apart, marking (T0323)L72.C as missing WARNING: atoms too close: (T0323)G69.N and (T0323)E73.N only 0.0000000e+00 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)G69.CA and (T0323)E73.CA only 0.0000000e+00 apart, marking (T0323)G69.CA as missing WARNING: atoms too close: (T0323)S108.C and (T0323)F113.C only 0.0000000e+00 apart, marking (T0323)F113.C as missing WARNING: atoms too close: (T0323)G109.N and (T0323)T114.N only 0.0000000e+00 apart, marking (T0323)G109.N as missing WARNING: atoms too close: (T0323)G109.CA and (T0323)T114.CA only 0.0000000e+00 apart, marking (T0323)G109.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.821782 # GDT_score = -31.4356 # GDT_score(maxd=8,maxw=2.9)= -26.8302 # GDT_score(maxd=8,maxw=3.2)= -25.6144 # GDT_score(maxd=8,maxw=3.5)= -24.5664 # GDT_score(maxd=10,maxw=3.8)= -28.7122 # GDT_score(maxd=10,maxw=4)= -27.8936 # GDT_score(maxd=10,maxw=4.2)= -27.1311 # GDT_score(maxd=12,maxw=4.3)= -30.9801 # GDT_score(maxd=12,maxw=4.5)= -30.1313 # GDT_score(maxd=12,maxw=4.7)= -29.3109 # GDT_score(maxd=14,maxw=5.2)= -30.4769 # GDT_score(maxd=14,maxw=5.5)= -29.2673 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0323)K12.C and (T0323)D18.C only 0.0000000e+00 apart, marking (T0323)D18.C as missing WARNING: atoms too close: (T0323)T13.N and (T0323)S19.N only 0.0000000e+00 apart, marking (T0323)T13.N as missing WARNING: atoms too close: (T0323)T13.CA and (T0323)S19.CA only 0.0000000e+00 apart, marking (T0323)T13.CA as missing WARNING: atoms too close: (T0323)D112.C and (T0323)L116.C only 0.0000000e+00 apart, marking (T0323)L116.C as missing WARNING: atoms too close: (T0323)F113.N and (T0323)E117.N only 0.0000000e+00 apart, marking (T0323)F113.N as missing WARNING: atoms too close: (T0323)F113.CA and (T0323)E117.CA only 0.0000000e+00 apart, marking (T0323)F113.CA as missing WARNING: atoms too close: (T0323)A164.C and (T0323)G171.C only 0.0000000e+00 apart, marking (T0323)G171.C as missing WARNING: atoms too close: (T0323)K165.N and (T0323)E172.N only 0.0000000e+00 apart, marking (T0323)K165.N as missing WARNING: atoms too close: (T0323)K165.CA and (T0323)E172.CA only 0.0000000e+00 apart, marking (T0323)K165.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0323)L67.C and (T0323)V68.C only 0.0000000e+00 apart, marking (T0323)V68.C as missing WARNING: atoms too close: (T0323)V68.N and (T0323)G69.N only 0.0000000e+00 apart, marking (T0323)V68.N as missing WARNING: atoms too close: (T0323)V68.CA and (T0323)G69.CA only 0.0000000e+00 apart, marking (T0323)V68.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)E126.C only 0.0000000e+00 apart, marking (T0323)E126.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)K127.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)K127.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)R149.C and (T0323)L150.C only 0.0000000e+00 apart, marking (T0323)L150.C as missing WARNING: atoms too close: (T0323)L150.N and (T0323)D151.N only 0.0000000e+00 apart, marking (T0323)L150.N as missing WARNING: atoms too close: (T0323)L150.CA and (T0323)D151.CA only 0.0000000e+00 apart, marking (T0323)L150.CA as missing WARNING: atoms too close: (T0323)L167.C and (T0323)Y168.C only 0.0000000e+00 apart, marking (T0323)Y168.C as missing WARNING: atoms too close: (T0323)Y168.N and (T0323)G169.N only 0.0000000e+00 apart, marking (T0323)Y168.N as missing WARNING: atoms too close: (T0323)Y168.CA and (T0323)G169.CA only 0.0000000e+00 apart, marking (T0323)Y168.CA as missing WARNING: atoms too close: (T0323)G173.C and (T0323)D174.C only 0.0000000e+00 apart, marking (T0323)D174.C as missing WARNING: atoms too close: (T0323)D174.N and (T0323)G175.N only 0.0000000e+00 apart, marking (T0323)D174.N as missing WARNING: atoms too close: (T0323)D174.CA and (T0323)G175.CA only 0.0000000e+00 apart, marking (T0323)D174.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0323)D112.C and (T0323)E117.C only 0.0000000e+00 apart, marking (T0323)E117.C as missing WARNING: atoms too close: (T0323)F113.N and (T0323)G118.N only 0.0000000e+00 apart, marking (T0323)F113.N as missing WARNING: atoms too close: (T0323)F113.CA and (T0323)G118.CA only 0.0000000e+00 apart, marking (T0323)F113.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)D151.C and (T0323)L153.C only 0.0000000e+00 apart, marking (T0323)L153.C as missing WARNING: atoms too close: (T0323)V152.N and (T0323)S154.N only 0.0000000e+00 apart, marking (T0323)V152.N as missing WARNING: atoms too close: (T0323)V152.CA and (T0323)S154.CA only 0.0000000e+00 apart, marking (T0323)V152.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0323.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1092735354.pdb -s /var/tmp/to_scwrl_1092735354.seq -o /var/tmp/from_scwrl_1092735354.pdb > /var/tmp/scwrl_1092735354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1092735354.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_512916828.pdb -s /var/tmp/to_scwrl_512916828.seq -o /var/tmp/from_scwrl_512916828.pdb > /var/tmp/scwrl_512916828.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512916828.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_729276824.pdb -s /var/tmp/to_scwrl_729276824.seq -o /var/tmp/from_scwrl_729276824.pdb > /var/tmp/scwrl_729276824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729276824.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1402096109.pdb -s /var/tmp/to_scwrl_1402096109.seq -o /var/tmp/from_scwrl_1402096109.pdb > /var/tmp/scwrl_1402096109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1402096109.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_933646762.pdb -s /var/tmp/to_scwrl_933646762.seq -o /var/tmp/from_scwrl_933646762.pdb > /var/tmp/scwrl_933646762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_933646762.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1184342360.pdb -s /var/tmp/to_scwrl_1184342360.seq -o /var/tmp/from_scwrl_1184342360.pdb > /var/tmp/scwrl_1184342360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184342360.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_700616279.pdb -s /var/tmp/to_scwrl_700616279.seq -o /var/tmp/from_scwrl_700616279.pdb > /var/tmp/scwrl_700616279.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700616279.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2095914127.pdb -s /var/tmp/to_scwrl_2095914127.seq -o /var/tmp/from_scwrl_2095914127.pdb > /var/tmp/scwrl_2095914127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2095914127.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_505880551.pdb -s /var/tmp/to_scwrl_505880551.seq -o /var/tmp/from_scwrl_505880551.pdb > /var/tmp/scwrl_505880551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_505880551.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1813561923.pdb -s /var/tmp/to_scwrl_1813561923.seq -o /var/tmp/from_scwrl_1813561923.pdb > /var/tmp/scwrl_1813561923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813561923.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1812943386.pdb -s /var/tmp/to_scwrl_1812943386.seq -o /var/tmp/from_scwrl_1812943386.pdb > /var/tmp/scwrl_1812943386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812943386.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1667665847.pdb -s /var/tmp/to_scwrl_1667665847.seq -o /var/tmp/from_scwrl_1667665847.pdb > /var/tmp/scwrl_1667665847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667665847.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_735787963.pdb -s /var/tmp/to_scwrl_735787963.seq -o /var/tmp/from_scwrl_735787963.pdb > /var/tmp/scwrl_735787963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735787963.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2143958830.pdb -s /var/tmp/to_scwrl_2143958830.seq -o /var/tmp/from_scwrl_2143958830.pdb > /var/tmp/scwrl_2143958830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143958830.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_904098567.pdb -s /var/tmp/to_scwrl_904098567.seq -o /var/tmp/from_scwrl_904098567.pdb > /var/tmp/scwrl_904098567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_904098567.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_178763050.pdb -s /var/tmp/to_scwrl_178763050.seq -o /var/tmp/from_scwrl_178763050.pdb > /var/tmp/scwrl_178763050.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_178763050.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_869279788.pdb -s /var/tmp/to_scwrl_869279788.seq -o /var/tmp/from_scwrl_869279788.pdb > /var/tmp/scwrl_869279788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_869279788.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1903834786.pdb -s /var/tmp/to_scwrl_1903834786.seq -o /var/tmp/from_scwrl_1903834786.pdb > /var/tmp/scwrl_1903834786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903834786.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1684723681.pdb -s /var/tmp/to_scwrl_1684723681.seq -o /var/tmp/from_scwrl_1684723681.pdb > /var/tmp/scwrl_1684723681.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1684723681.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_908293705.pdb -s /var/tmp/to_scwrl_908293705.seq -o /var/tmp/from_scwrl_908293705.pdb > /var/tmp/scwrl_908293705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_908293705.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_260700336.pdb -s /var/tmp/to_scwrl_260700336.seq -o /var/tmp/from_scwrl_260700336.pdb > /var/tmp/scwrl_260700336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_260700336.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_30183557.pdb -s /var/tmp/to_scwrl_30183557.seq -o /var/tmp/from_scwrl_30183557.pdb > /var/tmp/scwrl_30183557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_30183557.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_762343439.pdb -s /var/tmp/to_scwrl_762343439.seq -o /var/tmp/from_scwrl_762343439.pdb > /var/tmp/scwrl_762343439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_762343439.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1770560861.pdb -s /var/tmp/to_scwrl_1770560861.seq -o /var/tmp/from_scwrl_1770560861.pdb > /var/tmp/scwrl_1770560861.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770560861.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2126868291.pdb -s /var/tmp/to_scwrl_2126868291.seq -o /var/tmp/from_scwrl_2126868291.pdb > /var/tmp/scwrl_2126868291.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2126868291.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_131736501.pdb -s /var/tmp/to_scwrl_131736501.seq -o /var/tmp/from_scwrl_131736501.pdb > /var/tmp/scwrl_131736501.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_131736501.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1220871354.pdb -s /var/tmp/to_scwrl_1220871354.seq -o /var/tmp/from_scwrl_1220871354.pdb > /var/tmp/scwrl_1220871354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1220871354.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1567811420.pdb -s /var/tmp/to_scwrl_1567811420.seq -o /var/tmp/from_scwrl_1567811420.pdb > /var/tmp/scwrl_1567811420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1567811420.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_477302261.pdb -s /var/tmp/to_scwrl_477302261.seq -o /var/tmp/from_scwrl_477302261.pdb > /var/tmp/scwrl_477302261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_477302261.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1977451625.pdb -s /var/tmp/to_scwrl_1977451625.seq -o /var/tmp/from_scwrl_1977451625.pdb > /var/tmp/scwrl_1977451625.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977451625.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_294996400.pdb -s /var/tmp/to_scwrl_294996400.seq -o /var/tmp/from_scwrl_294996400.pdb > /var/tmp/scwrl_294996400.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_294996400.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1570037615.pdb -s /var/tmp/to_scwrl_1570037615.seq -o /var/tmp/from_scwrl_1570037615.pdb > /var/tmp/scwrl_1570037615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1570037615.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_342884807.pdb -s /var/tmp/to_scwrl_342884807.seq -o /var/tmp/from_scwrl_342884807.pdb > /var/tmp/scwrl_342884807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342884807.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1024273224.pdb -s /var/tmp/to_scwrl_1024273224.seq -o /var/tmp/from_scwrl_1024273224.pdb > /var/tmp/scwrl_1024273224.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1024273224.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_824650078.pdb -s /var/tmp/to_scwrl_824650078.seq -o /var/tmp/from_scwrl_824650078.pdb > /var/tmp/scwrl_824650078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_824650078.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1276531568.pdb -s /var/tmp/to_scwrl_1276531568.seq -o /var/tmp/from_scwrl_1276531568.pdb > /var/tmp/scwrl_1276531568.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1276531568.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_61131937.pdb -s /var/tmp/to_scwrl_61131937.seq -o /var/tmp/from_scwrl_61131937.pdb > /var/tmp/scwrl_61131937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_61131937.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1525266356.pdb -s /var/tmp/to_scwrl_1525266356.seq -o /var/tmp/from_scwrl_1525266356.pdb > /var/tmp/scwrl_1525266356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1525266356.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1224962048.pdb -s /var/tmp/to_scwrl_1224962048.seq -o /var/tmp/from_scwrl_1224962048.pdb > /var/tmp/scwrl_1224962048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1224962048.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_567012488.pdb -s /var/tmp/to_scwrl_567012488.seq -o /var/tmp/from_scwrl_567012488.pdb > /var/tmp/scwrl_567012488.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_567012488.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1191344632.pdb -s /var/tmp/to_scwrl_1191344632.seq -o /var/tmp/from_scwrl_1191344632.pdb > /var/tmp/scwrl_1191344632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1191344632.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_890421788.pdb -s /var/tmp/to_scwrl_890421788.seq -o /var/tmp/from_scwrl_890421788.pdb > /var/tmp/scwrl_890421788.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_890421788.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_87194688.pdb -s /var/tmp/to_scwrl_87194688.seq -o /var/tmp/from_scwrl_87194688.pdb > /var/tmp/scwrl_87194688.log Error: Couldn't open file /var/tmp/from_scwrl_87194688.pdb or /var/tmp/from_scwrl_87194688.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_87194688_b.pdb or decoys//var/tmp/from_scwrl_87194688_b.pdb.gz for input Trying /var/tmp/from_scwrl_87194688_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_87194688_b.pdb or /var/tmp/from_scwrl_87194688_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_87194688_a.pdb or decoys//var/tmp/from_scwrl_87194688_a.pdb.gz for input Trying /var/tmp/from_scwrl_87194688_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_87194688_a.pdb or /var/tmp/from_scwrl_87194688_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_87194688.pdb or /var/tmp/from_scwrl_87194688_b.pdb or /var/tmp/from_scwrl_87194688_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1927132595.pdb -s /var/tmp/to_scwrl_1927132595.seq -o /var/tmp/from_scwrl_1927132595.pdb > /var/tmp/scwrl_1927132595.log Error: Couldn't open file /var/tmp/from_scwrl_1927132595.pdb or /var/tmp/from_scwrl_1927132595.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1927132595_b.pdb or decoys//var/tmp/from_scwrl_1927132595_b.pdb.gz for input Trying /var/tmp/from_scwrl_1927132595_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1927132595_b.pdb or /var/tmp/from_scwrl_1927132595_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1927132595_a.pdb or decoys//var/tmp/from_scwrl_1927132595_a.pdb.gz for input Trying /var/tmp/from_scwrl_1927132595_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1927132595_a.pdb or /var/tmp/from_scwrl_1927132595_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1927132595.pdb or /var/tmp/from_scwrl_1927132595_b.pdb or /var/tmp/from_scwrl_1927132595_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_886896971.pdb -s /var/tmp/to_scwrl_886896971.seq -o /var/tmp/from_scwrl_886896971.pdb > /var/tmp/scwrl_886896971.log Error: Couldn't open file /var/tmp/from_scwrl_886896971.pdb or /var/tmp/from_scwrl_886896971.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_886896971_b.pdb or decoys//var/tmp/from_scwrl_886896971_b.pdb.gz for input Trying /var/tmp/from_scwrl_886896971_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_886896971_b.pdb or /var/tmp/from_scwrl_886896971_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_886896971_a.pdb or decoys//var/tmp/from_scwrl_886896971_a.pdb.gz for input Trying /var/tmp/from_scwrl_886896971_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_886896971_a.pdb or /var/tmp/from_scwrl_886896971_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_886896971.pdb or /var/tmp/from_scwrl_886896971_b.pdb or /var/tmp/from_scwrl_886896971_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_991293256.pdb -s /var/tmp/to_scwrl_991293256.seq -o /var/tmp/from_scwrl_991293256.pdb > /var/tmp/scwrl_991293256.log Error: Couldn't open file /var/tmp/from_scwrl_991293256.pdb or /var/tmp/from_scwrl_991293256.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_991293256_b.pdb or decoys//var/tmp/from_scwrl_991293256_b.pdb.gz for input Trying /var/tmp/from_scwrl_991293256_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_991293256_b.pdb or /var/tmp/from_scwrl_991293256_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_991293256_a.pdb or decoys//var/tmp/from_scwrl_991293256_a.pdb.gz for input Trying /var/tmp/from_scwrl_991293256_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_991293256_a.pdb or /var/tmp/from_scwrl_991293256_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_991293256.pdb or /var/tmp/from_scwrl_991293256_b.pdb or /var/tmp/from_scwrl_991293256_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2105895646.pdb -s /var/tmp/to_scwrl_2105895646.seq -o /var/tmp/from_scwrl_2105895646.pdb > /var/tmp/scwrl_2105895646.log Error: Couldn't open file /var/tmp/from_scwrl_2105895646.pdb or /var/tmp/from_scwrl_2105895646.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2105895646_b.pdb or decoys//var/tmp/from_scwrl_2105895646_b.pdb.gz for input Trying /var/tmp/from_scwrl_2105895646_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_2105895646_b.pdb or /var/tmp/from_scwrl_2105895646_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2105895646_a.pdb or decoys//var/tmp/from_scwrl_2105895646_a.pdb.gz for input Trying /var/tmp/from_scwrl_2105895646_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_2105895646_a.pdb or /var/tmp/from_scwrl_2105895646_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_2105895646.pdb or /var/tmp/from_scwrl_2105895646_b.pdb or /var/tmp/from_scwrl_2105895646_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1756176758.pdb -s /var/tmp/to_scwrl_1756176758.seq -o /var/tmp/from_scwrl_1756176758.pdb > /var/tmp/scwrl_1756176758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1756176758.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_747644395.pdb -s /var/tmp/to_scwrl_747644395.seq -o /var/tmp/from_scwrl_747644395.pdb > /var/tmp/scwrl_747644395.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747644395.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1643135680.pdb -s /var/tmp/to_scwrl_1643135680.seq -o /var/tmp/from_scwrl_1643135680.pdb > /var/tmp/scwrl_1643135680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1643135680.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_516986816.pdb -s /var/tmp/to_scwrl_516986816.seq -o /var/tmp/from_scwrl_516986816.pdb > /var/tmp/scwrl_516986816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_516986816.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1008344731.pdb -s /var/tmp/to_scwrl_1008344731.seq -o /var/tmp/from_scwrl_1008344731.pdb > /var/tmp/scwrl_1008344731.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1008344731.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1673319237.pdb -s /var/tmp/to_scwrl_1673319237.seq -o /var/tmp/from_scwrl_1673319237.pdb > /var/tmp/scwrl_1673319237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673319237.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1279330254.pdb -s /var/tmp/to_scwrl_1279330254.seq -o /var/tmp/from_scwrl_1279330254.pdb > /var/tmp/scwrl_1279330254.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1279330254.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_631421945.pdb -s /var/tmp/to_scwrl_631421945.seq -o /var/tmp/from_scwrl_631421945.pdb > /var/tmp/scwrl_631421945.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_631421945.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1652703881.pdb -s /var/tmp/to_scwrl_1652703881.seq -o /var/tmp/from_scwrl_1652703881.pdb > /var/tmp/scwrl_1652703881.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1652703881.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1411066755.pdb -s /var/tmp/to_scwrl_1411066755.seq -o /var/tmp/from_scwrl_1411066755.pdb > /var/tmp/scwrl_1411066755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1411066755.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1852293300.pdb -s /var/tmp/to_scwrl_1852293300.seq -o /var/tmp/from_scwrl_1852293300.pdb > /var/tmp/scwrl_1852293300.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1852293300.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1073031655.pdb -s /var/tmp/to_scwrl_1073031655.seq -o /var/tmp/from_scwrl_1073031655.pdb > /var/tmp/scwrl_1073031655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1073031655.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1888369016.pdb -s /var/tmp/to_scwrl_1888369016.seq -o /var/tmp/from_scwrl_1888369016.pdb > /var/tmp/scwrl_1888369016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888369016.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1682261278.pdb -s /var/tmp/to_scwrl_1682261278.seq -o /var/tmp/from_scwrl_1682261278.pdb > /var/tmp/scwrl_1682261278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1682261278.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1368028055.pdb -s /var/tmp/to_scwrl_1368028055.seq -o /var/tmp/from_scwrl_1368028055.pdb > /var/tmp/scwrl_1368028055.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1368028055.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1310922984.pdb -s /var/tmp/to_scwrl_1310922984.seq -o /var/tmp/from_scwrl_1310922984.pdb > /var/tmp/scwrl_1310922984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1310922984.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2025146085.pdb -s /var/tmp/to_scwrl_2025146085.seq -o /var/tmp/from_scwrl_2025146085.pdb > /var/tmp/scwrl_2025146085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2025146085.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_244817632.pdb -s /var/tmp/to_scwrl_244817632.seq -o /var/tmp/from_scwrl_244817632.pdb > /var/tmp/scwrl_244817632.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_244817632.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2135573062.pdb -s /var/tmp/to_scwrl_2135573062.seq -o /var/tmp/from_scwrl_2135573062.pdb > /var/tmp/scwrl_2135573062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2135573062.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1154194006.pdb -s /var/tmp/to_scwrl_1154194006.seq -o /var/tmp/from_scwrl_1154194006.pdb > /var/tmp/scwrl_1154194006.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1154194006.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_305949570.pdb -s /var/tmp/to_scwrl_305949570.seq -o /var/tmp/from_scwrl_305949570.pdb > /var/tmp/scwrl_305949570.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_305949570.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1513355771.pdb -s /var/tmp/to_scwrl_1513355771.seq -o /var/tmp/from_scwrl_1513355771.pdb > /var/tmp/scwrl_1513355771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1513355771.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_231672408.pdb -s /var/tmp/to_scwrl_231672408.seq -o /var/tmp/from_scwrl_231672408.pdb > /var/tmp/scwrl_231672408.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_231672408.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_872962058.pdb -s /var/tmp/to_scwrl_872962058.seq -o /var/tmp/from_scwrl_872962058.pdb > /var/tmp/scwrl_872962058.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872962058.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_557216758.pdb -s /var/tmp/to_scwrl_557216758.seq -o /var/tmp/from_scwrl_557216758.pdb > /var/tmp/scwrl_557216758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_557216758.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1122094195.pdb -s /var/tmp/to_scwrl_1122094195.seq -o /var/tmp/from_scwrl_1122094195.pdb > /var/tmp/scwrl_1122094195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1122094195.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_960156747.pdb -s /var/tmp/to_scwrl_960156747.seq -o /var/tmp/from_scwrl_960156747.pdb > /var/tmp/scwrl_960156747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_960156747.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_336865706.pdb -s /var/tmp/to_scwrl_336865706.seq -o /var/tmp/from_scwrl_336865706.pdb > /var/tmp/scwrl_336865706.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336865706.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2008991167.pdb -s /var/tmp/to_scwrl_2008991167.seq -o /var/tmp/from_scwrl_2008991167.pdb > /var/tmp/scwrl_2008991167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2008991167.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1951450002.pdb -s /var/tmp/to_scwrl_1951450002.seq -o /var/tmp/from_scwrl_1951450002.pdb > /var/tmp/scwrl_1951450002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1951450002.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_295277705.pdb -s /var/tmp/to_scwrl_295277705.seq -o /var/tmp/from_scwrl_295277705.pdb > /var/tmp/scwrl_295277705.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_295277705.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1617684278.pdb -s /var/tmp/to_scwrl_1617684278.seq -o /var/tmp/from_scwrl_1617684278.pdb > /var/tmp/scwrl_1617684278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617684278.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_551610750.pdb -s /var/tmp/to_scwrl_551610750.seq -o /var/tmp/from_scwrl_551610750.pdb > /var/tmp/scwrl_551610750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_551610750.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1938413385.pdb -s /var/tmp/to_scwrl_1938413385.seq -o /var/tmp/from_scwrl_1938413385.pdb > /var/tmp/scwrl_1938413385.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938413385.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2134671095.pdb -s /var/tmp/to_scwrl_2134671095.seq -o /var/tmp/from_scwrl_2134671095.pdb > /var/tmp/scwrl_2134671095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2134671095.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1559955480.pdb -s /var/tmp/to_scwrl_1559955480.seq -o /var/tmp/from_scwrl_1559955480.pdb > /var/tmp/scwrl_1559955480.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559955480.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1464248976.pdb -s /var/tmp/to_scwrl_1464248976.seq -o /var/tmp/from_scwrl_1464248976.pdb > /var/tmp/scwrl_1464248976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1464248976.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1266517702.pdb -s /var/tmp/to_scwrl_1266517702.seq -o /var/tmp/from_scwrl_1266517702.pdb > /var/tmp/scwrl_1266517702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1266517702.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_43893778.pdb -s /var/tmp/to_scwrl_43893778.seq -o /var/tmp/from_scwrl_43893778.pdb > /var/tmp/scwrl_43893778.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43893778.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_969469211.pdb -s /var/tmp/to_scwrl_969469211.seq -o /var/tmp/from_scwrl_969469211.pdb > /var/tmp/scwrl_969469211.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_969469211.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_530100812.pdb -s /var/tmp/to_scwrl_530100812.seq -o /var/tmp/from_scwrl_530100812.pdb > /var/tmp/scwrl_530100812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_530100812.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1896187078.pdb -s /var/tmp/to_scwrl_1896187078.seq -o /var/tmp/from_scwrl_1896187078.pdb > /var/tmp/scwrl_1896187078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1896187078.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2042500866.pdb -s /var/tmp/to_scwrl_2042500866.seq -o /var/tmp/from_scwrl_2042500866.pdb > /var/tmp/scwrl_2042500866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2042500866.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_270986181.pdb -s /var/tmp/to_scwrl_270986181.seq -o /var/tmp/from_scwrl_270986181.pdb > /var/tmp/scwrl_270986181.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_270986181.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1430964710.pdb -s /var/tmp/to_scwrl_1430964710.seq -o /var/tmp/from_scwrl_1430964710.pdb > /var/tmp/scwrl_1430964710.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1430964710.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1263045274.pdb -s /var/tmp/to_scwrl_1263045274.seq -o /var/tmp/from_scwrl_1263045274.pdb > /var/tmp/scwrl_1263045274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1263045274.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1581909166.pdb -s /var/tmp/to_scwrl_1581909166.seq -o /var/tmp/from_scwrl_1581909166.pdb > /var/tmp/scwrl_1581909166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1581909166.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1308627148.pdb -s /var/tmp/to_scwrl_1308627148.seq -o /var/tmp/from_scwrl_1308627148.pdb > /var/tmp/scwrl_1308627148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1308627148.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1507862906.pdb -s /var/tmp/to_scwrl_1507862906.seq -o /var/tmp/from_scwrl_1507862906.pdb > /var/tmp/scwrl_1507862906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1507862906.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1569998581.pdb -s /var/tmp/to_scwrl_1569998581.seq -o /var/tmp/from_scwrl_1569998581.pdb > /var/tmp/scwrl_1569998581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1569998581.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_315337509.pdb -s /var/tmp/to_scwrl_315337509.seq -o /var/tmp/from_scwrl_315337509.pdb > /var/tmp/scwrl_315337509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315337509.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1813812476.pdb -s /var/tmp/to_scwrl_1813812476.seq -o /var/tmp/from_scwrl_1813812476.pdb > /var/tmp/scwrl_1813812476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1813812476.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_935870707.pdb -s /var/tmp/to_scwrl_935870707.seq -o /var/tmp/from_scwrl_935870707.pdb > /var/tmp/scwrl_935870707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_935870707.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_547009917.pdb -s /var/tmp/to_scwrl_547009917.seq -o /var/tmp/from_scwrl_547009917.pdb > /var/tmp/scwrl_547009917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547009917.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_539290888.pdb -s /var/tmp/to_scwrl_539290888.seq -o /var/tmp/from_scwrl_539290888.pdb > /var/tmp/scwrl_539290888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_539290888.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1493087464.pdb -s /var/tmp/to_scwrl_1493087464.seq -o /var/tmp/from_scwrl_1493087464.pdb > /var/tmp/scwrl_1493087464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493087464.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1669104113.pdb -s /var/tmp/to_scwrl_1669104113.seq -o /var/tmp/from_scwrl_1669104113.pdb > /var/tmp/scwrl_1669104113.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1669104113.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1499447634.pdb -s /var/tmp/to_scwrl_1499447634.seq -o /var/tmp/from_scwrl_1499447634.pdb > /var/tmp/scwrl_1499447634.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1499447634.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1829953170.pdb -s /var/tmp/to_scwrl_1829953170.seq -o /var/tmp/from_scwrl_1829953170.pdb > /var/tmp/scwrl_1829953170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1829953170.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1530611633.pdb -s /var/tmp/to_scwrl_1530611633.seq -o /var/tmp/from_scwrl_1530611633.pdb > /var/tmp/scwrl_1530611633.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1530611633.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1303413989.pdb -s /var/tmp/to_scwrl_1303413989.seq -o /var/tmp/from_scwrl_1303413989.pdb > /var/tmp/scwrl_1303413989.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1303413989.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2125230876.pdb -s /var/tmp/to_scwrl_2125230876.seq -o /var/tmp/from_scwrl_2125230876.pdb > /var/tmp/scwrl_2125230876.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2125230876.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1000812265.pdb -s /var/tmp/to_scwrl_1000812265.seq -o /var/tmp/from_scwrl_1000812265.pdb > /var/tmp/scwrl_1000812265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1000812265.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1855024739.pdb -s /var/tmp/to_scwrl_1855024739.seq -o /var/tmp/from_scwrl_1855024739.pdb > /var/tmp/scwrl_1855024739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1855024739.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1916160614.pdb -s /var/tmp/to_scwrl_1916160614.seq -o /var/tmp/from_scwrl_1916160614.pdb > /var/tmp/scwrl_1916160614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1916160614.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_987999713.pdb -s /var/tmp/to_scwrl_987999713.seq -o /var/tmp/from_scwrl_987999713.pdb > /var/tmp/scwrl_987999713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_987999713.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1267496572.pdb -s /var/tmp/to_scwrl_1267496572.seq -o /var/tmp/from_scwrl_1267496572.pdb > /var/tmp/scwrl_1267496572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1267496572.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1232925943.pdb -s /var/tmp/to_scwrl_1232925943.seq -o /var/tmp/from_scwrl_1232925943.pdb > /var/tmp/scwrl_1232925943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1232925943.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_107033769.pdb -s /var/tmp/to_scwrl_107033769.seq -o /var/tmp/from_scwrl_107033769.pdb > /var/tmp/scwrl_107033769.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107033769.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1311390350.pdb -s /var/tmp/to_scwrl_1311390350.seq -o /var/tmp/from_scwrl_1311390350.pdb > /var/tmp/scwrl_1311390350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1311390350.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_54911508.pdb -s /var/tmp/to_scwrl_54911508.seq -o /var/tmp/from_scwrl_54911508.pdb > /var/tmp/scwrl_54911508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54911508.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_637134581.pdb -s /var/tmp/to_scwrl_637134581.seq -o /var/tmp/from_scwrl_637134581.pdb > /var/tmp/scwrl_637134581.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_637134581.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1060093783.pdb -s /var/tmp/to_scwrl_1060093783.seq -o /var/tmp/from_scwrl_1060093783.pdb > /var/tmp/scwrl_1060093783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1060093783.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2097412374.pdb -s /var/tmp/to_scwrl_2097412374.seq -o /var/tmp/from_scwrl_2097412374.pdb > /var/tmp/scwrl_2097412374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2097412374.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_908120762.pdb -s /var/tmp/to_scwrl_908120762.seq -o /var/tmp/from_scwrl_908120762.pdb > /var/tmp/scwrl_908120762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_908120762.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_343574846.pdb -s /var/tmp/to_scwrl_343574846.seq -o /var/tmp/from_scwrl_343574846.pdb > /var/tmp/scwrl_343574846.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_343574846.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1212974001.pdb -s /var/tmp/to_scwrl_1212974001.seq -o /var/tmp/from_scwrl_1212974001.pdb > /var/tmp/scwrl_1212974001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1212974001.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_342546281.pdb -s /var/tmp/to_scwrl_342546281.seq -o /var/tmp/from_scwrl_342546281.pdb > /var/tmp/scwrl_342546281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_342546281.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1652201994.pdb -s /var/tmp/to_scwrl_1652201994.seq -o /var/tmp/from_scwrl_1652201994.pdb > /var/tmp/scwrl_1652201994.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1652201994.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_573353261.pdb -s /var/tmp/to_scwrl_573353261.seq -o /var/tmp/from_scwrl_573353261.pdb > /var/tmp/scwrl_573353261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573353261.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1912544863.pdb -s /var/tmp/to_scwrl_1912544863.seq -o /var/tmp/from_scwrl_1912544863.pdb > /var/tmp/scwrl_1912544863.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1912544863.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1967539503.pdb -s /var/tmp/to_scwrl_1967539503.seq -o /var/tmp/from_scwrl_1967539503.pdb > /var/tmp/scwrl_1967539503.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1967539503.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_239682091.pdb -s /var/tmp/to_scwrl_239682091.seq -o /var/tmp/from_scwrl_239682091.pdb > /var/tmp/scwrl_239682091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_239682091.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_700931923.pdb -s /var/tmp/to_scwrl_700931923.seq -o /var/tmp/from_scwrl_700931923.pdb > /var/tmp/scwrl_700931923.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700931923.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_367065774.pdb -s /var/tmp/to_scwrl_367065774.seq -o /var/tmp/from_scwrl_367065774.pdb > /var/tmp/scwrl_367065774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367065774.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_778972979.pdb -s /var/tmp/to_scwrl_778972979.seq -o /var/tmp/from_scwrl_778972979.pdb > /var/tmp/scwrl_778972979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_778972979.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_46535740.pdb -s /var/tmp/to_scwrl_46535740.seq -o /var/tmp/from_scwrl_46535740.pdb > /var/tmp/scwrl_46535740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_46535740.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2036169887.pdb -s /var/tmp/to_scwrl_2036169887.seq -o /var/tmp/from_scwrl_2036169887.pdb > /var/tmp/scwrl_2036169887.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2036169887.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_130936966.pdb -s /var/tmp/to_scwrl_130936966.seq -o /var/tmp/from_scwrl_130936966.pdb > /var/tmp/scwrl_130936966.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_130936966.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1876488910.pdb -s /var/tmp/to_scwrl_1876488910.seq -o /var/tmp/from_scwrl_1876488910.pdb > /var/tmp/scwrl_1876488910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1876488910.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1419297873.pdb -s /var/tmp/to_scwrl_1419297873.seq -o /var/tmp/from_scwrl_1419297873.pdb > /var/tmp/scwrl_1419297873.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419297873.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1434350955.pdb -s /var/tmp/to_scwrl_1434350955.seq -o /var/tmp/from_scwrl_1434350955.pdb > /var/tmp/scwrl_1434350955.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1434350955.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1854236139.pdb -s /var/tmp/to_scwrl_1854236139.seq -o /var/tmp/from_scwrl_1854236139.pdb > /var/tmp/scwrl_1854236139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1854236139.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_272626491.pdb -s /var/tmp/to_scwrl_272626491.seq -o /var/tmp/from_scwrl_272626491.pdb > /var/tmp/scwrl_272626491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_272626491.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1141892047.pdb -s /var/tmp/to_scwrl_1141892047.seq -o /var/tmp/from_scwrl_1141892047.pdb > /var/tmp/scwrl_1141892047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1141892047.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1622913107.pdb -s /var/tmp/to_scwrl_1622913107.seq -o /var/tmp/from_scwrl_1622913107.pdb > /var/tmp/scwrl_1622913107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1622913107.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1260626204.pdb -s /var/tmp/to_scwrl_1260626204.seq -o /var/tmp/from_scwrl_1260626204.pdb > /var/tmp/scwrl_1260626204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1260626204.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_261904973.pdb -s /var/tmp/to_scwrl_261904973.seq -o /var/tmp/from_scwrl_261904973.pdb > /var/tmp/scwrl_261904973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_261904973.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_708355404.pdb -s /var/tmp/to_scwrl_708355404.seq -o /var/tmp/from_scwrl_708355404.pdb > /var/tmp/scwrl_708355404.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708355404.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1367659973.pdb -s /var/tmp/to_scwrl_1367659973.seq -o /var/tmp/from_scwrl_1367659973.pdb > /var/tmp/scwrl_1367659973.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1367659973.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1573295323.pdb -s /var/tmp/to_scwrl_1573295323.seq -o /var/tmp/from_scwrl_1573295323.pdb > /var/tmp/scwrl_1573295323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1573295323.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_763266912.pdb -s /var/tmp/to_scwrl_763266912.seq -o /var/tmp/from_scwrl_763266912.pdb > /var/tmp/scwrl_763266912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_763266912.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2004794554.pdb -s /var/tmp/to_scwrl_2004794554.seq -o /var/tmp/from_scwrl_2004794554.pdb > /var/tmp/scwrl_2004794554.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2004794554.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_485905459.pdb -s /var/tmp/to_scwrl_485905459.seq -o /var/tmp/from_scwrl_485905459.pdb > /var/tmp/scwrl_485905459.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485905459.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_713195639.pdb -s /var/tmp/to_scwrl_713195639.seq -o /var/tmp/from_scwrl_713195639.pdb > /var/tmp/scwrl_713195639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_713195639.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_765431669.pdb -s /var/tmp/to_scwrl_765431669.seq -o /var/tmp/from_scwrl_765431669.pdb > /var/tmp/scwrl_765431669.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_765431669.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_829480305.pdb -s /var/tmp/to_scwrl_829480305.seq -o /var/tmp/from_scwrl_829480305.pdb > /var/tmp/scwrl_829480305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_829480305.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1926169640.pdb -s /var/tmp/to_scwrl_1926169640.seq -o /var/tmp/from_scwrl_1926169640.pdb > /var/tmp/scwrl_1926169640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1926169640.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1107977950.pdb -s /var/tmp/to_scwrl_1107977950.seq -o /var/tmp/from_scwrl_1107977950.pdb > /var/tmp/scwrl_1107977950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1107977950.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_334198653.pdb -s /var/tmp/to_scwrl_334198653.seq -o /var/tmp/from_scwrl_334198653.pdb > /var/tmp/scwrl_334198653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_334198653.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_352039255.pdb -s /var/tmp/to_scwrl_352039255.seq -o /var/tmp/from_scwrl_352039255.pdb > /var/tmp/scwrl_352039255.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_352039255.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_873039167.pdb -s /var/tmp/to_scwrl_873039167.seq -o /var/tmp/from_scwrl_873039167.pdb > /var/tmp/scwrl_873039167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_873039167.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_154254509.pdb -s /var/tmp/to_scwrl_154254509.seq -o /var/tmp/from_scwrl_154254509.pdb > /var/tmp/scwrl_154254509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_154254509.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_591721346.pdb -s /var/tmp/to_scwrl_591721346.seq -o /var/tmp/from_scwrl_591721346.pdb > /var/tmp/scwrl_591721346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_591721346.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1573971089.pdb -s /var/tmp/to_scwrl_1573971089.seq -o /var/tmp/from_scwrl_1573971089.pdb > /var/tmp/scwrl_1573971089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1573971089.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_521320283.pdb -s /var/tmp/to_scwrl_521320283.seq -o /var/tmp/from_scwrl_521320283.pdb > /var/tmp/scwrl_521320283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_521320283.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1370694324.pdb -s /var/tmp/to_scwrl_1370694324.seq -o /var/tmp/from_scwrl_1370694324.pdb > /var/tmp/scwrl_1370694324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1370694324.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1620506829.pdb -s /var/tmp/to_scwrl_1620506829.seq -o /var/tmp/from_scwrl_1620506829.pdb > /var/tmp/scwrl_1620506829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1620506829.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_410006523.pdb -s /var/tmp/to_scwrl_410006523.seq -o /var/tmp/from_scwrl_410006523.pdb > /var/tmp/scwrl_410006523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410006523.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1501631290.pdb -s /var/tmp/to_scwrl_1501631290.seq -o /var/tmp/from_scwrl_1501631290.pdb > /var/tmp/scwrl_1501631290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501631290.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1349512092.pdb -s /var/tmp/to_scwrl_1349512092.seq -o /var/tmp/from_scwrl_1349512092.pdb > /var/tmp/scwrl_1349512092.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1349512092.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1829304396.pdb -s /var/tmp/to_scwrl_1829304396.seq -o /var/tmp/from_scwrl_1829304396.pdb > /var/tmp/scwrl_1829304396.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1829304396.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_788498599.pdb -s /var/tmp/to_scwrl_788498599.seq -o /var/tmp/from_scwrl_788498599.pdb > /var/tmp/scwrl_788498599.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_788498599.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1056264586.pdb -s /var/tmp/to_scwrl_1056264586.seq -o /var/tmp/from_scwrl_1056264586.pdb > /var/tmp/scwrl_1056264586.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1056264586.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2101930888.pdb -s /var/tmp/to_scwrl_2101930888.seq -o /var/tmp/from_scwrl_2101930888.pdb > /var/tmp/scwrl_2101930888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2101930888.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1930390646.pdb -s /var/tmp/to_scwrl_1930390646.seq -o /var/tmp/from_scwrl_1930390646.pdb > /var/tmp/scwrl_1930390646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1930390646.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_531694046.pdb -s /var/tmp/to_scwrl_531694046.seq -o /var/tmp/from_scwrl_531694046.pdb > /var/tmp/scwrl_531694046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_531694046.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1215073445.pdb -s /var/tmp/to_scwrl_1215073445.seq -o /var/tmp/from_scwrl_1215073445.pdb > /var/tmp/scwrl_1215073445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1215073445.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_44811972.pdb -s /var/tmp/to_scwrl_44811972.seq -o /var/tmp/from_scwrl_44811972.pdb > /var/tmp/scwrl_44811972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_44811972.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1240049449.pdb -s /var/tmp/to_scwrl_1240049449.seq -o /var/tmp/from_scwrl_1240049449.pdb > /var/tmp/scwrl_1240049449.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1240049449.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_435249772.pdb -s /var/tmp/to_scwrl_435249772.seq -o /var/tmp/from_scwrl_435249772.pdb > /var/tmp/scwrl_435249772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_435249772.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1618107295.pdb -s /var/tmp/to_scwrl_1618107295.seq -o /var/tmp/from_scwrl_1618107295.pdb > /var/tmp/scwrl_1618107295.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1618107295.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2003316362.pdb -s /var/tmp/to_scwrl_2003316362.seq -o /var/tmp/from_scwrl_2003316362.pdb > /var/tmp/scwrl_2003316362.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2003316362.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_292560679.pdb -s /var/tmp/to_scwrl_292560679.seq -o /var/tmp/from_scwrl_292560679.pdb > /var/tmp/scwrl_292560679.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_292560679.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2104012755.pdb -s /var/tmp/to_scwrl_2104012755.seq -o /var/tmp/from_scwrl_2104012755.pdb > /var/tmp/scwrl_2104012755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2104012755.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_569028354.pdb -s /var/tmp/to_scwrl_569028354.seq -o /var/tmp/from_scwrl_569028354.pdb > /var/tmp/scwrl_569028354.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_569028354.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1057992348.pdb -s /var/tmp/to_scwrl_1057992348.seq -o /var/tmp/from_scwrl_1057992348.pdb > /var/tmp/scwrl_1057992348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1057992348.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_786009413.pdb -s /var/tmp/to_scwrl_786009413.seq -o /var/tmp/from_scwrl_786009413.pdb > /var/tmp/scwrl_786009413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_786009413.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_347714348.pdb -s /var/tmp/to_scwrl_347714348.seq -o /var/tmp/from_scwrl_347714348.pdb > /var/tmp/scwrl_347714348.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_347714348.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_18486651.pdb -s /var/tmp/to_scwrl_18486651.seq -o /var/tmp/from_scwrl_18486651.pdb > /var/tmp/scwrl_18486651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_18486651.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1120208065.pdb -s /var/tmp/to_scwrl_1120208065.seq -o /var/tmp/from_scwrl_1120208065.pdb > /var/tmp/scwrl_1120208065.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1120208065.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_699753603.pdb -s /var/tmp/to_scwrl_699753603.seq -o /var/tmp/from_scwrl_699753603.pdb > /var/tmp/scwrl_699753603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_699753603.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_891525818.pdb -s /var/tmp/to_scwrl_891525818.seq -o /var/tmp/from_scwrl_891525818.pdb > /var/tmp/scwrl_891525818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_891525818.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1274462575.pdb -s /var/tmp/to_scwrl_1274462575.seq -o /var/tmp/from_scwrl_1274462575.pdb > /var/tmp/scwrl_1274462575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274462575.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1291474948.pdb -s /var/tmp/to_scwrl_1291474948.seq -o /var/tmp/from_scwrl_1291474948.pdb > /var/tmp/scwrl_1291474948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1291474948.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_318013260.pdb -s /var/tmp/to_scwrl_318013260.seq -o /var/tmp/from_scwrl_318013260.pdb > /var/tmp/scwrl_318013260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_318013260.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1795782858.pdb -s /var/tmp/to_scwrl_1795782858.seq -o /var/tmp/from_scwrl_1795782858.pdb > /var/tmp/scwrl_1795782858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795782858.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_514685626.pdb -s /var/tmp/to_scwrl_514685626.seq -o /var/tmp/from_scwrl_514685626.pdb > /var/tmp/scwrl_514685626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_514685626.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1938520089.pdb -s /var/tmp/to_scwrl_1938520089.seq -o /var/tmp/from_scwrl_1938520089.pdb > /var/tmp/scwrl_1938520089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1938520089.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_58305735.pdb -s /var/tmp/to_scwrl_58305735.seq -o /var/tmp/from_scwrl_58305735.pdb > /var/tmp/scwrl_58305735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_58305735.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2016316916.pdb -s /var/tmp/to_scwrl_2016316916.seq -o /var/tmp/from_scwrl_2016316916.pdb > /var/tmp/scwrl_2016316916.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2016316916.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1140548535.pdb -s /var/tmp/to_scwrl_1140548535.seq -o /var/tmp/from_scwrl_1140548535.pdb > /var/tmp/scwrl_1140548535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140548535.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1887610131.pdb -s /var/tmp/to_scwrl_1887610131.seq -o /var/tmp/from_scwrl_1887610131.pdb > /var/tmp/scwrl_1887610131.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887610131.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_657331868.pdb -s /var/tmp/to_scwrl_657331868.seq -o /var/tmp/from_scwrl_657331868.pdb > /var/tmp/scwrl_657331868.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_657331868.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_49329474.pdb -s /var/tmp/to_scwrl_49329474.seq -o /var/tmp/from_scwrl_49329474.pdb > /var/tmp/scwrl_49329474.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_49329474.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1842057372.pdb -s /var/tmp/to_scwrl_1842057372.seq -o /var/tmp/from_scwrl_1842057372.pdb > /var/tmp/scwrl_1842057372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1842057372.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_440238867.pdb -s /var/tmp/to_scwrl_440238867.seq -o /var/tmp/from_scwrl_440238867.pdb > /var/tmp/scwrl_440238867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_440238867.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_581023520.pdb -s /var/tmp/to_scwrl_581023520.seq -o /var/tmp/from_scwrl_581023520.pdb > /var/tmp/scwrl_581023520.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_581023520.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_909647171.pdb -s /var/tmp/to_scwrl_909647171.seq -o /var/tmp/from_scwrl_909647171.pdb > /var/tmp/scwrl_909647171.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_909647171.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_485050839.pdb -s /var/tmp/to_scwrl_485050839.seq -o /var/tmp/from_scwrl_485050839.pdb > /var/tmp/scwrl_485050839.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_485050839.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1821072969.pdb -s /var/tmp/to_scwrl_1821072969.seq -o /var/tmp/from_scwrl_1821072969.pdb > /var/tmp/scwrl_1821072969.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1821072969.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1344896942.pdb -s /var/tmp/to_scwrl_1344896942.seq -o /var/tmp/from_scwrl_1344896942.pdb > /var/tmp/scwrl_1344896942.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1344896942.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2103158134.pdb -s /var/tmp/to_scwrl_2103158134.seq -o /var/tmp/from_scwrl_2103158134.pdb > /var/tmp/scwrl_2103158134.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2103158134.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1676905684.pdb -s /var/tmp/to_scwrl_1676905684.seq -o /var/tmp/from_scwrl_1676905684.pdb > /var/tmp/scwrl_1676905684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676905684.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1637457621.pdb -s /var/tmp/to_scwrl_1637457621.seq -o /var/tmp/from_scwrl_1637457621.pdb > /var/tmp/scwrl_1637457621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1637457621.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2059687242.pdb -s /var/tmp/to_scwrl_2059687242.seq -o /var/tmp/from_scwrl_2059687242.pdb > /var/tmp/scwrl_2059687242.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2059687242.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_98450392.pdb -s /var/tmp/to_scwrl_98450392.seq -o /var/tmp/from_scwrl_98450392.pdb > /var/tmp/scwrl_98450392.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_98450392.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_547966323.pdb -s /var/tmp/to_scwrl_547966323.seq -o /var/tmp/from_scwrl_547966323.pdb > /var/tmp/scwrl_547966323.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_547966323.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_698213009.pdb -s /var/tmp/to_scwrl_698213009.seq -o /var/tmp/from_scwrl_698213009.pdb > /var/tmp/scwrl_698213009.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_698213009.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_446164740.pdb -s /var/tmp/to_scwrl_446164740.seq -o /var/tmp/from_scwrl_446164740.pdb > /var/tmp/scwrl_446164740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_446164740.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_566452974.pdb -s /var/tmp/to_scwrl_566452974.seq -o /var/tmp/from_scwrl_566452974.pdb > /var/tmp/scwrl_566452974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_566452974.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1818421074.pdb -s /var/tmp/to_scwrl_1818421074.seq -o /var/tmp/from_scwrl_1818421074.pdb > /var/tmp/scwrl_1818421074.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1818421074.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1145918342.pdb -s /var/tmp/to_scwrl_1145918342.seq -o /var/tmp/from_scwrl_1145918342.pdb > /var/tmp/scwrl_1145918342.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1145918342.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1457978792.pdb -s /var/tmp/to_scwrl_1457978792.seq -o /var/tmp/from_scwrl_1457978792.pdb > /var/tmp/scwrl_1457978792.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1457978792.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_945400003.pdb -s /var/tmp/to_scwrl_945400003.seq -o /var/tmp/from_scwrl_945400003.pdb > /var/tmp/scwrl_945400003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_945400003.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_289909644.pdb -s /var/tmp/to_scwrl_289909644.seq -o /var/tmp/from_scwrl_289909644.pdb > /var/tmp/scwrl_289909644.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_289909644.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1775992052.pdb -s /var/tmp/to_scwrl_1775992052.seq -o /var/tmp/from_scwrl_1775992052.pdb > /var/tmp/scwrl_1775992052.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1775992052.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_593699215.pdb -s /var/tmp/to_scwrl_593699215.seq -o /var/tmp/from_scwrl_593699215.pdb > /var/tmp/scwrl_593699215.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_593699215.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 702, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 704, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 706, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 708, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_804595270.pdb -s /var/tmp/to_scwrl_804595270.seq -o /var/tmp/from_scwrl_804595270.pdb > /var/tmp/scwrl_804595270.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_804595270.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1567028495.pdb -s /var/tmp/to_scwrl_1567028495.seq -o /var/tmp/from_scwrl_1567028495.pdb > /var/tmp/scwrl_1567028495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1567028495.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_652004950.pdb -s /var/tmp/to_scwrl_652004950.seq -o /var/tmp/from_scwrl_652004950.pdb > /var/tmp/scwrl_652004950.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_652004950.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_673428539.pdb -s /var/tmp/to_scwrl_673428539.seq -o /var/tmp/from_scwrl_673428539.pdb > /var/tmp/scwrl_673428539.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_673428539.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_560093384.pdb -s /var/tmp/to_scwrl_560093384.seq -o /var/tmp/from_scwrl_560093384.pdb > /var/tmp/scwrl_560093384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_560093384.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_392131434.pdb -s /var/tmp/to_scwrl_392131434.seq -o /var/tmp/from_scwrl_392131434.pdb > /var/tmp/scwrl_392131434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_392131434.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1330760406.pdb -s /var/tmp/to_scwrl_1330760406.seq -o /var/tmp/from_scwrl_1330760406.pdb > /var/tmp/scwrl_1330760406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1330760406.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_609422858.pdb -s /var/tmp/to_scwrl_609422858.seq -o /var/tmp/from_scwrl_609422858.pdb > /var/tmp/scwrl_609422858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_609422858.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_86705160.pdb -s /var/tmp/to_scwrl_86705160.seq -o /var/tmp/from_scwrl_86705160.pdb > /var/tmp/scwrl_86705160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_86705160.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 374, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 686, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 688, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 690, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 692, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1770999273.pdb -s /var/tmp/to_scwrl_1770999273.seq -o /var/tmp/from_scwrl_1770999273.pdb > /var/tmp/scwrl_1770999273.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770999273.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1190446377.pdb -s /var/tmp/to_scwrl_1190446377.seq -o /var/tmp/from_scwrl_1190446377.pdb > /var/tmp/scwrl_1190446377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1190446377.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_996352331.pdb -s /var/tmp/to_scwrl_996352331.seq -o /var/tmp/from_scwrl_996352331.pdb > /var/tmp/scwrl_996352331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996352331.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_108566465.pdb -s /var/tmp/to_scwrl_108566465.seq -o /var/tmp/from_scwrl_108566465.pdb > /var/tmp/scwrl_108566465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_108566465.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_864035700.pdb -s /var/tmp/to_scwrl_864035700.seq -o /var/tmp/from_scwrl_864035700.pdb > /var/tmp/scwrl_864035700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_864035700.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_193765627.pdb -s /var/tmp/to_scwrl_193765627.seq -o /var/tmp/from_scwrl_193765627.pdb > /var/tmp/scwrl_193765627.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_193765627.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)L128.O and (T0323)T129.N only 0.000 apart, marking (T0323)T129.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_64240952.pdb -s /var/tmp/to_scwrl_64240952.seq -o /var/tmp/from_scwrl_64240952.pdb > /var/tmp/scwrl_64240952.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64240952.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_393457738.pdb -s /var/tmp/to_scwrl_393457738.seq -o /var/tmp/from_scwrl_393457738.pdb > /var/tmp/scwrl_393457738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_393457738.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1831223248.pdb -s /var/tmp/to_scwrl_1831223248.seq -o /var/tmp/from_scwrl_1831223248.pdb > /var/tmp/scwrl_1831223248.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1831223248.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)G218.O and (T0323)N219.N only 0.000 apart, marking (T0323)N219.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2123928195.pdb -s /var/tmp/to_scwrl_2123928195.seq -o /var/tmp/from_scwrl_2123928195.pdb > /var/tmp/scwrl_2123928195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2123928195.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)K36.O and (T0323)P37.N only 0.000 apart, marking (T0323)P37.N as missing WARNING: atoms too close: (T0323)V68.O and (T0323)G69.N only 0.000 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)D83.O and (T0323)E84.N only 0.000 apart, marking (T0323)E84.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_491908130.pdb -s /var/tmp/to_scwrl_491908130.seq -o /var/tmp/from_scwrl_491908130.pdb > /var/tmp/scwrl_491908130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_491908130.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_231705924.pdb -s /var/tmp/to_scwrl_231705924.seq -o /var/tmp/from_scwrl_231705924.pdb > /var/tmp/scwrl_231705924.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_231705924.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_674657557.pdb -s /var/tmp/to_scwrl_674657557.seq -o /var/tmp/from_scwrl_674657557.pdb > /var/tmp/scwrl_674657557.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_674657557.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_938072870.pdb -s /var/tmp/to_scwrl_938072870.seq -o /var/tmp/from_scwrl_938072870.pdb > /var/tmp/scwrl_938072870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938072870.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_798158899.pdb -s /var/tmp/to_scwrl_798158899.seq -o /var/tmp/from_scwrl_798158899.pdb > /var/tmp/scwrl_798158899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_798158899.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_345594984.pdb -s /var/tmp/to_scwrl_345594984.seq -o /var/tmp/from_scwrl_345594984.pdb > /var/tmp/scwrl_345594984.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345594984.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2083991212.pdb -s /var/tmp/to_scwrl_2083991212.seq -o /var/tmp/from_scwrl_2083991212.pdb > /var/tmp/scwrl_2083991212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083991212.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_108654044.pdb -s /var/tmp/to_scwrl_108654044.seq -o /var/tmp/from_scwrl_108654044.pdb > /var/tmp/scwrl_108654044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_108654044.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1290994987.pdb -s /var/tmp/to_scwrl_1290994987.seq -o /var/tmp/from_scwrl_1290994987.pdb > /var/tmp/scwrl_1290994987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1290994987.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_226417209.pdb -s /var/tmp/to_scwrl_226417209.seq -o /var/tmp/from_scwrl_226417209.pdb > /var/tmp/scwrl_226417209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_226417209.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1884646096.pdb -s /var/tmp/to_scwrl_1884646096.seq -o /var/tmp/from_scwrl_1884646096.pdb > /var/tmp/scwrl_1884646096.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1884646096.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1884694202.pdb -s /var/tmp/to_scwrl_1884694202.seq -o /var/tmp/from_scwrl_1884694202.pdb > /var/tmp/scwrl_1884694202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1884694202.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1031012479.pdb -s /var/tmp/to_scwrl_1031012479.seq -o /var/tmp/from_scwrl_1031012479.pdb > /var/tmp/scwrl_1031012479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031012479.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1304190944.pdb -s /var/tmp/to_scwrl_1304190944.seq -o /var/tmp/from_scwrl_1304190944.pdb > /var/tmp/scwrl_1304190944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1304190944.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_389215505.pdb -s /var/tmp/to_scwrl_389215505.seq -o /var/tmp/from_scwrl_389215505.pdb > /var/tmp/scwrl_389215505.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389215505.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1704441017.pdb -s /var/tmp/to_scwrl_1704441017.seq -o /var/tmp/from_scwrl_1704441017.pdb > /var/tmp/scwrl_1704441017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704441017.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1864284328.pdb -s /var/tmp/to_scwrl_1864284328.seq -o /var/tmp/from_scwrl_1864284328.pdb > /var/tmp/scwrl_1864284328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1864284328.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_781346939.pdb -s /var/tmp/to_scwrl_781346939.seq -o /var/tmp/from_scwrl_781346939.pdb > /var/tmp/scwrl_781346939.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_781346939.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 44.9032 sec, elapsed time= 526.931 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = 143.275 shub_TS1 costs 0 real_cost = 148.278 panther2_TS1-scwrl costs 0 real_cost = 104.462 panther2_TS1 costs 0 real_cost = 105.461 nFOLD_TS5-scwrl costs 0 real_cost = 303.592 nFOLD_TS5 costs 0 real_cost = 381.85 nFOLD_TS4-scwrl costs 0 real_cost = 120.75 nFOLD_TS4 costs 0 real_cost = 209.828 nFOLD_TS3-scwrl costs 0 real_cost = 216.953 nFOLD_TS3 costs 0 real_cost = 303.034 nFOLD_TS2-scwrl costs 0 real_cost = 71.1621 nFOLD_TS2 costs 0 real_cost = 166.73 nFOLD_TS1-scwrl costs 0 real_cost = 227.543 nFOLD_TS1 costs 0 real_cost = 304.689 mGen-3D_TS1-scwrl costs 0 real_cost = 33.5799 mGen-3D_TS1 costs 0 real_cost = 115.788 keasar-server_TS5-scwrl costs 0 real_cost = 7.09716 keasar-server_TS5 costs 0 real_cost = 9.00345 keasar-server_TS4-scwrl costs 0 real_cost = 41.1974 keasar-server_TS4 costs 0 real_cost = 39.5213 keasar-server_TS3-scwrl costs 0 real_cost = 81.6736 keasar-server_TS3 costs 0 real_cost = 83.3081 keasar-server_TS2-scwrl costs 0 real_cost = 42.0005 keasar-server_TS2 costs 0 real_cost = 44.0425 keasar-server_TS1-scwrl costs 0 real_cost = 23.136 keasar-server_TS1 costs 0 real_cost = 29.3682 karypis.srv_TS4-scwrl costs 0 real_cost = 137.872 karypis.srv_TS4 costs 0 real_cost = 137.825 karypis.srv_TS3-scwrl costs 0 real_cost = 117.011 karypis.srv_TS3 costs 0 real_cost = 117.011 karypis.srv_TS2-scwrl costs 0 real_cost = 166.723 karypis.srv_TS2 costs 0 real_cost = 161.447 karypis.srv_TS1-scwrl costs 0 real_cost = 103.935 karypis.srv_TS1 costs 0 real_cost = 109.993 karypis.srv.4_TS5-scwrl costs 0 real_cost = 260.898 karypis.srv.4_TS5 costs 0 real_cost = 260.89 karypis.srv.4_TS4-scwrl costs 0 real_cost = 288.617 karypis.srv.4_TS4 costs 0 real_cost = 288.618 karypis.srv.4_TS3-scwrl costs 0 real_cost = 295.941 karypis.srv.4_TS3 costs 0 real_cost = 295.955 karypis.srv.4_TS2-scwrl costs 0 real_cost = 335.52 karypis.srv.4_TS2 costs 0 real_cost = 335.489 karypis.srv.4_TS1-scwrl costs 0 real_cost = 257.614 karypis.srv.4_TS1 costs 0 real_cost = 257.614 karypis.srv.2_TS5-scwrl costs 0 real_cost = 109.162 karypis.srv.2_TS5 costs 0 real_cost = 109.162 karypis.srv.2_TS4-scwrl costs 0 real_cost = 128.714 karypis.srv.2_TS4 costs 0 real_cost = 128.714 karypis.srv.2_TS3-scwrl costs 0 real_cost = 120.641 karypis.srv.2_TS3 costs 0 real_cost = 120.651 karypis.srv.2_TS2-scwrl costs 0 real_cost = 131.765 karypis.srv.2_TS2 costs 0 real_cost = 131.765 karypis.srv.2_TS1-scwrl costs 0 real_cost = 127.746 karypis.srv.2_TS1 costs 0 real_cost = 127.746 gtg_AL5-scwrl costs 0 real_cost = 214.636 gtg_AL5 costs 0 real_cost = 320.926 gtg_AL4-scwrl costs 0 real_cost = 172.394 gtg_AL4 costs 0 real_cost = 296.61 gtg_AL3-scwrl costs 0 real_cost = 228.347 gtg_AL3 costs 0 real_cost = 308.877 gtg_AL2-scwrl costs 0 real_cost = 243.882 gtg_AL2 costs 0 real_cost = 333.984 gtg_AL1-scwrl costs 0 real_cost = 248.099 gtg_AL1 costs 0 real_cost = 335.204 forecast-s_AL5-scwrl costs 0 real_cost = 357.968 forecast-s_AL5 costs 0 real_cost = 474.787 forecast-s_AL4-scwrl costs 0 real_cost = 165.759 forecast-s_AL4 costs 0 real_cost = 269.176 forecast-s_AL3-scwrl costs 0 real_cost = 234.003 forecast-s_AL3 costs 0 real_cost = 345.911 forecast-s_AL2-scwrl costs 0 real_cost = 242.273 forecast-s_AL2 costs 0 real_cost = 351.944 forecast-s_AL1-scwrl costs 0 real_cost = 225.645 forecast-s_AL1 costs 0 real_cost = 343.374 beautshotbase_TS1-scwrl costs 0 real_cost = 87.2191 beautshotbase_TS1 costs 0 real_cost = 84.8455 beautshot_TS1-scwrl costs 0 real_cost = 137.055 beautshot_TS1 costs 0 real_cost = 138.556 Zhang-Server_TS5-scwrl costs 0 real_cost = 66.4474 Zhang-Server_TS5 costs 0 real_cost = 61.3469 Zhang-Server_TS4-scwrl costs 0 real_cost = -33.7308 Zhang-Server_TS4 costs 0 real_cost = -33.6508 Zhang-Server_TS3-scwrl costs 0 real_cost = -27.8245 Zhang-Server_TS3 costs 0 real_cost = -19.0528 Zhang-Server_TS2-scwrl costs 0 real_cost = 19.2564 Zhang-Server_TS2 costs 0 real_cost = 16.4932 Zhang-Server_TS1-scwrl costs 0 real_cost = 8.80925 Zhang-Server_TS1 costs 0 real_cost = 18.2186 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 228.82 UNI-EID_sfst_AL5 costs 0 real_cost = 324.506 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 243.194 UNI-EID_sfst_AL4 costs 0 real_cost = 325.524 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = 120.129 UNI-EID_sfst_AL3 costs 0 real_cost = 248.959 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = 44.9001 UNI-EID_sfst_AL2 costs 0 real_cost = 154.061 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = 120.827 UNI-EID_sfst_AL1 costs 0 real_cost = 244.506 UNI-EID_expm_TS1-scwrl costs 0 real_cost = 62.277 UNI-EID_expm_TS1 costs 0 real_cost = 183.657 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = 190.246 UNI-EID_bnmx_TS5 costs 0 real_cost = 304.021 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 242.063 UNI-EID_bnmx_TS4 costs 0 real_cost = 351.155 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = 120.129 UNI-EID_bnmx_TS3 costs 0 real_cost = 248.959 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = 34.1761 UNI-EID_bnmx_TS2 costs 0 real_cost = 155.324 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = 120.827 UNI-EID_bnmx_TS1 costs 0 real_cost = 244.506 SPARKS2_TS5-scwrl costs 0 real_cost = 152.463 SPARKS2_TS5 costs 0 real_cost = 151.314 SPARKS2_TS4-scwrl costs 0 real_cost = 159.238 SPARKS2_TS4 costs 0 real_cost = 151.351 SPARKS2_TS3-scwrl costs 0 real_cost = 5.4958 SPARKS2_TS3 costs 0 real_cost = 5.532 SPARKS2_TS2-scwrl costs 0 real_cost = 91.6988 SPARKS2_TS2 costs 0 real_cost = 90.426 SPARKS2_TS1-scwrl costs 0 real_cost = 125.411 SPARKS2_TS1 costs 0 real_cost = 138.856 SP4_TS5-scwrl costs 0 real_cost = 179.341 SP4_TS5 costs 0 real_cost = 176.27 SP4_TS4-scwrl costs 0 real_cost = 136.397 SP4_TS4 costs 0 real_cost = 140.517 SP4_TS3-scwrl costs 0 real_cost = 2.76859 SP4_TS3 costs 0 real_cost = 9.78246 SP4_TS2-scwrl costs 0 real_cost = 127.997 SP4_TS2 costs 0 real_cost = 123.526 SP4_TS1-scwrl costs 0 real_cost = 73.5012 SP4_TS1 costs 0 real_cost = 84.6194 SP3_TS5-scwrl costs 0 real_cost = 196.36 SP3_TS5 costs 0 real_cost = 194.899 SP3_TS4-scwrl costs 0 real_cost = 167.134 SP3_TS4 costs 0 real_cost = 171.714 SP3_TS3-scwrl costs 0 real_cost = 2.23463 SP3_TS3 costs 0 real_cost = 1.87756 SP3_TS2-scwrl costs 0 real_cost = 127.997 SP3_TS2 costs 0 real_cost = 123.526 SP3_TS1-scwrl costs 0 real_cost = 73.5012 SP3_TS1 costs 0 real_cost = 84.6194 SAM_T06_server_TS5-scwrl costs 0 real_cost = 214.212 SAM_T06_server_TS5 costs 0 real_cost = 192.162 SAM_T06_server_TS4-scwrl costs 0 real_cost = 9.5257 SAM_T06_server_TS4 costs 0 real_cost = -6.41372 SAM_T06_server_TS3-scwrl costs 0 real_cost = 143.796 SAM_T06_server_TS3 costs 0 real_cost = 125.412 SAM_T06_server_TS2-scwrl costs 0 real_cost = 182.732 SAM_T06_server_TS2 costs 0 real_cost = 159.182 SAM_T06_server_TS1-scwrl costs 0 real_cost = 69.8956 SAM_T06_server_TS1 costs 0 real_cost = 70.3472 SAM-T99_AL5-scwrl costs 0 real_cost = 109.857 SAM-T99_AL5 costs 0 real_cost = 223.969 SAM-T99_AL4-scwrl costs 0 real_cost = 115.612 SAM-T99_AL4 costs 0 real_cost = 230.064 SAM-T99_AL3-scwrl costs 0 real_cost = 174.235 SAM-T99_AL3 costs 0 real_cost = 294.81 SAM-T99_AL2-scwrl costs 0 real_cost = 94.1116 SAM-T99_AL2 costs 0 real_cost = 198.209 SAM-T99_AL1-scwrl costs 0 real_cost = 116.416 SAM-T99_AL1 costs 0 real_cost = 205.99 SAM-T02_AL5-scwrl costs 0 real_cost = 45.1621 SAM-T02_AL5 costs 0 real_cost = 164.011 SAM-T02_AL4-scwrl costs 0 real_cost = -1.13009 SAM-T02_AL4 costs 0 real_cost = 125.64 SAM-T02_AL3-scwrl costs 0 real_cost = 119.112 SAM-T02_AL3 costs 0 real_cost = 231.914 SAM-T02_AL2-scwrl costs 0 real_cost = 44.8834 SAM-T02_AL2 costs 0 real_cost = 164.963 SAM-T02_AL1-scwrl costs 0 real_cost = 37.3563 SAM-T02_AL1 costs 0 real_cost = 158.617 ROKKY_TS4-scwrl costs 0 real_cost = 104.503 ROKKY_TS4 costs 0 real_cost = 103.555 ROKKY_TS3-scwrl costs 0 real_cost = 177.672 ROKKY_TS3 costs 0 real_cost = 176.982 ROKKY_TS2-scwrl costs 0 real_cost = 173.286 ROKKY_TS2 costs 0 real_cost = 180.3 ROKKY_TS1-scwrl costs 0 real_cost = 138.07 ROKKY_TS1 costs 0 real_cost = 138.858 ROBETTA_TS5-scwrl costs 0 real_cost = 105.102 ROBETTA_TS5 costs 0 real_cost = 107.453 ROBETTA_TS4-scwrl costs 0 real_cost = 115.752 ROBETTA_TS4 costs 0 real_cost = 112.841 ROBETTA_TS3-scwrl costs 0 real_cost = 119.479 ROBETTA_TS3 costs 0 real_cost = 119.9 ROBETTA_TS2-scwrl costs 0 real_cost = 126.069 ROBETTA_TS2 costs 0 real_cost = 127.459 ROBETTA_TS1-scwrl costs 0 real_cost = 133.995 ROBETTA_TS1 costs 0 real_cost = 135.493 RAPTOR_TS5-scwrl costs 0 real_cost = 162.242 RAPTOR_TS5 costs 0 real_cost = 168.273 RAPTOR_TS4-scwrl costs 0 real_cost = 0.0634104 RAPTOR_TS4 costs 0 real_cost = 4.32458 RAPTOR_TS3-scwrl costs 0 real_cost = 158.766 RAPTOR_TS3 costs 0 real_cost = 161.058 RAPTOR_TS2-scwrl costs 0 real_cost = 156.542 RAPTOR_TS2 costs 0 real_cost = 152.144 RAPTOR_TS1-scwrl costs 0 real_cost = 69.898 RAPTOR_TS1 costs 0 real_cost = 71.8068 RAPTORESS_TS5-scwrl costs 0 real_cost = 185.088 RAPTORESS_TS5 costs 0 real_cost = 183.26 RAPTORESS_TS4-scwrl costs 0 real_cost = 13.7611 RAPTORESS_TS4 costs 0 real_cost = 16.6132 RAPTORESS_TS3-scwrl costs 0 real_cost = 199.226 RAPTORESS_TS3 costs 0 real_cost = 201.844 RAPTORESS_TS2-scwrl costs 0 real_cost = 182.17 RAPTORESS_TS2 costs 0 real_cost = 184.948 RAPTORESS_TS1-scwrl costs 0 real_cost = 99.3656 RAPTORESS_TS1 costs 0 real_cost = 107.998 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = 81.539 RAPTOR-ACE_TS5 costs 0 real_cost = 84.5872 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 2.23463 RAPTOR-ACE_TS4 costs 0 real_cost = 1.87756 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = 69.5856 RAPTOR-ACE_TS3 costs 0 real_cost = 69.3032 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 7.20109 RAPTOR-ACE_TS2 costs 0 real_cost = 12.9704 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = 13.2906 RAPTOR-ACE_TS1 costs 0 real_cost = 18.3345 Pmodeller6_TS5-scwrl costs 0 real_cost = 98.0752 Pmodeller6_TS5 costs 0 real_cost = 98.9974 Pmodeller6_TS4-scwrl costs 0 real_cost = 98.0752 Pmodeller6_TS4 costs 0 real_cost = 98.9974 Pmodeller6_TS3-scwrl costs 0 real_cost = 91.4418 Pmodeller6_TS3 costs 0 real_cost = 92.3534 Pmodeller6_TS2-scwrl costs 0 real_cost = 43.5466 Pmodeller6_TS2 costs 0 real_cost = 35.7858 Pmodeller6_TS1-scwrl costs 0 real_cost = 43.5466 Pmodeller6_TS1 costs 0 real_cost = 35.7858 Phyre-2_TS5-scwrl costs 0 real_cost = 167.269 Phyre-2_TS5 costs 0 real_cost = 160.304 Phyre-2_TS4-scwrl costs 0 real_cost = 164.118 Phyre-2_TS4 costs 0 real_cost = 161.418 Phyre-2_TS3-scwrl costs 0 real_cost = 164.118 Phyre-2_TS3 costs 0 real_cost = 161.418 Phyre-2_TS2-scwrl costs 0 real_cost = 164.768 Phyre-2_TS2 costs 0 real_cost = 167.451 Phyre-2_TS1-scwrl costs 0 real_cost = 144.364 Phyre-2_TS1 costs 0 real_cost = 147.02 Phyre-1_TS1-scwrl costs 0 real_cost = 123.686 Phyre-1_TS1 costs 0 real_cost = 124.289 Pcons6_TS5-scwrl costs 0 real_cost = 29.5443 Pcons6_TS5 costs 0 real_cost = 26.0708 Pcons6_TS4-scwrl costs 0 real_cost = -14.9258 Pcons6_TS4 costs 0 real_cost = -11.9275 Pcons6_TS3-scwrl costs 0 real_cost = 111.949 Pcons6_TS3 costs 0 real_cost = 111.603 Pcons6_TS2-scwrl costs 0 real_cost = 43.5466 Pcons6_TS2 costs 0 real_cost = 35.7858 Pcons6_TS1-scwrl costs 0 real_cost = -16.3521 Pcons6_TS1 costs 0 real_cost = -16.1318 PROTINFO_TS5-scwrl costs 0 real_cost = 34.8562 PROTINFO_TS5 costs 0 real_cost = 24.3295 PROTINFO_TS4-scwrl costs 0 real_cost = 24.9982 PROTINFO_TS4 costs 0 real_cost = 24.613 PROTINFO_TS3-scwrl costs 0 real_cost = 32.5958 PROTINFO_TS3 costs 0 real_cost = 41.5339 PROTINFO_TS2-scwrl costs 0 real_cost = 26.8311 PROTINFO_TS2 costs 0 real_cost = 34.3105 PROTINFO_TS1-scwrl costs 0 real_cost = 26.0217 PROTINFO_TS1 costs 0 real_cost = 24.9172 PROTINFO-AB_TS5-scwrl costs 0 real_cost = 70.1545 PROTINFO-AB_TS5 costs 0 real_cost = 71.5279 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 59.0657 PROTINFO-AB_TS4 costs 0 real_cost = 65.8332 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 40.8263 PROTINFO-AB_TS3 costs 0 real_cost = 37.5587 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 41.4162 PROTINFO-AB_TS2 costs 0 real_cost = 45.7591 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 43.5207 PROTINFO-AB_TS1 costs 0 real_cost = 50.6099 NN_PUT_lab_TS1-scwrl costs 0 real_cost = 169.928 NN_PUT_lab_TS1 costs 0 real_cost = 166.331 MetaTasser_TS5-scwrl costs 0 real_cost = -34.8825 MetaTasser_TS5 costs 0 real_cost = -39.5882 MetaTasser_TS4-scwrl costs 0 real_cost = 59.7631 MetaTasser_TS4 costs 0 real_cost = 53.3935 MetaTasser_TS3-scwrl costs 0 real_cost = -1.44824 MetaTasser_TS3 costs 0 real_cost = 0.53389 MetaTasser_TS2-scwrl costs 0 real_cost = 103.488 MetaTasser_TS2 costs 0 real_cost = 94.2853 MetaTasser_TS1-scwrl costs 0 real_cost = -61.1369 MetaTasser_TS1 costs 0 real_cost = -67.3064 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 227.302 Ma-OPUS-server_TS5 costs 0 real_cost = 222.824 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 197.718 Ma-OPUS-server_TS4 costs 0 real_cost = 194.339 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = 83.5169 Ma-OPUS-server_TS3 costs 0 real_cost = 86.4227 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 215.365 Ma-OPUS-server_TS2 costs 0 real_cost = 216.031 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 20.7838 Ma-OPUS-server_TS1 costs 0 real_cost = 16.8163 Ma-OPUS-server2_TS5-scwrl costs 0 real_cost = 181.982 Ma-OPUS-server2_TS5 costs 0 real_cost = 184.607 Ma-OPUS-server2_TS4-scwrl costs 0 real_cost = 227.302 Ma-OPUS-server2_TS4 costs 0 real_cost = 222.824 Ma-OPUS-server2_TS3-scwrl costs 0 real_cost = 78.6675 Ma-OPUS-server2_TS3 costs 0 real_cost = 87.4179 Ma-OPUS-server2_TS2-scwrl costs 0 real_cost = 9.35707 Ma-OPUS-server2_TS2 costs 0 real_cost = 14.5683 Ma-OPUS-server2_TS1-scwrl costs 0 real_cost = 245.604 Ma-OPUS-server2_TS1 costs 0 real_cost = 247.31 MIG_FROST_AL1-scwrl costs 0 real_cost = 152.656 MIG_FROST_AL1 costs 0 real_cost = 283.141 LOOPP_TS5-scwrl costs 0 real_cost = 4.24506 LOOPP_TS5 costs 0 real_cost = -0.171233 LOOPP_TS4-scwrl costs 0 real_cost = 65.9895 LOOPP_TS4 costs 0 real_cost = 60.2066 LOOPP_TS3-scwrl costs 0 real_cost = 154.665 LOOPP_TS3 costs 0 real_cost = 155.128 LOOPP_TS2-scwrl costs 0 real_cost = 137.036 LOOPP_TS2 costs 0 real_cost = 143.978 LOOPP_TS1-scwrl costs 0 real_cost = 169.928 LOOPP_TS1 costs 0 real_cost = 166.331 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 492.953 Huber-Torda-Server_TS5 costs 0 real_cost = 517.694 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 442.515 Huber-Torda-Server_TS4 costs 0 real_cost = 463.12 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 371.671 Huber-Torda-Server_TS3 costs 0 real_cost = 438.202 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 428.821 Huber-Torda-Server_TS2 costs 0 real_cost = 470.057 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = 147.939 Huber-Torda-Server_TS1 costs 0 real_cost = 217.805 HHpred3_TS1-scwrl costs 0 real_cost = 69.887 HHpred3_TS1 costs 0 real_cost = 78.8396 HHpred2_TS1-scwrl costs 0 real_cost = 69.887 HHpred2_TS1 costs 0 real_cost = 78.8396 HHpred1_TS1-scwrl costs 0 real_cost = 81.6226 HHpred1_TS1 costs 0 real_cost = 79.5305 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 45.59 GeneSilicoMetaServer_TS5 costs 0 real_cost = 44.7876 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -11.7223 GeneSilicoMetaServer_TS4 costs 0 real_cost = -4.51546 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 86.6375 GeneSilicoMetaServer_TS3 costs 0 real_cost = 86.5502 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = 122.057 GeneSilicoMetaServer_TS2 costs 0 real_cost = 119.518 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = 96.5075 GeneSilicoMetaServer_TS1 costs 0 real_cost = 103.223 FUNCTION_TS5-scwrl costs 0 real_cost = 133.083 FUNCTION_TS5 costs 0 real_cost = 137.875 FUNCTION_TS4-scwrl costs 0 real_cost = 108.474 FUNCTION_TS4 costs 0 real_cost = 97.2929 FUNCTION_TS3-scwrl costs 0 real_cost = 134.3 FUNCTION_TS3 costs 0 real_cost = 125.161 FUNCTION_TS2-scwrl costs 0 real_cost = 134.612 FUNCTION_TS2 costs 0 real_cost = 134.361 FUNCTION_TS1-scwrl costs 0 real_cost = 131.847 FUNCTION_TS1 costs 0 real_cost = 126.841 FUGUE_AL5-scwrl costs 0 real_cost = 326.055 FUGUE_AL5 costs 0 real_cost = 444.908 FUGUE_AL4-scwrl costs 0 real_cost = 341.705 FUGUE_AL4 costs 0 real_cost = 433.161 FUGUE_AL3-scwrl costs 0 real_cost = 249.62 FUGUE_AL3 costs 0 real_cost = 375.888 FUGUE_AL2-scwrl costs 0 real_cost = 7.47612 FUGUE_AL2 costs 0 real_cost = 139.185 FUGUE_AL1-scwrl costs 0 real_cost = 144.011 FUGUE_AL1 costs 0 real_cost = 265.245 FUGMOD_TS5-scwrl costs 0 real_cost = 260.699 FUGMOD_TS5 costs 0 real_cost = 263.793 FUGMOD_TS4-scwrl costs 0 real_cost = 306.911 FUGMOD_TS4 costs 0 real_cost = 312.631 FUGMOD_TS3-scwrl costs 0 real_cost = 214.735 FUGMOD_TS3 costs 0 real_cost = 208.794 FUGMOD_TS2-scwrl costs 0 real_cost = 0.419846 FUGMOD_TS2 costs 0 real_cost = -0.85197 FUGMOD_TS1-scwrl costs 0 real_cost = 123.314 FUGMOD_TS1 costs 0 real_cost = 122.113 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 245.744 FPSOLVER-SERVER_TS5 costs 0 real_cost = 246.921 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 244.071 FPSOLVER-SERVER_TS4 costs 0 real_cost = 250.799 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 262.595 FPSOLVER-SERVER_TS3 costs 0 real_cost = 259.916 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 267.876 FPSOLVER-SERVER_TS2 costs 0 real_cost = 273.767 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 252.115 FPSOLVER-SERVER_TS1 costs 0 real_cost = 252.086 FORTE2_AL5-scwrl costs 0 real_cost = 250.97 FORTE2_AL5 costs 0 real_cost = 364.054 FORTE2_AL4-scwrl costs 0 real_cost = 223.298 FORTE2_AL4 costs 0 real_cost = 358.848 FORTE2_AL3-scwrl costs 0 real_cost = 210.528 FORTE2_AL3 costs 0 real_cost = 336.962 FORTE2_AL2-scwrl costs 0 real_cost = 215.464 FORTE2_AL2 costs 0 real_cost = 343.585 FORTE2_AL1-scwrl costs 0 real_cost = 205.939 FORTE2_AL1 costs 0 real_cost = 343.67 FORTE1_AL5-scwrl costs 0 real_cost = 223.298 FORTE1_AL5 costs 0 real_cost = 358.848 FORTE1_AL4-scwrl costs 0 real_cost = 235.906 FORTE1_AL4 costs 0 real_cost = 357.295 FORTE1_AL3-scwrl costs 0 real_cost = 210.528 FORTE1_AL3 costs 0 real_cost = 336.962 FORTE1_AL2-scwrl costs 0 real_cost = 213.782 FORTE1_AL2 costs 0 real_cost = 341.627 FORTE1_AL1-scwrl costs 0 real_cost = 205.939 FORTE1_AL1 costs 0 real_cost = 343.67 FOLDpro_TS5-scwrl costs 0 real_cost = 299.388 FOLDpro_TS5 costs 0 real_cost = 294.438 FOLDpro_TS4-scwrl costs 0 real_cost = 183.36 FOLDpro_TS4 costs 0 real_cost = 179.791 FOLDpro_TS3-scwrl costs 0 real_cost = 201.539 FOLDpro_TS3 costs 0 real_cost = 218.298 FOLDpro_TS2-scwrl costs 0 real_cost = 28.4876 FOLDpro_TS2 costs 0 real_cost = 35.6848 FOLDpro_TS1-scwrl costs 0 real_cost = 6.53561 FOLDpro_TS1 costs 0 real_cost = 25.5499 FAMS_TS5-scwrl costs 0 real_cost = 58.879 FAMS_TS5 costs 0 real_cost = 52.7979 FAMS_TS4-scwrl costs 0 real_cost = 7.34133 FAMS_TS4 costs 0 real_cost = 8.44454 FAMS_TS3-scwrl costs 0 real_cost = 22.0627 FAMS_TS3 costs 0 real_cost = 28.7804 FAMS_TS2-scwrl costs 0 real_cost = 16.5525 FAMS_TS2 costs 0 real_cost = 6.77397 FAMS_TS1-scwrl costs 0 real_cost = 18.5339 FAMS_TS1 costs 0 real_cost = 16.8639 FAMSD_TS5-scwrl costs 0 real_cost = 30.8399 FAMSD_TS5 costs 0 real_cost = 29.5537 FAMSD_TS4-scwrl costs 0 real_cost = 128.054 FAMSD_TS4 costs 0 real_cost = 133.861 FAMSD_TS3-scwrl costs 0 real_cost = 131.123 FAMSD_TS3 costs 0 real_cost = 138.652 FAMSD_TS2-scwrl costs 0 real_cost = 68.3678 FAMSD_TS2 costs 0 real_cost = 55.3164 FAMSD_TS1-scwrl costs 0 real_cost = 45.182 FAMSD_TS1 costs 0 real_cost = 39.6042 Distill_TS5-scwrl costs 0 real_cost = 497.763 Distill_TS4-scwrl costs 0 real_cost = 498.043 Distill_TS3-scwrl costs 0 real_cost = 518.146 Distill_TS2-scwrl costs 0 real_cost = 519.552 Distill_TS1-scwrl costs 0 real_cost = 512.924 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 74.6077 CaspIta-FOX_TS5 costs 0 real_cost = 75.0219 CaspIta-FOX_TS4-scwrl costs 0 real_cost = 176.934 CaspIta-FOX_TS4 costs 0 real_cost = 167.985 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 194.368 CaspIta-FOX_TS3 costs 0 real_cost = 185.844 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 148.022 CaspIta-FOX_TS2 costs 0 real_cost = 149.615 CaspIta-FOX_TS1-scwrl costs 0 real_cost = 268.227 CaspIta-FOX_TS1 costs 0 real_cost = 257.93 CPHmodels_TS1-scwrl costs 0 real_cost = 151.91 CPHmodels_TS1 costs 0 real_cost = 153.65 CIRCLE_TS5-scwrl costs 0 real_cost = 34.0362 CIRCLE_TS5 costs 0 real_cost = 29.4034 CIRCLE_TS4-scwrl costs 0 real_cost = -5.52248 CIRCLE_TS4 costs 0 real_cost = -4.77411 CIRCLE_TS3-scwrl costs 0 real_cost = 22.0627 CIRCLE_TS3 costs 0 real_cost = 28.7804 CIRCLE_TS2-scwrl costs 0 real_cost = 7.34133 CIRCLE_TS2 costs 0 real_cost = 8.44454 CIRCLE_TS1-scwrl costs 0 real_cost = 16.5525 CIRCLE_TS1 costs 0 real_cost = 6.77397 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = 36.4209 Bilab-ENABLE_TS5 costs 0 real_cost = 36.4209 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = 44.4961 Bilab-ENABLE_TS4 costs 0 real_cost = 47.008 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = 37.6522 Bilab-ENABLE_TS3 costs 0 real_cost = 37.6522 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = 55.2511 Bilab-ENABLE_TS2 costs 0 real_cost = 55.2511 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = 48.7939 Bilab-ENABLE_TS1 costs 0 real_cost = 48.7939 BayesHH_TS1-scwrl costs 0 real_cost = 54.207 BayesHH_TS1 costs 0 real_cost = 55.4335 ABIpro_TS5-scwrl costs 0 real_cost = 208.17 ABIpro_TS5 costs 0 real_cost = 208.239 ABIpro_TS4-scwrl costs 0 real_cost = 208.154 ABIpro_TS4 costs 0 real_cost = 207.966 ABIpro_TS3-scwrl costs 0 real_cost = 152.73 ABIpro_TS3 costs 0 real_cost = 151.118 ABIpro_TS2-scwrl costs 0 real_cost = 195.785 ABIpro_TS2 costs 0 real_cost = 196.11 ABIpro_TS1-scwrl costs 0 real_cost = 178.29 ABIpro_TS1 costs 0 real_cost = 178.29 3Dpro_TS5-scwrl costs 0 real_cost = 132.747 3Dpro_TS5 costs 0 real_cost = 126.73 3Dpro_TS4-scwrl costs 0 real_cost = 208.927 3Dpro_TS4 costs 0 real_cost = 211.385 3Dpro_TS3-scwrl costs 0 real_cost = 104.224 3Dpro_TS3 costs 0 real_cost = 97.6601 3Dpro_TS2-scwrl costs 0 real_cost = 2.40766 3Dpro_TS2 costs 0 real_cost = 10.7621 3Dpro_TS1-scwrl costs 0 real_cost = -1.01676 3Dpro_TS1 costs 0 real_cost = 10.9922 3D-JIGSAW_TS5-scwrl costs 0 real_cost = 148.195 3D-JIGSAW_TS5 costs 0 real_cost = 151.873 3D-JIGSAW_TS4-scwrl costs 0 real_cost = 139.823 3D-JIGSAW_TS4 costs 0 real_cost = 144.924 3D-JIGSAW_TS3-scwrl costs 0 real_cost = 137.758 3D-JIGSAW_TS3 costs 0 real_cost = 149.804 3D-JIGSAW_TS2-scwrl costs 0 real_cost = 133.581 3D-JIGSAW_TS2 costs 0 real_cost = 145.835 3D-JIGSAW_TS1-scwrl costs 0 real_cost = 143.314 3D-JIGSAW_TS1 costs 0 real_cost = 156.035 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = 228.155 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = 221.462 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 164.899 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 167.662 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = 142.457 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = 142.698 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = 165.77 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = 168.682 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = 168.948 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = 170.006 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 151.503 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 152.863 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = 127.385 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = 129.831 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = 135.311 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = 136.068 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 119.116 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 121.196 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 128.702 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = 131.107 T0323.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 87.6461 T0323.try4-opt2.pdb.gz costs 0 real_cost = 87.5894 T0323.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = 91.1375 T0323.try4-opt1.pdb.gz costs 0 real_cost = 87.9769 T0323.try4-opt1-scwrl.pdb.gz costs 0 real_cost = 85.4619 T0323.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 116.02 T0323.try3-opt2.pdb.gz costs 0 real_cost = 117.275 T0323.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 118.922 T0323.try3-opt1.pdb.gz costs 0 real_cost = 114.661 T0323.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 112.869 T0323.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 88.8689 T0323.try2-opt2.pdb.gz costs 0 real_cost = 88.8963 T0323.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = 86.4612 T0323.try2-opt1.pdb.gz costs 0 real_cost = 92.01 T0323.try2-opt1-scwrl.pdb.gz costs 0 real_cost = 88.8103 T0323.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 93.429 T0323.try1-opt2.pdb.gz costs 0 real_cost = 92.9506 T0323.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = 94.7515 T0323.try1-opt1.pdb.gz costs 0 real_cost = 90.7246 T0323.try1-opt1-scwrl.pdb.gz costs 0 real_cost = 90.038 ../model5.ts-submitted costs 0 real_cost = 215.037 ../model4.ts-submitted costs 0 real_cost = 141.937 ../model3.ts-submitted costs 0 real_cost = 117.292 ../model2.ts-submitted costs 0 real_cost = 92.4496 ../model1.ts-submitted costs 0 real_cost = 87.5828 align5 costs 0 real_cost = 188.778 align4 costs 0 real_cost = 232.08 align3 costs 0 real_cost = 95.3532 align2 costs 0 real_cost = 211.716 align1 costs 0 real_cost = 141.456 T0323.try1-opt2.pdb costs 0 real_cost = 92.9505 model5-scwrl costs 0 real_cost = 234.964 model5.ts-submitted costs 0 real_cost = 215.037 model4-scwrl costs 0 real_cost = 164.556 model4.ts-submitted costs 0 real_cost = 141.937 model3-scwrl costs 0 real_cost = 115.222 model3.ts-submitted costs 0 real_cost = 117.292 model2-scwrl costs 0 real_cost = 92.5234 model2.ts-submitted costs 0 real_cost = 92.4496 model1-scwrl costs 0 real_cost = 84.9678 model1.ts-submitted costs 0 real_cost = 87.5828 T0323_1.real.pdb costs 0 real_cost = -702.6 # command:CPU_time= 195.357 sec, elapsed time= 677.47 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty rm -f decoys/evaluate_2.rdb sed -e s/XXX0000/T0323/ -e s/START_COL/1/ \ -e s/REAL_PDB/2h56A/ \ -e s/_domain/_2/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175141060 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.02208 sec, elapsed time= 6.26301 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.10007 sec, elapsed time= 6.57098 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0323 numbered 1 through 221 Created new target T0323 from T0323.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0323_2.real.pdb looking for model 1 Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 8.5387 sec, elapsed time= 9.04815 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 173 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -53.4483 # GDT_score(maxd=8,maxw=2.9)= -52.3721 # GDT_score(maxd=8,maxw=3.2)= -49.6096 # GDT_score(maxd=8,maxw=3.5)= -46.9055 # GDT_score(maxd=10,maxw=3.8)= -51.2447 # GDT_score(maxd=10,maxw=4)= -49.4456 # GDT_score(maxd=10,maxw=4.2)= -47.7129 # GDT_score(maxd=12,maxw=4.3)= -52.1976 # GDT_score(maxd=12,maxw=4.5)= -50.4525 # GDT_score(maxd=12,maxw=4.7)= -48.8192 # GDT_score(maxd=14,maxw=5.2)= -49.0001 # GDT_score(maxd=14,maxw=5.5)= -46.8671 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.3320000e+03 rmsd (weighted)= 5.3610560e+00 (unweighted)= 4.9249618e+01 superimposing iter= 1 total_weight= 2.6464392e+03 rmsd (weighted)= 2.9374994e+00 (unweighted)= 4.8948439e+01 superimposing iter= 2 total_weight= 1.1544389e+03 rmsd (weighted)= 2.5223809e+00 (unweighted)= 4.8797132e+01 superimposing iter= 3 total_weight= 9.1732759e+02 rmsd (weighted)= 2.4345024e+00 (unweighted)= 4.8636145e+01 superimposing iter= 4 total_weight= 9.1551134e+02 rmsd (weighted)= 2.3525407e+00 (unweighted)= 4.8466831e+01 superimposing iter= 5 total_weight= 9.2761552e+02 rmsd (weighted)= 2.2589594e+00 (unweighted)= 4.8301156e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2108791275.pdb -s /var/tmp/to_scwrl_2108791275.seq -o /var/tmp/from_scwrl_2108791275.pdb > /var/tmp/scwrl_2108791275.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2108791275.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -53.0172 # GDT_score(maxd=8,maxw=2.9)= -52.1972 # GDT_score(maxd=8,maxw=3.2)= -49.3385 # GDT_score(maxd=8,maxw=3.5)= -46.5843 # GDT_score(maxd=10,maxw=3.8)= -50.9763 # GDT_score(maxd=10,maxw=4)= -49.1663 # GDT_score(maxd=10,maxw=4.2)= -47.4268 # GDT_score(maxd=12,maxw=4.3)= -51.9377 # GDT_score(maxd=12,maxw=4.5)= -50.1768 # GDT_score(maxd=12,maxw=4.7)= -48.5185 # GDT_score(maxd=14,maxw=5.2)= -48.7284 # GDT_score(maxd=14,maxw=5.5)= -46.652 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1636068987.pdb -s /var/tmp/to_scwrl_1636068987.seq -o /var/tmp/from_scwrl_1636068987.pdb > /var/tmp/scwrl_1636068987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1636068987.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -48.2759 # GDT_score(maxd=8,maxw=2.9)= -46.7027 # GDT_score(maxd=8,maxw=3.2)= -44.2667 # GDT_score(maxd=8,maxw=3.5)= -41.9726 # GDT_score(maxd=10,maxw=3.8)= -46.3764 # GDT_score(maxd=10,maxw=4)= -44.9196 # GDT_score(maxd=10,maxw=4.2)= -43.5637 # GDT_score(maxd=12,maxw=4.3)= -47.9948 # GDT_score(maxd=12,maxw=4.5)= -46.5896 # GDT_score(maxd=12,maxw=4.7)= -45.2768 # GDT_score(maxd=14,maxw=5.2)= -45.8963 # GDT_score(maxd=14,maxw=5.5)= -43.955 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_413965965.pdb -s /var/tmp/to_scwrl_413965965.seq -o /var/tmp/from_scwrl_413965965.pdb > /var/tmp/scwrl_413965965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_413965965.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.905172 # GDT_score = -62.5 # GDT_score(maxd=8,maxw=2.9)= -66.439 # GDT_score(maxd=8,maxw=3.2)= -62.7331 # GDT_score(maxd=8,maxw=3.5)= -59.2806 # GDT_score(maxd=10,maxw=3.8)= -61.7701 # GDT_score(maxd=10,maxw=4)= -59.6468 # GDT_score(maxd=10,maxw=4.2)= -57.5281 # GDT_score(maxd=12,maxw=4.3)= -61.1222 # GDT_score(maxd=12,maxw=4.5)= -59.0587 # GDT_score(maxd=12,maxw=4.7)= -57.1052 # GDT_score(maxd=14,maxw=5.2)= -56.1445 # GDT_score(maxd=14,maxw=5.5)= -53.6329 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1989405071.pdb -s /var/tmp/to_scwrl_1989405071.seq -o /var/tmp/from_scwrl_1989405071.pdb > /var/tmp/scwrl_1989405071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1989405071.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# fraction of real conformation used = 0.87931 # GDT_score = -57.5431 # GDT_score(maxd=8,maxw=2.9)= -60.7602 # GDT_score(maxd=8,maxw=3.2)= -57.1489 # GDT_score(maxd=8,maxw=3.5)= -53.7661 # GDT_score(maxd=10,maxw=3.8)= -56.4856 # GDT_score(maxd=10,maxw=4)= -54.4455 # GDT_score(maxd=10,maxw=4.2)= -52.5328 # GDT_score(maxd=12,maxw=4.3)= -56.1379 # GDT_score(maxd=12,maxw=4.5)= -54.2705 # GDT_score(maxd=12,maxw=4.7)= -52.4907 # GDT_score(maxd=14,maxw=5.2)= -51.7285 # GDT_score(maxd=14,maxw=5.5)= -49.3771 # command:# request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1080223615.pdb -s /var/tmp/to_scwrl_1080223615.seq -o /var/tmp/from_scwrl_1080223615.pdb > /var/tmp/scwrl_1080223615.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1080223615.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0323.try1-opt2.pdb looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -53.0172 # GDT_score(maxd=8,maxw=2.9)= -52.1951 # GDT_score(maxd=8,maxw=3.2)= -49.3364 # GDT_score(maxd=8,maxw=3.5)= -46.5823 # GDT_score(maxd=10,maxw=3.8)= -50.9745 # GDT_score(maxd=10,maxw=4)= -49.1646 # GDT_score(maxd=10,maxw=4.2)= -47.4253 # GDT_score(maxd=12,maxw=4.3)= -51.9361 # GDT_score(maxd=12,maxw=4.5)= -50.1755 # GDT_score(maxd=12,maxw=4.7)= -48.5173 # GDT_score(maxd=14,maxw=5.2)= -48.7272 # GDT_score(maxd=14,maxw=5.5)= -46.6506 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.3320000e+03 rmsd (weighted)= 5.4270008e+00 (unweighted)= 4.9094682e+01 superimposing iter= 1 total_weight= 2.6681550e+03 rmsd (weighted)= 2.9573167e+00 (unweighted)= 4.8828846e+01 superimposing iter= 2 total_weight= 1.1830101e+03 rmsd (weighted)= 2.5065790e+00 (unweighted)= 4.8711386e+01 superimposing iter= 3 total_weight= 9.2573374e+02 rmsd (weighted)= 2.4106939e+00 (unweighted)= 4.8585716e+01 superimposing iter= 4 total_weight= 8.9249672e+02 rmsd (weighted)= 2.3625798e+00 (unweighted)= 4.8460443e+01 superimposing iter= 5 total_weight= 8.9658796e+02 rmsd (weighted)= 2.3104894e+00 (unweighted)= 4.8336696e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 1 WARNING: atoms too close: (T0323)V68.C and (T0323)L72.C only 0.0000000e+00 apart, marking (T0323)L72.C as missing WARNING: atoms too close: (T0323)G69.N and (T0323)E73.N only 0.0000000e+00 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)G69.CA and (T0323)E73.CA only 0.0000000e+00 apart, marking (T0323)G69.CA as missing WARNING: atoms too close: (T0323)S108.C and (T0323)F113.C only 0.0000000e+00 apart, marking (T0323)F113.C as missing WARNING: atoms too close: (T0323)G109.N and (T0323)T114.N only 0.0000000e+00 apart, marking (T0323)G109.N as missing WARNING: atoms too close: (T0323)G109.CA and (T0323)T114.CA only 0.0000000e+00 apart, marking (T0323)G109.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)L150.C and (T0323)D151.C only 0.0000000e+00 apart, marking (T0323)D151.C as missing WARNING: atoms too close: (T0323)D151.N and (T0323)V152.N only 0.0000000e+00 apart, marking (T0323)D151.N as missing WARNING: atoms too close: (T0323)D151.CA and (T0323)V152.CA only 0.0000000e+00 apart, marking (T0323)D151.CA as missing WARNING: atoms too close: (T0323)V155.C and (T0323)G156.C only 0.0000000e+00 apart, marking (T0323)G156.C as missing WARNING: atoms too close: (T0323)G156.N and (T0323)D157.N only 0.0000000e+00 apart, marking (T0323)G156.N as missing WARNING: atoms too close: (T0323)G156.CA and (T0323)D157.CA only 0.0000000e+00 apart, marking (T0323)G156.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.905172 # GDT_score = -62.7155 # GDT_score(maxd=8,maxw=2.9)= -66.411 # GDT_score(maxd=8,maxw=3.2)= -62.696 # GDT_score(maxd=8,maxw=3.5)= -59.2423 # GDT_score(maxd=10,maxw=3.8)= -61.7393 # GDT_score(maxd=10,maxw=4)= -59.6158 # GDT_score(maxd=10,maxw=4.2)= -57.5048 # GDT_score(maxd=12,maxw=4.3)= -61.0941 # GDT_score(maxd=12,maxw=4.5)= -59.037 # GDT_score(maxd=12,maxw=4.7)= -57.0846 # GDT_score(maxd=14,maxw=5.2)= -56.1257 # GDT_score(maxd=14,maxw=5.5)= -53.6153 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 2 WARNING: atoms too close: (T0323)V68.C and (T0323)L72.C only 0.0000000e+00 apart, marking (T0323)L72.C as missing WARNING: atoms too close: (T0323)G69.N and (T0323)E73.N only 0.0000000e+00 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)G69.CA and (T0323)E73.CA only 0.0000000e+00 apart, marking (T0323)G69.CA as missing WARNING: atoms too close: (T0323)S108.C and (T0323)F113.C only 0.0000000e+00 apart, marking (T0323)F113.C as missing WARNING: atoms too close: (T0323)G109.N and (T0323)T114.N only 0.0000000e+00 apart, marking (T0323)G109.N as missing WARNING: atoms too close: (T0323)G109.CA and (T0323)T114.CA only 0.0000000e+00 apart, marking (T0323)G109.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.896552 # GDT_score = -58.8362 # GDT_score(maxd=8,maxw=2.9)= -62.2922 # GDT_score(maxd=8,maxw=3.2)= -58.4572 # GDT_score(maxd=8,maxw=3.5)= -54.9583 # GDT_score(maxd=10,maxw=3.8)= -57.7255 # GDT_score(maxd=10,maxw=4)= -55.6168 # GDT_score(maxd=10,maxw=4.2)= -53.6481 # GDT_score(maxd=12,maxw=4.3)= -57.3335 # GDT_score(maxd=12,maxw=4.5)= -55.412 # GDT_score(maxd=12,maxw=4.7)= -53.59 # GDT_score(maxd=14,maxw=5.2)= -52.8288 # GDT_score(maxd=14,maxw=5.5)= -50.4149 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 3 WARNING: atoms too close: (T0323)K12.C and (T0323)D18.C only 0.0000000e+00 apart, marking (T0323)D18.C as missing WARNING: atoms too close: (T0323)T13.N and (T0323)S19.N only 0.0000000e+00 apart, marking (T0323)T13.N as missing WARNING: atoms too close: (T0323)T13.CA and (T0323)S19.CA only 0.0000000e+00 apart, marking (T0323)T13.CA as missing WARNING: atoms too close: (T0323)D112.C and (T0323)L116.C only 0.0000000e+00 apart, marking (T0323)L116.C as missing WARNING: atoms too close: (T0323)F113.N and (T0323)E117.N only 0.0000000e+00 apart, marking (T0323)F113.N as missing WARNING: atoms too close: (T0323)F113.CA and (T0323)E117.CA only 0.0000000e+00 apart, marking (T0323)F113.CA as missing WARNING: atoms too close: (T0323)A164.C and (T0323)G171.C only 0.0000000e+00 apart, marking (T0323)G171.C as missing WARNING: atoms too close: (T0323)K165.N and (T0323)E172.N only 0.0000000e+00 apart, marking (T0323)K165.N as missing WARNING: atoms too close: (T0323)K165.CA and (T0323)E172.CA only 0.0000000e+00 apart, marking (T0323)K165.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 4 WARNING: atoms too close: (T0323)L67.C and (T0323)V68.C only 0.0000000e+00 apart, marking (T0323)V68.C as missing WARNING: atoms too close: (T0323)V68.N and (T0323)G69.N only 0.0000000e+00 apart, marking (T0323)V68.N as missing WARNING: atoms too close: (T0323)V68.CA and (T0323)G69.CA only 0.0000000e+00 apart, marking (T0323)V68.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)E126.C only 0.0000000e+00 apart, marking (T0323)E126.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)K127.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)K127.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)R149.C and (T0323)L150.C only 0.0000000e+00 apart, marking (T0323)L150.C as missing WARNING: atoms too close: (T0323)L150.N and (T0323)D151.N only 0.0000000e+00 apart, marking (T0323)L150.N as missing WARNING: atoms too close: (T0323)L150.CA and (T0323)D151.CA only 0.0000000e+00 apart, marking (T0323)L150.CA as missing WARNING: atoms too close: (T0323)L167.C and (T0323)Y168.C only 0.0000000e+00 apart, marking (T0323)Y168.C as missing WARNING: atoms too close: (T0323)Y168.N and (T0323)G169.N only 0.0000000e+00 apart, marking (T0323)Y168.N as missing WARNING: atoms too close: (T0323)Y168.CA and (T0323)G169.CA only 0.0000000e+00 apart, marking (T0323)Y168.CA as missing WARNING: atoms too close: (T0323)G173.C and (T0323)D174.C only 0.0000000e+00 apart, marking (T0323)D174.C as missing WARNING: atoms too close: (T0323)D174.N and (T0323)G175.N only 0.0000000e+00 apart, marking (T0323)D174.N as missing WARNING: atoms too close: (T0323)D174.CA and (T0323)G175.CA only 0.0000000e+00 apart, marking (T0323)D174.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0323.undertaker-align.pdb looking for model 5 WARNING: atoms too close: (T0323)D112.C and (T0323)E117.C only 0.0000000e+00 apart, marking (T0323)E117.C as missing WARNING: atoms too close: (T0323)F113.N and (T0323)G118.N only 0.0000000e+00 apart, marking (T0323)F113.N as missing WARNING: atoms too close: (T0323)F113.CA and (T0323)G118.CA only 0.0000000e+00 apart, marking (T0323)F113.CA as missing WARNING: atoms too close: (T0323)T122.C and (T0323)V124.C only 0.0000000e+00 apart, marking (T0323)V124.C as missing WARNING: atoms too close: (T0323)T123.N and (T0323)I125.N only 0.0000000e+00 apart, marking (T0323)T123.N as missing WARNING: atoms too close: (T0323)T123.CA and (T0323)I125.CA only 0.0000000e+00 apart, marking (T0323)T123.CA as missing WARNING: atoms too close: (T0323)D151.C and (T0323)L153.C only 0.0000000e+00 apart, marking (T0323)L153.C as missing WARNING: atoms too close: (T0323)V152.N and (T0323)S154.N only 0.0000000e+00 apart, marking (T0323)V152.N as missing WARNING: atoms too close: (T0323)V152.CA and (T0323)S154.CA only 0.0000000e+00 apart, marking (T0323)V152.CA as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0323.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 136 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0323.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_470095452.pdb -s /var/tmp/to_scwrl_470095452.seq -o /var/tmp/from_scwrl_470095452.pdb > /var/tmp/scwrl_470095452.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_470095452.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1595043002.pdb -s /var/tmp/to_scwrl_1595043002.seq -o /var/tmp/from_scwrl_1595043002.pdb > /var/tmp/scwrl_1595043002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595043002.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1667168077.pdb -s /var/tmp/to_scwrl_1667168077.seq -o /var/tmp/from_scwrl_1667168077.pdb > /var/tmp/scwrl_1667168077.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1667168077.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1838713896.pdb -s /var/tmp/to_scwrl_1838713896.seq -o /var/tmp/from_scwrl_1838713896.pdb > /var/tmp/scwrl_1838713896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1838713896.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1203372150.pdb -s /var/tmp/to_scwrl_1203372150.seq -o /var/tmp/from_scwrl_1203372150.pdb > /var/tmp/scwrl_1203372150.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1203372150.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1779689951.pdb -s /var/tmp/to_scwrl_1779689951.seq -o /var/tmp/from_scwrl_1779689951.pdb > /var/tmp/scwrl_1779689951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1779689951.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_218132794.pdb -s /var/tmp/to_scwrl_218132794.seq -o /var/tmp/from_scwrl_218132794.pdb > /var/tmp/scwrl_218132794.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_218132794.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1849735294.pdb -s /var/tmp/to_scwrl_1849735294.seq -o /var/tmp/from_scwrl_1849735294.pdb > /var/tmp/scwrl_1849735294.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1849735294.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_742453212.pdb -s /var/tmp/to_scwrl_742453212.seq -o /var/tmp/from_scwrl_742453212.pdb > /var/tmp/scwrl_742453212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_742453212.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1414475457.pdb -s /var/tmp/to_scwrl_1414475457.seq -o /var/tmp/from_scwrl_1414475457.pdb > /var/tmp/scwrl_1414475457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414475457.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_178355198.pdb -s /var/tmp/to_scwrl_178355198.seq -o /var/tmp/from_scwrl_178355198.pdb > /var/tmp/scwrl_178355198.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_178355198.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_50191955.pdb -s /var/tmp/to_scwrl_50191955.seq -o /var/tmp/from_scwrl_50191955.pdb > /var/tmp/scwrl_50191955.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_50191955.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1064444413.pdb -s /var/tmp/to_scwrl_1064444413.seq -o /var/tmp/from_scwrl_1064444413.pdb > /var/tmp/scwrl_1064444413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064444413.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1111028842.pdb -s /var/tmp/to_scwrl_1111028842.seq -o /var/tmp/from_scwrl_1111028842.pdb > /var/tmp/scwrl_1111028842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1111028842.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_599534804.pdb -s /var/tmp/to_scwrl_599534804.seq -o /var/tmp/from_scwrl_599534804.pdb > /var/tmp/scwrl_599534804.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599534804.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1762950527.pdb -s /var/tmp/to_scwrl_1762950527.seq -o /var/tmp/from_scwrl_1762950527.pdb > /var/tmp/scwrl_1762950527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1762950527.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2116397107.pdb -s /var/tmp/to_scwrl_2116397107.seq -o /var/tmp/from_scwrl_2116397107.pdb > /var/tmp/scwrl_2116397107.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2116397107.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1473212624.pdb -s /var/tmp/to_scwrl_1473212624.seq -o /var/tmp/from_scwrl_1473212624.pdb > /var/tmp/scwrl_1473212624.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1473212624.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1941680944.pdb -s /var/tmp/to_scwrl_1941680944.seq -o /var/tmp/from_scwrl_1941680944.pdb > /var/tmp/scwrl_1941680944.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1941680944.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 147 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2134635054.pdb -s /var/tmp/to_scwrl_2134635054.seq -o /var/tmp/from_scwrl_2134635054.pdb > /var/tmp/scwrl_2134635054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2134635054.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_336669646.pdb -s /var/tmp/to_scwrl_336669646.seq -o /var/tmp/from_scwrl_336669646.pdb > /var/tmp/scwrl_336669646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_336669646.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 195 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2123889516.pdb -s /var/tmp/to_scwrl_2123889516.seq -o /var/tmp/from_scwrl_2123889516.pdb > /var/tmp/scwrl_2123889516.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2123889516.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 196 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1189570399.pdb -s /var/tmp/to_scwrl_1189570399.seq -o /var/tmp/from_scwrl_1189570399.pdb > /var/tmp/scwrl_1189570399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1189570399.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 203 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_879087127.pdb -s /var/tmp/to_scwrl_879087127.seq -o /var/tmp/from_scwrl_879087127.pdb > /var/tmp/scwrl_879087127.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_879087127.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_101969464.pdb -s /var/tmp/to_scwrl_101969464.seq -o /var/tmp/from_scwrl_101969464.pdb > /var/tmp/scwrl_101969464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101969464.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_112243168.pdb -s /var/tmp/to_scwrl_112243168.seq -o /var/tmp/from_scwrl_112243168.pdb > /var/tmp/scwrl_112243168.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_112243168.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_840394755.pdb -s /var/tmp/to_scwrl_840394755.seq -o /var/tmp/from_scwrl_840394755.pdb > /var/tmp/scwrl_840394755.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_840394755.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1738038451.pdb -s /var/tmp/to_scwrl_1738038451.seq -o /var/tmp/from_scwrl_1738038451.pdb > /var/tmp/scwrl_1738038451.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1738038451.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_526209133.pdb -s /var/tmp/to_scwrl_526209133.seq -o /var/tmp/from_scwrl_526209133.pdb > /var/tmp/scwrl_526209133.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_526209133.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_682316180.pdb -s /var/tmp/to_scwrl_682316180.seq -o /var/tmp/from_scwrl_682316180.pdb > /var/tmp/scwrl_682316180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_682316180.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_670778420.pdb -s /var/tmp/to_scwrl_670778420.seq -o /var/tmp/from_scwrl_670778420.pdb > /var/tmp/scwrl_670778420.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_670778420.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_996304585.pdb -s /var/tmp/to_scwrl_996304585.seq -o /var/tmp/from_scwrl_996304585.pdb > /var/tmp/scwrl_996304585.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996304585.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_129875535.pdb -s /var/tmp/to_scwrl_129875535.seq -o /var/tmp/from_scwrl_129875535.pdb > /var/tmp/scwrl_129875535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_129875535.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_190462851.pdb -s /var/tmp/to_scwrl_190462851.seq -o /var/tmp/from_scwrl_190462851.pdb > /var/tmp/scwrl_190462851.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_190462851.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_687534834.pdb -s /var/tmp/to_scwrl_687534834.seq -o /var/tmp/from_scwrl_687534834.pdb > /var/tmp/scwrl_687534834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_687534834.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1333247685.pdb -s /var/tmp/to_scwrl_1333247685.seq -o /var/tmp/from_scwrl_1333247685.pdb > /var/tmp/scwrl_1333247685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1333247685.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1970152802.pdb -s /var/tmp/to_scwrl_1970152802.seq -o /var/tmp/from_scwrl_1970152802.pdb > /var/tmp/scwrl_1970152802.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1970152802.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_905667628.pdb -s /var/tmp/to_scwrl_905667628.seq -o /var/tmp/from_scwrl_905667628.pdb > /var/tmp/scwrl_905667628.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_905667628.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1035499334.pdb -s /var/tmp/to_scwrl_1035499334.seq -o /var/tmp/from_scwrl_1035499334.pdb > /var/tmp/scwrl_1035499334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035499334.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_565122367.pdb -s /var/tmp/to_scwrl_565122367.seq -o /var/tmp/from_scwrl_565122367.pdb > /var/tmp/scwrl_565122367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_565122367.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_172659439.pdb -s /var/tmp/to_scwrl_172659439.seq -o /var/tmp/from_scwrl_172659439.pdb > /var/tmp/scwrl_172659439.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_172659439.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1213854531.pdb -s /var/tmp/to_scwrl_1213854531.seq -o /var/tmp/from_scwrl_1213854531.pdb > /var/tmp/scwrl_1213854531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1213854531.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_615314323.pdb -s /var/tmp/to_scwrl_615314323.seq -o /var/tmp/from_scwrl_615314323.pdb > /var/tmp/scwrl_615314323.log Error: Couldn't open file /var/tmp/from_scwrl_615314323.pdb or /var/tmp/from_scwrl_615314323.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_615314323_b.pdb or decoys//var/tmp/from_scwrl_615314323_b.pdb.gz for input Trying /var/tmp/from_scwrl_615314323_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_615314323_b.pdb or /var/tmp/from_scwrl_615314323_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_615314323_a.pdb or decoys//var/tmp/from_scwrl_615314323_a.pdb.gz for input Trying /var/tmp/from_scwrl_615314323_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_615314323_a.pdb or /var/tmp/from_scwrl_615314323_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_615314323.pdb or /var/tmp/from_scwrl_615314323_b.pdb or /var/tmp/from_scwrl_615314323_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1237103851.pdb -s /var/tmp/to_scwrl_1237103851.seq -o /var/tmp/from_scwrl_1237103851.pdb > /var/tmp/scwrl_1237103851.log Error: Couldn't open file /var/tmp/from_scwrl_1237103851.pdb or /var/tmp/from_scwrl_1237103851.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1237103851_b.pdb or decoys//var/tmp/from_scwrl_1237103851_b.pdb.gz for input Trying /var/tmp/from_scwrl_1237103851_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1237103851_b.pdb or /var/tmp/from_scwrl_1237103851_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1237103851_a.pdb or decoys//var/tmp/from_scwrl_1237103851_a.pdb.gz for input Trying /var/tmp/from_scwrl_1237103851_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1237103851_a.pdb or /var/tmp/from_scwrl_1237103851_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1237103851.pdb or /var/tmp/from_scwrl_1237103851_b.pdb or /var/tmp/from_scwrl_1237103851_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_177399728.pdb -s /var/tmp/to_scwrl_177399728.seq -o /var/tmp/from_scwrl_177399728.pdb > /var/tmp/scwrl_177399728.log Error: Couldn't open file /var/tmp/from_scwrl_177399728.pdb or /var/tmp/from_scwrl_177399728.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_177399728_b.pdb or decoys//var/tmp/from_scwrl_177399728_b.pdb.gz for input Trying /var/tmp/from_scwrl_177399728_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_177399728_b.pdb or /var/tmp/from_scwrl_177399728_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_177399728_a.pdb or decoys//var/tmp/from_scwrl_177399728_a.pdb.gz for input Trying /var/tmp/from_scwrl_177399728_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_177399728_a.pdb or /var/tmp/from_scwrl_177399728_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_177399728.pdb or /var/tmp/from_scwrl_177399728_b.pdb or /var/tmp/from_scwrl_177399728_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1214849126.pdb -s /var/tmp/to_scwrl_1214849126.seq -o /var/tmp/from_scwrl_1214849126.pdb > /var/tmp/scwrl_1214849126.log Error: Couldn't open file /var/tmp/from_scwrl_1214849126.pdb or /var/tmp/from_scwrl_1214849126.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1214849126_b.pdb or decoys//var/tmp/from_scwrl_1214849126_b.pdb.gz for input Trying /var/tmp/from_scwrl_1214849126_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1214849126_b.pdb or /var/tmp/from_scwrl_1214849126_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1214849126_a.pdb or decoys//var/tmp/from_scwrl_1214849126_a.pdb.gz for input Trying /var/tmp/from_scwrl_1214849126_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1214849126_a.pdb or /var/tmp/from_scwrl_1214849126_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1214849126.pdb or /var/tmp/from_scwrl_1214849126_b.pdb or /var/tmp/from_scwrl_1214849126_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_852570733.pdb -s /var/tmp/to_scwrl_852570733.seq -o /var/tmp/from_scwrl_852570733.pdb > /var/tmp/scwrl_852570733.log Error: Couldn't open file /var/tmp/from_scwrl_852570733.pdb or /var/tmp/from_scwrl_852570733.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_852570733_b.pdb or decoys//var/tmp/from_scwrl_852570733_b.pdb.gz for input Trying /var/tmp/from_scwrl_852570733_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_852570733_b.pdb or /var/tmp/from_scwrl_852570733_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_852570733_a.pdb or decoys//var/tmp/from_scwrl_852570733_a.pdb.gz for input Trying /var/tmp/from_scwrl_852570733_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_852570733_a.pdb or /var/tmp/from_scwrl_852570733_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_852570733.pdb or /var/tmp/from_scwrl_852570733_b.pdb or /var/tmp/from_scwrl_852570733_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_146313188.pdb -s /var/tmp/to_scwrl_146313188.seq -o /var/tmp/from_scwrl_146313188.pdb > /var/tmp/scwrl_146313188.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_146313188.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_540578104.pdb -s /var/tmp/to_scwrl_540578104.seq -o /var/tmp/from_scwrl_540578104.pdb > /var/tmp/scwrl_540578104.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_540578104.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_646768030.pdb -s /var/tmp/to_scwrl_646768030.seq -o /var/tmp/from_scwrl_646768030.pdb > /var/tmp/scwrl_646768030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_646768030.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_133464596.pdb -s /var/tmp/to_scwrl_133464596.seq -o /var/tmp/from_scwrl_133464596.pdb > /var/tmp/scwrl_133464596.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_133464596.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_877247750.pdb -s /var/tmp/to_scwrl_877247750.seq -o /var/tmp/from_scwrl_877247750.pdb > /var/tmp/scwrl_877247750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_877247750.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_623173899.pdb -s /var/tmp/to_scwrl_623173899.seq -o /var/tmp/from_scwrl_623173899.pdb > /var/tmp/scwrl_623173899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623173899.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1323034995.pdb -s /var/tmp/to_scwrl_1323034995.seq -o /var/tmp/from_scwrl_1323034995.pdb > /var/tmp/scwrl_1323034995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1323034995.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1756334877.pdb -s /var/tmp/to_scwrl_1756334877.seq -o /var/tmp/from_scwrl_1756334877.pdb > /var/tmp/scwrl_1756334877.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1756334877.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_725143363.pdb -s /var/tmp/to_scwrl_725143363.seq -o /var/tmp/from_scwrl_725143363.pdb > /var/tmp/scwrl_725143363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_725143363.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1435278163.pdb -s /var/tmp/to_scwrl_1435278163.seq -o /var/tmp/from_scwrl_1435278163.pdb > /var/tmp/scwrl_1435278163.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1435278163.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_449245985.pdb -s /var/tmp/to_scwrl_449245985.seq -o /var/tmp/from_scwrl_449245985.pdb > /var/tmp/scwrl_449245985.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_449245985.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 166 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_315698167.pdb -s /var/tmp/to_scwrl_315698167.seq -o /var/tmp/from_scwrl_315698167.pdb > /var/tmp/scwrl_315698167.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_315698167.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1961487296.pdb -s /var/tmp/to_scwrl_1961487296.seq -o /var/tmp/from_scwrl_1961487296.pdb > /var/tmp/scwrl_1961487296.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1961487296.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 158 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1131562164.pdb -s /var/tmp/to_scwrl_1131562164.seq -o /var/tmp/from_scwrl_1131562164.pdb > /var/tmp/scwrl_1131562164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1131562164.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 160 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_986476588.pdb -s /var/tmp/to_scwrl_986476588.seq -o /var/tmp/from_scwrl_986476588.pdb > /var/tmp/scwrl_986476588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_986476588.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_810308234.pdb -s /var/tmp/to_scwrl_810308234.seq -o /var/tmp/from_scwrl_810308234.pdb > /var/tmp/scwrl_810308234.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_810308234.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.0000000e+00 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE1_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1261437700.pdb -s /var/tmp/to_scwrl_1261437700.seq -o /var/tmp/from_scwrl_1261437700.pdb > /var/tmp/scwrl_1261437700.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1261437700.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1176939438.pdb -s /var/tmp/to_scwrl_1176939438.seq -o /var/tmp/from_scwrl_1176939438.pdb > /var/tmp/scwrl_1176939438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1176939438.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1497843067.pdb -s /var/tmp/to_scwrl_1497843067.seq -o /var/tmp/from_scwrl_1497843067.pdb > /var/tmp/scwrl_1497843067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1497843067.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_447201739.pdb -s /var/tmp/to_scwrl_447201739.seq -o /var/tmp/from_scwrl_447201739.pdb > /var/tmp/scwrl_447201739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_447201739.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_999608594.pdb -s /var/tmp/to_scwrl_999608594.seq -o /var/tmp/from_scwrl_999608594.pdb > /var/tmp/scwrl_999608594.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999608594.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 406, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 408, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 410, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 412, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 526, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 528, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 530, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 532, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 718, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 720, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 722, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz Skipped atom 724, because occupancy 1.000 <= existing 1.000 in servers/FORTE2_AL2.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_256027048.pdb -s /var/tmp/to_scwrl_256027048.seq -o /var/tmp/from_scwrl_256027048.pdb > /var/tmp/scwrl_256027048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_256027048.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1482701072.pdb -s /var/tmp/to_scwrl_1482701072.seq -o /var/tmp/from_scwrl_1482701072.pdb > /var/tmp/scwrl_1482701072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1482701072.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1564730961.pdb -s /var/tmp/to_scwrl_1564730961.seq -o /var/tmp/from_scwrl_1564730961.pdb > /var/tmp/scwrl_1564730961.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1564730961.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_428686487.pdb -s /var/tmp/to_scwrl_428686487.seq -o /var/tmp/from_scwrl_428686487.pdb > /var/tmp/scwrl_428686487.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_428686487.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 192 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_549071958.pdb -s /var/tmp/to_scwrl_549071958.seq -o /var/tmp/from_scwrl_549071958.pdb > /var/tmp/scwrl_549071958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_549071958.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_32561637.pdb -s /var/tmp/to_scwrl_32561637.seq -o /var/tmp/from_scwrl_32561637.pdb > /var/tmp/scwrl_32561637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_32561637.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1665790339.pdb -s /var/tmp/to_scwrl_1665790339.seq -o /var/tmp/from_scwrl_1665790339.pdb > /var/tmp/scwrl_1665790339.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1665790339.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_726471686.pdb -s /var/tmp/to_scwrl_726471686.seq -o /var/tmp/from_scwrl_726471686.pdb > /var/tmp/scwrl_726471686.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_726471686.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1247410763.pdb -s /var/tmp/to_scwrl_1247410763.seq -o /var/tmp/from_scwrl_1247410763.pdb > /var/tmp/scwrl_1247410763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1247410763.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_370877425.pdb -s /var/tmp/to_scwrl_370877425.seq -o /var/tmp/from_scwrl_370877425.pdb > /var/tmp/scwrl_370877425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_370877425.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_872784874.pdb -s /var/tmp/to_scwrl_872784874.seq -o /var/tmp/from_scwrl_872784874.pdb > /var/tmp/scwrl_872784874.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_872784874.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1787988867.pdb -s /var/tmp/to_scwrl_1787988867.seq -o /var/tmp/from_scwrl_1787988867.pdb > /var/tmp/scwrl_1787988867.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787988867.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1017645455.pdb -s /var/tmp/to_scwrl_1017645455.seq -o /var/tmp/from_scwrl_1017645455.pdb > /var/tmp/scwrl_1017645455.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1017645455.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 187 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1006249470.pdb -s /var/tmp/to_scwrl_1006249470.seq -o /var/tmp/from_scwrl_1006249470.pdb > /var/tmp/scwrl_1006249470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1006249470.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_517752971.pdb -s /var/tmp/to_scwrl_517752971.seq -o /var/tmp/from_scwrl_517752971.pdb > /var/tmp/scwrl_517752971.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_517752971.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1640819353.pdb -s /var/tmp/to_scwrl_1640819353.seq -o /var/tmp/from_scwrl_1640819353.pdb > /var/tmp/scwrl_1640819353.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1640819353.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_181800818.pdb -s /var/tmp/to_scwrl_181800818.seq -o /var/tmp/from_scwrl_181800818.pdb > /var/tmp/scwrl_181800818.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_181800818.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_126604201.pdb -s /var/tmp/to_scwrl_126604201.seq -o /var/tmp/from_scwrl_126604201.pdb > /var/tmp/scwrl_126604201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126604201.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_218479070.pdb -s /var/tmp/to_scwrl_218479070.seq -o /var/tmp/from_scwrl_218479070.pdb > /var/tmp/scwrl_218479070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_218479070.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1617078981.pdb -s /var/tmp/to_scwrl_1617078981.seq -o /var/tmp/from_scwrl_1617078981.pdb > /var/tmp/scwrl_1617078981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1617078981.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_575850186.pdb -s /var/tmp/to_scwrl_575850186.seq -o /var/tmp/from_scwrl_575850186.pdb > /var/tmp/scwrl_575850186.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_575850186.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_534177237.pdb -s /var/tmp/to_scwrl_534177237.seq -o /var/tmp/from_scwrl_534177237.pdb > /var/tmp/scwrl_534177237.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_534177237.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1431082630.pdb -s /var/tmp/to_scwrl_1431082630.seq -o /var/tmp/from_scwrl_1431082630.pdb > /var/tmp/scwrl_1431082630.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1431082630.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1707412351.pdb -s /var/tmp/to_scwrl_1707412351.seq -o /var/tmp/from_scwrl_1707412351.pdb > /var/tmp/scwrl_1707412351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1707412351.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1520653824.pdb -s /var/tmp/to_scwrl_1520653824.seq -o /var/tmp/from_scwrl_1520653824.pdb > /var/tmp/scwrl_1520653824.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1520653824.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_93907217.pdb -s /var/tmp/to_scwrl_93907217.seq -o /var/tmp/from_scwrl_93907217.pdb > /var/tmp/scwrl_93907217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_93907217.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_821366405.pdb -s /var/tmp/to_scwrl_821366405.seq -o /var/tmp/from_scwrl_821366405.pdb > /var/tmp/scwrl_821366405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_821366405.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_550109616.pdb -s /var/tmp/to_scwrl_550109616.seq -o /var/tmp/from_scwrl_550109616.pdb > /var/tmp/scwrl_550109616.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_550109616.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1591750284.pdb -s /var/tmp/to_scwrl_1591750284.seq -o /var/tmp/from_scwrl_1591750284.pdb > /var/tmp/scwrl_1591750284.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1591750284.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1268568143.pdb -s /var/tmp/to_scwrl_1268568143.seq -o /var/tmp/from_scwrl_1268568143.pdb > /var/tmp/scwrl_1268568143.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268568143.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1549718210.pdb -s /var/tmp/to_scwrl_1549718210.seq -o /var/tmp/from_scwrl_1549718210.pdb > /var/tmp/scwrl_1549718210.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1549718210.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 167 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1847777333.pdb -s /var/tmp/to_scwrl_1847777333.seq -o /var/tmp/from_scwrl_1847777333.pdb > /var/tmp/scwrl_1847777333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1847777333.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_603785570.pdb -s /var/tmp/to_scwrl_603785570.seq -o /var/tmp/from_scwrl_603785570.pdb > /var/tmp/scwrl_603785570.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_603785570.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_966965525.pdb -s /var/tmp/to_scwrl_966965525.seq -o /var/tmp/from_scwrl_966965525.pdb > /var/tmp/scwrl_966965525.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_966965525.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_128980173.pdb -s /var/tmp/to_scwrl_128980173.seq -o /var/tmp/from_scwrl_128980173.pdb > /var/tmp/scwrl_128980173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_128980173.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1152857527.pdb -s /var/tmp/to_scwrl_1152857527.seq -o /var/tmp/from_scwrl_1152857527.pdb > /var/tmp/scwrl_1152857527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1152857527.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_999527162.pdb -s /var/tmp/to_scwrl_999527162.seq -o /var/tmp/from_scwrl_999527162.pdb > /var/tmp/scwrl_999527162.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999527162.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1794770512.pdb -s /var/tmp/to_scwrl_1794770512.seq -o /var/tmp/from_scwrl_1794770512.pdb > /var/tmp/scwrl_1794770512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1794770512.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1879329213.pdb -s /var/tmp/to_scwrl_1879329213.seq -o /var/tmp/from_scwrl_1879329213.pdb > /var/tmp/scwrl_1879329213.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1879329213.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_99454278.pdb -s /var/tmp/to_scwrl_99454278.seq -o /var/tmp/from_scwrl_99454278.pdb > /var/tmp/scwrl_99454278.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_99454278.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_18164290.pdb -s /var/tmp/to_scwrl_18164290.seq -o /var/tmp/from_scwrl_18164290.pdb > /var/tmp/scwrl_18164290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_18164290.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_604630440.pdb -s /var/tmp/to_scwrl_604630440.seq -o /var/tmp/from_scwrl_604630440.pdb > /var/tmp/scwrl_604630440.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_604630440.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1887443145.pdb -s /var/tmp/to_scwrl_1887443145.seq -o /var/tmp/from_scwrl_1887443145.pdb > /var/tmp/scwrl_1887443145.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1887443145.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1035809745.pdb -s /var/tmp/to_scwrl_1035809745.seq -o /var/tmp/from_scwrl_1035809745.pdb > /var/tmp/scwrl_1035809745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035809745.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1610879910.pdb -s /var/tmp/to_scwrl_1610879910.seq -o /var/tmp/from_scwrl_1610879910.pdb > /var/tmp/scwrl_1610879910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1610879910.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 198 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_257712469.pdb -s /var/tmp/to_scwrl_257712469.seq -o /var/tmp/from_scwrl_257712469.pdb > /var/tmp/scwrl_257712469.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_257712469.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_529145452.pdb -s /var/tmp/to_scwrl_529145452.seq -o /var/tmp/from_scwrl_529145452.pdb > /var/tmp/scwrl_529145452.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529145452.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1792680728.pdb -s /var/tmp/to_scwrl_1792680728.seq -o /var/tmp/from_scwrl_1792680728.pdb > /var/tmp/scwrl_1792680728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1792680728.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_384316670.pdb -s /var/tmp/to_scwrl_384316670.seq -o /var/tmp/from_scwrl_384316670.pdb > /var/tmp/scwrl_384316670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_384316670.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 179 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_747624522.pdb -s /var/tmp/to_scwrl_747624522.seq -o /var/tmp/from_scwrl_747624522.pdb > /var/tmp/scwrl_747624522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_747624522.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 199 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1262276063.pdb -s /var/tmp/to_scwrl_1262276063.seq -o /var/tmp/from_scwrl_1262276063.pdb > /var/tmp/scwrl_1262276063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1262276063.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 173 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_960166857.pdb -s /var/tmp/to_scwrl_960166857.seq -o /var/tmp/from_scwrl_960166857.pdb > /var/tmp/scwrl_960166857.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_960166857.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 190 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1281801758.pdb -s /var/tmp/to_scwrl_1281801758.seq -o /var/tmp/from_scwrl_1281801758.pdb > /var/tmp/scwrl_1281801758.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281801758.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_545875047.pdb -s /var/tmp/to_scwrl_545875047.seq -o /var/tmp/from_scwrl_545875047.pdb > /var/tmp/scwrl_545875047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_545875047.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_520095561.pdb -s /var/tmp/to_scwrl_520095561.seq -o /var/tmp/from_scwrl_520095561.pdb > /var/tmp/scwrl_520095561.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_520095561.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_654971937.pdb -s /var/tmp/to_scwrl_654971937.seq -o /var/tmp/from_scwrl_654971937.pdb > /var/tmp/scwrl_654971937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_654971937.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_639782265.pdb -s /var/tmp/to_scwrl_639782265.seq -o /var/tmp/from_scwrl_639782265.pdb > /var/tmp/scwrl_639782265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_639782265.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1341461965.pdb -s /var/tmp/to_scwrl_1341461965.seq -o /var/tmp/from_scwrl_1341461965.pdb > /var/tmp/scwrl_1341461965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1341461965.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1205081552.pdb -s /var/tmp/to_scwrl_1205081552.seq -o /var/tmp/from_scwrl_1205081552.pdb > /var/tmp/scwrl_1205081552.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1205081552.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_84048902.pdb -s /var/tmp/to_scwrl_84048902.seq -o /var/tmp/from_scwrl_84048902.pdb > /var/tmp/scwrl_84048902.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_84048902.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_462546462.pdb -s /var/tmp/to_scwrl_462546462.seq -o /var/tmp/from_scwrl_462546462.pdb > /var/tmp/scwrl_462546462.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_462546462.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_607316116.pdb -s /var/tmp/to_scwrl_607316116.seq -o /var/tmp/from_scwrl_607316116.pdb > /var/tmp/scwrl_607316116.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_607316116.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1931826235.pdb -s /var/tmp/to_scwrl_1931826235.seq -o /var/tmp/from_scwrl_1931826235.pdb > /var/tmp/scwrl_1931826235.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1931826235.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1066332032.pdb -s /var/tmp/to_scwrl_1066332032.seq -o /var/tmp/from_scwrl_1066332032.pdb > /var/tmp/scwrl_1066332032.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1066332032.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # Found a chain break before 36 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1574281640.pdb -s /var/tmp/to_scwrl_1574281640.seq -o /var/tmp/from_scwrl_1574281640.pdb > /var/tmp/scwrl_1574281640.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1574281640.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2060806409.pdb -s /var/tmp/to_scwrl_2060806409.seq -o /var/tmp/from_scwrl_2060806409.pdb > /var/tmp/scwrl_2060806409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2060806409.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 175 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_71705912.pdb -s /var/tmp/to_scwrl_71705912.seq -o /var/tmp/from_scwrl_71705912.pdb > /var/tmp/scwrl_71705912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_71705912.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_426325155.pdb -s /var/tmp/to_scwrl_426325155.seq -o /var/tmp/from_scwrl_426325155.pdb > /var/tmp/scwrl_426325155.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_426325155.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1708093274.pdb -s /var/tmp/to_scwrl_1708093274.seq -o /var/tmp/from_scwrl_1708093274.pdb > /var/tmp/scwrl_1708093274.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1708093274.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1951035125.pdb -s /var/tmp/to_scwrl_1951035125.seq -o /var/tmp/from_scwrl_1951035125.pdb > /var/tmp/scwrl_1951035125.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1951035125.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_525779433.pdb -s /var/tmp/to_scwrl_525779433.seq -o /var/tmp/from_scwrl_525779433.pdb > /var/tmp/scwrl_525779433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_525779433.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1726257565.pdb -s /var/tmp/to_scwrl_1726257565.seq -o /var/tmp/from_scwrl_1726257565.pdb > /var/tmp/scwrl_1726257565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1726257565.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_408181919.pdb -s /var/tmp/to_scwrl_408181919.seq -o /var/tmp/from_scwrl_408181919.pdb > /var/tmp/scwrl_408181919.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408181919.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_265738932.pdb -s /var/tmp/to_scwrl_265738932.seq -o /var/tmp/from_scwrl_265738932.pdb > /var/tmp/scwrl_265738932.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_265738932.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_614583663.pdb -s /var/tmp/to_scwrl_614583663.seq -o /var/tmp/from_scwrl_614583663.pdb > /var/tmp/scwrl_614583663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_614583663.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2019061829.pdb -s /var/tmp/to_scwrl_2019061829.seq -o /var/tmp/from_scwrl_2019061829.pdb > /var/tmp/scwrl_2019061829.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2019061829.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_523451401.pdb -s /var/tmp/to_scwrl_523451401.seq -o /var/tmp/from_scwrl_523451401.pdb > /var/tmp/scwrl_523451401.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_523451401.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1143729114.pdb -s /var/tmp/to_scwrl_1143729114.seq -o /var/tmp/from_scwrl_1143729114.pdb > /var/tmp/scwrl_1143729114.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1143729114.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1664258910.pdb -s /var/tmp/to_scwrl_1664258910.seq -o /var/tmp/from_scwrl_1664258910.pdb > /var/tmp/scwrl_1664258910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1664258910.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_907768072.pdb -s /var/tmp/to_scwrl_907768072.seq -o /var/tmp/from_scwrl_907768072.pdb > /var/tmp/scwrl_907768072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_907768072.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1891353636.pdb -s /var/tmp/to_scwrl_1891353636.seq -o /var/tmp/from_scwrl_1891353636.pdb > /var/tmp/scwrl_1891353636.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891353636.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_779051327.pdb -s /var/tmp/to_scwrl_779051327.seq -o /var/tmp/from_scwrl_779051327.pdb > /var/tmp/scwrl_779051327.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_779051327.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1867934928.pdb -s /var/tmp/to_scwrl_1867934928.seq -o /var/tmp/from_scwrl_1867934928.pdb > /var/tmp/scwrl_1867934928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1867934928.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1025671749.pdb -s /var/tmp/to_scwrl_1025671749.seq -o /var/tmp/from_scwrl_1025671749.pdb > /var/tmp/scwrl_1025671749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1025671749.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1324926374.pdb -s /var/tmp/to_scwrl_1324926374.seq -o /var/tmp/from_scwrl_1324926374.pdb > /var/tmp/scwrl_1324926374.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1324926374.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 133 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_240546842.pdb -s /var/tmp/to_scwrl_240546842.seq -o /var/tmp/from_scwrl_240546842.pdb > /var/tmp/scwrl_240546842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_240546842.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1680643685.pdb -s /var/tmp/to_scwrl_1680643685.seq -o /var/tmp/from_scwrl_1680643685.pdb > /var/tmp/scwrl_1680643685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1680643685.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1964708639.pdb -s /var/tmp/to_scwrl_1964708639.seq -o /var/tmp/from_scwrl_1964708639.pdb > /var/tmp/scwrl_1964708639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1964708639.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1582008807.pdb -s /var/tmp/to_scwrl_1582008807.seq -o /var/tmp/from_scwrl_1582008807.pdb > /var/tmp/scwrl_1582008807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1582008807.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_738241591.pdb -s /var/tmp/to_scwrl_738241591.seq -o /var/tmp/from_scwrl_738241591.pdb > /var/tmp/scwrl_738241591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738241591.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2048757541.pdb -s /var/tmp/to_scwrl_2048757541.seq -o /var/tmp/from_scwrl_2048757541.pdb > /var/tmp/scwrl_2048757541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2048757541.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2044555269.pdb -s /var/tmp/to_scwrl_2044555269.seq -o /var/tmp/from_scwrl_2044555269.pdb > /var/tmp/scwrl_2044555269.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2044555269.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1345557707.pdb -s /var/tmp/to_scwrl_1345557707.seq -o /var/tmp/from_scwrl_1345557707.pdb > /var/tmp/scwrl_1345557707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1345557707.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1833100130.pdb -s /var/tmp/to_scwrl_1833100130.seq -o /var/tmp/from_scwrl_1833100130.pdb > /var/tmp/scwrl_1833100130.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1833100130.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_963403655.pdb -s /var/tmp/to_scwrl_963403655.seq -o /var/tmp/from_scwrl_963403655.pdb > /var/tmp/scwrl_963403655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_963403655.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_772355701.pdb -s /var/tmp/to_scwrl_772355701.seq -o /var/tmp/from_scwrl_772355701.pdb > /var/tmp/scwrl_772355701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_772355701.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1746422892.pdb -s /var/tmp/to_scwrl_1746422892.seq -o /var/tmp/from_scwrl_1746422892.pdb > /var/tmp/scwrl_1746422892.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1746422892.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1035109567.pdb -s /var/tmp/to_scwrl_1035109567.seq -o /var/tmp/from_scwrl_1035109567.pdb > /var/tmp/scwrl_1035109567.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035109567.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 207 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1198680856.pdb -s /var/tmp/to_scwrl_1198680856.seq -o /var/tmp/from_scwrl_1198680856.pdb > /var/tmp/scwrl_1198680856.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1198680856.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1307032519.pdb -s /var/tmp/to_scwrl_1307032519.seq -o /var/tmp/from_scwrl_1307032519.pdb > /var/tmp/scwrl_1307032519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307032519.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_838661046.pdb -s /var/tmp/to_scwrl_838661046.seq -o /var/tmp/from_scwrl_838661046.pdb > /var/tmp/scwrl_838661046.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_838661046.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 211 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1724460289.pdb -s /var/tmp/to_scwrl_1724460289.seq -o /var/tmp/from_scwrl_1724460289.pdb > /var/tmp/scwrl_1724460289.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1724460289.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 149 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_885806438.pdb -s /var/tmp/to_scwrl_885806438.seq -o /var/tmp/from_scwrl_885806438.pdb > /var/tmp/scwrl_885806438.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885806438.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1246842964.pdb -s /var/tmp/to_scwrl_1246842964.seq -o /var/tmp/from_scwrl_1246842964.pdb > /var/tmp/scwrl_1246842964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246842964.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 205 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1990199221.pdb -s /var/tmp/to_scwrl_1990199221.seq -o /var/tmp/from_scwrl_1990199221.pdb > /var/tmp/scwrl_1990199221.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990199221.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1500390101.pdb -s /var/tmp/to_scwrl_1500390101.seq -o /var/tmp/from_scwrl_1500390101.pdb > /var/tmp/scwrl_1500390101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1500390101.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1118421146.pdb -s /var/tmp/to_scwrl_1118421146.seq -o /var/tmp/from_scwrl_1118421146.pdb > /var/tmp/scwrl_1118421146.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118421146.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_366166976.pdb -s /var/tmp/to_scwrl_366166976.seq -o /var/tmp/from_scwrl_366166976.pdb > /var/tmp/scwrl_366166976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_366166976.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_496635569.pdb -s /var/tmp/to_scwrl_496635569.seq -o /var/tmp/from_scwrl_496635569.pdb > /var/tmp/scwrl_496635569.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_496635569.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_635196410.pdb -s /var/tmp/to_scwrl_635196410.seq -o /var/tmp/from_scwrl_635196410.pdb > /var/tmp/scwrl_635196410.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_635196410.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1273935047.pdb -s /var/tmp/to_scwrl_1273935047.seq -o /var/tmp/from_scwrl_1273935047.pdb > /var/tmp/scwrl_1273935047.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273935047.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_240505559.pdb -s /var/tmp/to_scwrl_240505559.seq -o /var/tmp/from_scwrl_240505559.pdb > /var/tmp/scwrl_240505559.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_240505559.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1414247737.pdb -s /var/tmp/to_scwrl_1414247737.seq -o /var/tmp/from_scwrl_1414247737.pdb > /var/tmp/scwrl_1414247737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1414247737.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_994386329.pdb -s /var/tmp/to_scwrl_994386329.seq -o /var/tmp/from_scwrl_994386329.pdb > /var/tmp/scwrl_994386329.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994386329.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1266177307.pdb -s /var/tmp/to_scwrl_1266177307.seq -o /var/tmp/from_scwrl_1266177307.pdb > /var/tmp/scwrl_1266177307.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1266177307.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_591690465.pdb -s /var/tmp/to_scwrl_591690465.seq -o /var/tmp/from_scwrl_591690465.pdb > /var/tmp/scwrl_591690465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_591690465.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1234933170.pdb -s /var/tmp/to_scwrl_1234933170.seq -o /var/tmp/from_scwrl_1234933170.pdb > /var/tmp/scwrl_1234933170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1234933170.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_799337346.pdb -s /var/tmp/to_scwrl_799337346.seq -o /var/tmp/from_scwrl_799337346.pdb > /var/tmp/scwrl_799337346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_799337346.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_408915457.pdb -s /var/tmp/to_scwrl_408915457.seq -o /var/tmp/from_scwrl_408915457.pdb > /var/tmp/scwrl_408915457.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_408915457.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_669458331.pdb -s /var/tmp/to_scwrl_669458331.seq -o /var/tmp/from_scwrl_669458331.pdb > /var/tmp/scwrl_669458331.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_669458331.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1537578936.pdb -s /var/tmp/to_scwrl_1537578936.seq -o /var/tmp/from_scwrl_1537578936.pdb > /var/tmp/scwrl_1537578936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537578936.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_310189351.pdb -s /var/tmp/to_scwrl_310189351.seq -o /var/tmp/from_scwrl_310189351.pdb > /var/tmp/scwrl_310189351.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_310189351.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_566529953.pdb -s /var/tmp/to_scwrl_566529953.seq -o /var/tmp/from_scwrl_566529953.pdb > /var/tmp/scwrl_566529953.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_566529953.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_735652997.pdb -s /var/tmp/to_scwrl_735652997.seq -o /var/tmp/from_scwrl_735652997.pdb > /var/tmp/scwrl_735652997.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_735652997.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2143289481.pdb -s /var/tmp/to_scwrl_2143289481.seq -o /var/tmp/from_scwrl_2143289481.pdb > /var/tmp/scwrl_2143289481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2143289481.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1529933607.pdb -s /var/tmp/to_scwrl_1529933607.seq -o /var/tmp/from_scwrl_1529933607.pdb > /var/tmp/scwrl_1529933607.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1529933607.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 155 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1508008698.pdb -s /var/tmp/to_scwrl_1508008698.seq -o /var/tmp/from_scwrl_1508008698.pdb > /var/tmp/scwrl_1508008698.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1508008698.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1742228726.pdb -s /var/tmp/to_scwrl_1742228726.seq -o /var/tmp/from_scwrl_1742228726.pdb > /var/tmp/scwrl_1742228726.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1742228726.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 162 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_417559528.pdb -s /var/tmp/to_scwrl_417559528.seq -o /var/tmp/from_scwrl_417559528.pdb > /var/tmp/scwrl_417559528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_417559528.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_559205908.pdb -s /var/tmp/to_scwrl_559205908.seq -o /var/tmp/from_scwrl_559205908.pdb > /var/tmp/scwrl_559205908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559205908.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_901777600.pdb -s /var/tmp/to_scwrl_901777600.seq -o /var/tmp/from_scwrl_901777600.pdb > /var/tmp/scwrl_901777600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901777600.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1256220573.pdb -s /var/tmp/to_scwrl_1256220573.seq -o /var/tmp/from_scwrl_1256220573.pdb > /var/tmp/scwrl_1256220573.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1256220573.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 154 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_136182550.pdb -s /var/tmp/to_scwrl_136182550.seq -o /var/tmp/from_scwrl_136182550.pdb > /var/tmp/scwrl_136182550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_136182550.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 151 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1787584037.pdb -s /var/tmp/to_scwrl_1787584037.seq -o /var/tmp/from_scwrl_1787584037.pdb > /var/tmp/scwrl_1787584037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787584037.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_355579891.pdb -s /var/tmp/to_scwrl_355579891.seq -o /var/tmp/from_scwrl_355579891.pdb > /var/tmp/scwrl_355579891.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355579891.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2126381772.pdb -s /var/tmp/to_scwrl_2126381772.seq -o /var/tmp/from_scwrl_2126381772.pdb > /var/tmp/scwrl_2126381772.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2126381772.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 165 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1140490491.pdb -s /var/tmp/to_scwrl_1140490491.seq -o /var/tmp/from_scwrl_1140490491.pdb > /var/tmp/scwrl_1140490491.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1140490491.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1474001037.pdb -s /var/tmp/to_scwrl_1474001037.seq -o /var/tmp/from_scwrl_1474001037.pdb > /var/tmp/scwrl_1474001037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474001037.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 201 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_345065101.pdb -s /var/tmp/to_scwrl_345065101.seq -o /var/tmp/from_scwrl_345065101.pdb > /var/tmp/scwrl_345065101.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_345065101.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1637126061.pdb -s /var/tmp/to_scwrl_1637126061.seq -o /var/tmp/from_scwrl_1637126061.pdb > /var/tmp/scwrl_1637126061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1637126061.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2109197447.pdb -s /var/tmp/to_scwrl_2109197447.seq -o /var/tmp/from_scwrl_2109197447.pdb > /var/tmp/scwrl_2109197447.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2109197447.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1619000148.pdb -s /var/tmp/to_scwrl_1619000148.seq -o /var/tmp/from_scwrl_1619000148.pdb > /var/tmp/scwrl_1619000148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1619000148.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1877631620.pdb -s /var/tmp/to_scwrl_1877631620.seq -o /var/tmp/from_scwrl_1877631620.pdb > /var/tmp/scwrl_1877631620.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877631620.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1375961537.pdb -s /var/tmp/to_scwrl_1375961537.seq -o /var/tmp/from_scwrl_1375961537.pdb > /var/tmp/scwrl_1375961537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1375961537.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_465902830.pdb -s /var/tmp/to_scwrl_465902830.seq -o /var/tmp/from_scwrl_465902830.pdb > /var/tmp/scwrl_465902830.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_465902830.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_996325281.pdb -s /var/tmp/to_scwrl_996325281.seq -o /var/tmp/from_scwrl_996325281.pdb > /var/tmp/scwrl_996325281.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996325281.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1967652002.pdb -s /var/tmp/to_scwrl_1967652002.seq -o /var/tmp/from_scwrl_1967652002.pdb > /var/tmp/scwrl_1967652002.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1967652002.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1700836000.pdb -s /var/tmp/to_scwrl_1700836000.seq -o /var/tmp/from_scwrl_1700836000.pdb > /var/tmp/scwrl_1700836000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1700836000.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1795662626.pdb -s /var/tmp/to_scwrl_1795662626.seq -o /var/tmp/from_scwrl_1795662626.pdb > /var/tmp/scwrl_1795662626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795662626.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_229083812.pdb -s /var/tmp/to_scwrl_229083812.seq -o /var/tmp/from_scwrl_229083812.pdb > /var/tmp/scwrl_229083812.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_229083812.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 216 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_222810684.pdb -s /var/tmp/to_scwrl_222810684.seq -o /var/tmp/from_scwrl_222810684.pdb > /var/tmp/scwrl_222810684.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_222810684.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1185757915.pdb -s /var/tmp/to_scwrl_1185757915.seq -o /var/tmp/from_scwrl_1185757915.pdb > /var/tmp/scwrl_1185757915.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1185757915.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 217 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_539273164.pdb -s /var/tmp/to_scwrl_539273164.seq -o /var/tmp/from_scwrl_539273164.pdb > /var/tmp/scwrl_539273164.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_539273164.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 208 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_789340637.pdb -s /var/tmp/to_scwrl_789340637.seq -o /var/tmp/from_scwrl_789340637.pdb > /var/tmp/scwrl_789340637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_789340637.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 212 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1921410913.pdb -s /var/tmp/to_scwrl_1921410913.seq -o /var/tmp/from_scwrl_1921410913.pdb > /var/tmp/scwrl_1921410913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1921410913.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_535078998.pdb -s /var/tmp/to_scwrl_535078998.seq -o /var/tmp/from_scwrl_535078998.pdb > /var/tmp/scwrl_535078998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_535078998.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_171790598.pdb -s /var/tmp/to_scwrl_171790598.seq -o /var/tmp/from_scwrl_171790598.pdb > /var/tmp/scwrl_171790598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_171790598.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 Skipped atom 142, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 144, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 146, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 148, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 390, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 392, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 394, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 396, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 510, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 512, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 514, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 516, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 702, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 704, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 706, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz Skipped atom 708, because occupancy 1.000 <= existing 1.000 in servers/forecast-s_AL1.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1281935964.pdb -s /var/tmp/to_scwrl_1281935964.seq -o /var/tmp/from_scwrl_1281935964.pdb > /var/tmp/scwrl_1281935964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1281935964.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_129824078.pdb -s /var/tmp/to_scwrl_129824078.seq -o /var/tmp/from_scwrl_129824078.pdb > /var/tmp/scwrl_129824078.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_129824078.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_589350126.pdb -s /var/tmp/to_scwrl_589350126.seq -o /var/tmp/from_scwrl_589350126.pdb > /var/tmp/scwrl_589350126.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_589350126.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1841141872.pdb -s /var/tmp/to_scwrl_1841141872.seq -o /var/tmp/from_scwrl_1841141872.pdb > /var/tmp/scwrl_1841141872.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1841141872.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1031601678.pdb -s /var/tmp/to_scwrl_1031601678.seq -o /var/tmp/from_scwrl_1031601678.pdb > /var/tmp/scwrl_1031601678.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031601678.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1845570699.pdb -s /var/tmp/to_scwrl_1845570699.seq -o /var/tmp/from_scwrl_1845570699.pdb > /var/tmp/scwrl_1845570699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1845570699.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1977324422.pdb -s /var/tmp/to_scwrl_1977324422.seq -o /var/tmp/from_scwrl_1977324422.pdb > /var/tmp/scwrl_1977324422.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1977324422.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_671702068.pdb -s /var/tmp/to_scwrl_671702068.seq -o /var/tmp/from_scwrl_671702068.pdb > /var/tmp/scwrl_671702068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_671702068.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_53666943.pdb -s /var/tmp/to_scwrl_53666943.seq -o /var/tmp/from_scwrl_53666943.pdb > /var/tmp/scwrl_53666943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_53666943.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 Skipped atom 126, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 128, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 130, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 132, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 374, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 376, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 378, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 380, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 494, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 496, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 498, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 500, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 686, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 688, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 690, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz Skipped atom 692, because occupancy 1.000 <= existing 1.000 in servers/gtg_AL5.pdb.gz # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1956222547.pdb -s /var/tmp/to_scwrl_1956222547.seq -o /var/tmp/from_scwrl_1956222547.pdb > /var/tmp/scwrl_1956222547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1956222547.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1812192560.pdb -s /var/tmp/to_scwrl_1812192560.seq -o /var/tmp/from_scwrl_1812192560.pdb > /var/tmp/scwrl_1812192560.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812192560.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1527667980.pdb -s /var/tmp/to_scwrl_1527667980.seq -o /var/tmp/from_scwrl_1527667980.pdb > /var/tmp/scwrl_1527667980.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1527667980.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 206 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_153804001.pdb -s /var/tmp/to_scwrl_153804001.seq -o /var/tmp/from_scwrl_153804001.pdb > /var/tmp/scwrl_153804001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_153804001.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 188 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1301834974.pdb -s /var/tmp/to_scwrl_1301834974.seq -o /var/tmp/from_scwrl_1301834974.pdb > /var/tmp/scwrl_1301834974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1301834974.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 189 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1489381780.pdb -s /var/tmp/to_scwrl_1489381780.seq -o /var/tmp/from_scwrl_1489381780.pdb > /var/tmp/scwrl_1489381780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1489381780.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)L128.O and (T0323)T129.N only 0.000 apart, marking (T0323)T129.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1772804149.pdb -s /var/tmp/to_scwrl_1772804149.seq -o /var/tmp/from_scwrl_1772804149.pdb > /var/tmp/scwrl_1772804149.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1772804149.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1031982948.pdb -s /var/tmp/to_scwrl_1031982948.seq -o /var/tmp/from_scwrl_1031982948.pdb > /var/tmp/scwrl_1031982948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1031982948.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 218 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_717859672.pdb -s /var/tmp/to_scwrl_717859672.seq -o /var/tmp/from_scwrl_717859672.pdb > /var/tmp/scwrl_717859672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_717859672.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)G218.O and (T0323)N219.N only 0.000 apart, marking (T0323)N219.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_91223332.pdb -s /var/tmp/to_scwrl_91223332.seq -o /var/tmp/from_scwrl_91223332.pdb > /var/tmp/scwrl_91223332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_91223332.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 WARNING: atoms too close: (T0323)K36.O and (T0323)P37.N only 0.000 apart, marking (T0323)P37.N as missing WARNING: atoms too close: (T0323)V68.O and (T0323)G69.N only 0.000 apart, marking (T0323)G69.N as missing WARNING: atoms too close: (T0323)D83.O and (T0323)E84.N only 0.000 apart, marking (T0323)E84.N as missing # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2028308228.pdb -s /var/tmp/to_scwrl_2028308228.seq -o /var/tmp/from_scwrl_2028308228.pdb > /var/tmp/scwrl_2028308228.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2028308228.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_538028027.pdb -s /var/tmp/to_scwrl_538028027.seq -o /var/tmp/from_scwrl_538028027.pdb > /var/tmp/scwrl_538028027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_538028027.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1792059332.pdb -s /var/tmp/to_scwrl_1792059332.seq -o /var/tmp/from_scwrl_1792059332.pdb > /var/tmp/scwrl_1792059332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1792059332.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1676487207.pdb -s /var/tmp/to_scwrl_1676487207.seq -o /var/tmp/from_scwrl_1676487207.pdb > /var/tmp/scwrl_1676487207.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1676487207.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_767111840.pdb -s /var/tmp/to_scwrl_767111840.seq -o /var/tmp/from_scwrl_767111840.pdb > /var/tmp/scwrl_767111840.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_767111840.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # Found a chain break before 209 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_2014870016.pdb -s /var/tmp/to_scwrl_2014870016.seq -o /var/tmp/from_scwrl_2014870016.pdb > /var/tmp/scwrl_2014870016.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2014870016.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # Found a chain break before 178 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_714761476.pdb -s /var/tmp/to_scwrl_714761476.seq -o /var/tmp/from_scwrl_714761476.pdb > /var/tmp/scwrl_714761476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_714761476.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # Found a chain break before 202 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1306385003.pdb -s /var/tmp/to_scwrl_1306385003.seq -o /var/tmp/from_scwrl_1306385003.pdb > /var/tmp/scwrl_1306385003.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1306385003.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # Found a chain break before 219 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_656727007.pdb -s /var/tmp/to_scwrl_656727007.seq -o /var/tmp/from_scwrl_656727007.pdb > /var/tmp/scwrl_656727007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_656727007.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # Found a chain break before 213 # copying to AlignedFragments data structure # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_488688742.pdb -s /var/tmp/to_scwrl_488688742.seq -o /var/tmp/from_scwrl_488688742.pdb > /var/tmp/scwrl_488688742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_488688742.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1841464001.pdb -s /var/tmp/to_scwrl_1841464001.seq -o /var/tmp/from_scwrl_1841464001.pdb > /var/tmp/scwrl_1841464001.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1841464001.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_828517605.pdb -s /var/tmp/to_scwrl_828517605.seq -o /var/tmp/from_scwrl_828517605.pdb > /var/tmp/scwrl_828517605.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_828517605.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1770624706.pdb -s /var/tmp/to_scwrl_1770624706.seq -o /var/tmp/from_scwrl_1770624706.pdb > /var/tmp/scwrl_1770624706.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1770624706.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1971288079.pdb -s /var/tmp/to_scwrl_1971288079.seq -o /var/tmp/from_scwrl_1971288079.pdb > /var/tmp/scwrl_1971288079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1971288079.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1417867730.pdb -s /var/tmp/to_scwrl_1417867730.seq -o /var/tmp/from_scwrl_1417867730.pdb > /var/tmp/scwrl_1417867730.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1417867730.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1464282931.pdb -s /var/tmp/to_scwrl_1464282931.seq -o /var/tmp/from_scwrl_1464282931.pdb > /var/tmp/scwrl_1464282931.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1464282931.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0323 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_855406110.pdb -s /var/tmp/to_scwrl_855406110.seq -o /var/tmp/from_scwrl_855406110.pdb > /var/tmp/scwrl_855406110.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_855406110.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 220 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 199 ; scwrl3 -i /var/tmp/to_scwrl_1115954782.pdb -s /var/tmp/to_scwrl_1115954782.seq -o /var/tmp/from_scwrl_1115954782.pdb > /var/tmp/scwrl_1115954782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1115954782.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 45.2861 sec, elapsed time= 528.057 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_2.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -54.5587 shub_TS1 costs 0 real_cost = -45.5516 panther2_TS1-scwrl costs 0 real_cost = -139.97 panther2_TS1 costs 0 real_cost = -125.461 nFOLD_TS5-scwrl costs 0 real_cost = 10.1882 nFOLD_TS5 costs 0 real_cost = 98.4144 nFOLD_TS4-scwrl costs 0 real_cost = -145.498 nFOLD_TS4 costs 0 real_cost = -45.7457 nFOLD_TS3-scwrl costs 0 real_cost = 2.71916 nFOLD_TS3 costs 0 real_cost = 99.6654 nFOLD_TS2-scwrl costs 0 real_cost = -74.2865 nFOLD_TS2 costs 0 real_cost = 21.7939 nFOLD_TS1-scwrl costs 0 real_cost = 37.2631 nFOLD_TS1 costs 0 real_cost = 127.975 mGen-3D_TS1-scwrl costs 0 real_cost = -96.1651 mGen-3D_TS1 costs 0 real_cost = -12.81 keasar-server_TS5-scwrl costs 0 real_cost = -103.295 keasar-server_TS5 costs 0 real_cost = -102.204 keasar-server_TS4-scwrl costs 0 real_cost = -106.258 keasar-server_TS4 costs 0 real_cost = -98.4074 keasar-server_TS3-scwrl costs 0 real_cost = -98.5102 keasar-server_TS3 costs 0 real_cost = -93.0766 keasar-server_TS2-scwrl costs 0 real_cost = -99.5907 keasar-server_TS2 costs 0 real_cost = -101.336 keasar-server_TS1-scwrl costs 0 real_cost = -138.805 keasar-server_TS1 costs 0 real_cost = -128.934 karypis.srv_TS4-scwrl costs 0 real_cost = -78.5625 karypis.srv_TS4 costs 0 real_cost = -78.5625 karypis.srv_TS3-scwrl costs 0 real_cost = -50.3281 karypis.srv_TS3 costs 0 real_cost = -50.3281 karypis.srv_TS2-scwrl costs 0 real_cost = -47.4529 karypis.srv_TS2 costs 0 real_cost = -52.3141 karypis.srv_TS1-scwrl costs 0 real_cost = -117.559 karypis.srv_TS1 costs 0 real_cost = -120.959 karypis.srv.4_TS5-scwrl costs 0 real_cost = 209.059 karypis.srv.4_TS5 costs 0 real_cost = 209.059 karypis.srv.4_TS4-scwrl costs 0 real_cost = 278.424 karypis.srv.4_TS4 costs 0 real_cost = 282.543 karypis.srv.4_TS3-scwrl costs 0 real_cost = 221.338 karypis.srv.4_TS3 costs 0 real_cost = 221.338 karypis.srv.4_TS2-scwrl costs 0 real_cost = 246.395 karypis.srv.4_TS2 costs 0 real_cost = 246.395 karypis.srv.4_TS1-scwrl costs 0 real_cost = 245.233 karypis.srv.4_TS1 costs 0 real_cost = 245.243 karypis.srv.2_TS5-scwrl costs 0 real_cost = -189.804 karypis.srv.2_TS5 costs 0 real_cost = -189.804 karypis.srv.2_TS4-scwrl costs 0 real_cost = -194.755 karypis.srv.2_TS4 costs 0 real_cost = -194.755 karypis.srv.2_TS3-scwrl costs 0 real_cost = -52.7439 karypis.srv.2_TS3 costs 0 real_cost = -52.6575 karypis.srv.2_TS2-scwrl costs 0 real_cost = -192.623 karypis.srv.2_TS2 costs 0 real_cost = -192.623 karypis.srv.2_TS1-scwrl costs 0 real_cost = -193.404 karypis.srv.2_TS1 costs 0 real_cost = -193.404 gtg_AL5-scwrl costs 0 real_cost = -0.0115865 gtg_AL5 costs 0 real_cost = 122.272 gtg_AL4-scwrl costs 0 real_cost = -114.173 gtg_AL4 costs 0 real_cost = 17.0227 gtg_AL3-scwrl costs 0 real_cost = 2.0302 gtg_AL3 costs 0 real_cost = 125.822 gtg_AL2-scwrl costs 0 real_cost = 21.4278 gtg_AL2 costs 0 real_cost = 130.399 gtg_AL1-scwrl costs 0 real_cost = -6.00128 gtg_AL1 costs 0 real_cost = 120.561 forecast-s_AL5-scwrl costs 0 real_cost = 183.726 forecast-s_AL5 costs 0 real_cost = 295.347 forecast-s_AL4-scwrl costs 0 real_cost = -28.2044 forecast-s_AL4 costs 0 real_cost = 60.6176 forecast-s_AL3-scwrl costs 0 real_cost = 36.2677 forecast-s_AL3 costs 0 real_cost = 146.84 forecast-s_AL2-scwrl costs 0 real_cost = 21.9464 forecast-s_AL2 costs 0 real_cost = 156.437 forecast-s_AL1-scwrl costs 0 real_cost = 4.60426 forecast-s_AL1 costs 0 real_cost = 132.908 beautshotbase_TS1-scwrl costs 0 real_cost = -144.846 beautshotbase_TS1 costs 0 real_cost = -145.936 beautshot_TS1-scwrl costs 0 real_cost = -86.7829 beautshot_TS1 costs 0 real_cost = -84.8608 Zhang-Server_TS5-scwrl costs 0 real_cost = -197.552 Zhang-Server_TS5 costs 0 real_cost = -188.913 Zhang-Server_TS4-scwrl costs 0 real_cost = -231.831 Zhang-Server_TS4 costs 0 real_cost = -217.469 Zhang-Server_TS3-scwrl costs 0 real_cost = -242.394 Zhang-Server_TS3 costs 0 real_cost = -229.903 Zhang-Server_TS2-scwrl costs 0 real_cost = -178.401 Zhang-Server_TS2 costs 0 real_cost = -173.584 Zhang-Server_TS1-scwrl costs 0 real_cost = -205.129 Zhang-Server_TS1 costs 0 real_cost = -198.52 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = 19.9343 UNI-EID_sfst_AL5 costs 0 real_cost = 127.996 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = 57.981 UNI-EID_sfst_AL4 costs 0 real_cost = 156.607 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -116.006 UNI-EID_sfst_AL3 costs 0 real_cost = 15.083 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -78.7503 UNI-EID_sfst_AL2 costs 0 real_cost = 37.4366 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -129.846 UNI-EID_sfst_AL1 costs 0 real_cost = -2.5473 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -187.668 UNI-EID_expm_TS1 costs 0 real_cost = -67.4749 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -30.7959 UNI-EID_bnmx_TS5 costs 0 real_cost = 100.694 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 13.1545 UNI-EID_bnmx_TS4 costs 0 real_cost = 139.407 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -116.006 UNI-EID_bnmx_TS3 costs 0 real_cost = 15.083 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -82.9275 UNI-EID_bnmx_TS2 costs 0 real_cost = 40.6749 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -129.846 UNI-EID_bnmx_TS1 costs 0 real_cost = -2.5473 SPARKS2_TS5-scwrl costs 0 real_cost = -79.1531 SPARKS2_TS5 costs 0 real_cost = -67.554 SPARKS2_TS4-scwrl costs 0 real_cost = -76.5143 SPARKS2_TS4 costs 0 real_cost = -79.7801 SPARKS2_TS3-scwrl costs 0 real_cost = -153.015 SPARKS2_TS3 costs 0 real_cost = -147.981 SPARKS2_TS2-scwrl costs 0 real_cost = -200.43 SPARKS2_TS2 costs 0 real_cost = -197.512 SPARKS2_TS1-scwrl costs 0 real_cost = -188.697 SPARKS2_TS1 costs 0 real_cost = -177.703 SP4_TS5-scwrl costs 0 real_cost = -151.229 SP4_TS5 costs 0 real_cost = -143.249 SP4_TS4-scwrl costs 0 real_cost = -55.3312 SP4_TS4 costs 0 real_cost = -50.1102 SP4_TS3-scwrl costs 0 real_cost = -157.524 SP4_TS3 costs 0 real_cost = -151.313 SP4_TS2-scwrl costs 0 real_cost = -197.926 SP4_TS2 costs 0 real_cost = -189.087 SP4_TS1-scwrl costs 0 real_cost = -191.053 SP4_TS1 costs 0 real_cost = -182.97 SP3_TS5-scwrl costs 0 real_cost = -71.7061 SP3_TS5 costs 0 real_cost = -67.1301 SP3_TS4-scwrl costs 0 real_cost = -102.046 SP3_TS4 costs 0 real_cost = -96.9726 SP3_TS3-scwrl costs 0 real_cost = -153.908 SP3_TS3 costs 0 real_cost = -149.813 SP3_TS2-scwrl costs 0 real_cost = -197.926 SP3_TS2 costs 0 real_cost = -189.087 SP3_TS1-scwrl costs 0 real_cost = -191.053 SP3_TS1 costs 0 real_cost = -182.97 SAM_T06_server_TS5-scwrl costs 0 real_cost = 58.3161 SAM_T06_server_TS5 costs 0 real_cost = 17.2747 SAM_T06_server_TS4-scwrl costs 0 real_cost = -82.4997 SAM_T06_server_TS4 costs 0 real_cost = -95.5149 SAM_T06_server_TS3-scwrl costs 0 real_cost = -137.06 SAM_T06_server_TS3 costs 0 real_cost = -150.482 SAM_T06_server_TS2-scwrl costs 0 real_cost = -20.1942 SAM_T06_server_TS2 costs 0 real_cost = -37.7372 SAM_T06_server_TS1-scwrl costs 0 real_cost = -54.7272 SAM_T06_server_TS1 costs 0 real_cost = -53.8782 SAM-T99_AL5-scwrl costs 0 real_cost = -135.961 SAM-T99_AL5 costs 0 real_cost = -8.74572 SAM-T99_AL4-scwrl costs 0 real_cost = -128.835 SAM-T99_AL4 costs 0 real_cost = -3.72902 SAM-T99_AL3-scwrl costs 0 real_cost = -121.606 SAM-T99_AL3 costs 0 real_cost = 11.883 SAM-T99_AL2-scwrl costs 0 real_cost = -5.55199 SAM-T99_AL2 costs 0 real_cost = 121.968 SAM-T99_AL1-scwrl costs 0 real_cost = 4.55762 SAM-T99_AL1 costs 0 real_cost = 128.397 SAM-T02_AL5-scwrl costs 0 real_cost = -79.0747 SAM-T02_AL5 costs 0 real_cost = 35.9144 SAM-T02_AL4-scwrl costs 0 real_cost = -71.1158 SAM-T02_AL4 costs 0 real_cost = 39.8308 SAM-T02_AL3-scwrl costs 0 real_cost = -118.89 SAM-T02_AL3 costs 0 real_cost = 6.411 SAM-T02_AL2-scwrl costs 0 real_cost = -75.1215 SAM-T02_AL2 costs 0 real_cost = 36.8015 SAM-T02_AL1-scwrl costs 0 real_cost = -79.7053 SAM-T02_AL1 costs 0 real_cost = 37.7332 ROKKY_TS4-scwrl costs 0 real_cost = -185.147 ROKKY_TS4 costs 0 real_cost = -175.879 ROKKY_TS3-scwrl costs 0 real_cost = -40.7568 ROKKY_TS3 costs 0 real_cost = -36.0051 ROKKY_TS2-scwrl costs 0 real_cost = -31.2655 ROKKY_TS2 costs 0 real_cost = -35.5501 ROKKY_TS1-scwrl costs 0 real_cost = -60.8347 ROKKY_TS1 costs 0 real_cost = -55.8921 ROBETTA_TS5-scwrl costs 0 real_cost = -71.9776 ROBETTA_TS5 costs 0 real_cost = -78.9706 ROBETTA_TS4-scwrl costs 0 real_cost = -93.5597 ROBETTA_TS4 costs 0 real_cost = -93.7201 ROBETTA_TS3-scwrl costs 0 real_cost = -88.7843 ROBETTA_TS3 costs 0 real_cost = -88.1153 ROBETTA_TS2-scwrl costs 0 real_cost = -80.6868 ROBETTA_TS2 costs 0 real_cost = -83.6263 ROBETTA_TS1-scwrl costs 0 real_cost = -65.3643 ROBETTA_TS1 costs 0 real_cost = -62.2656 RAPTOR_TS5-scwrl costs 0 real_cost = -61.0491 RAPTOR_TS5 costs 0 real_cost = -48.1792 RAPTOR_TS4-scwrl costs 0 real_cost = -147.158 RAPTOR_TS4 costs 0 real_cost = -139.732 RAPTOR_TS3-scwrl costs 0 real_cost = -69.9295 RAPTOR_TS3 costs 0 real_cost = -68.6346 RAPTOR_TS2-scwrl costs 0 real_cost = -81.7827 RAPTOR_TS2 costs 0 real_cost = -84.4131 RAPTOR_TS1-scwrl costs 0 real_cost = -189.887 RAPTOR_TS1 costs 0 real_cost = -183.115 RAPTORESS_TS5-scwrl costs 0 real_cost = -37.2979 RAPTORESS_TS5 costs 0 real_cost = -38.2368 RAPTORESS_TS4-scwrl costs 0 real_cost = -144.329 RAPTORESS_TS4 costs 0 real_cost = -134.425 RAPTORESS_TS3-scwrl costs 0 real_cost = -43.2009 RAPTORESS_TS3 costs 0 real_cost = -39.69 RAPTORESS_TS2-scwrl costs 0 real_cost = -53.4605 RAPTORESS_TS2 costs 0 real_cost = -55.3672 RAPTORESS_TS1-scwrl costs 0 real_cost = -175.007 RAPTORESS_TS1 costs 0 real_cost = -170.175 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -186.753 RAPTOR-ACE_TS5 costs 0 real_cost = -173.652 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -153.908 RAPTOR-ACE_TS4 costs 0 real_cost = -149.813 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -188.858 RAPTOR-ACE_TS3 costs 0 real_cost = -176.85 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -117.634 RAPTOR-ACE_TS2 costs 0 real_cost = -120.36 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -147.93 RAPTOR-ACE_TS1 costs 0 real_cost = -137.513 Pmodeller6_TS5-scwrl costs 0 real_cost = -43.3627 Pmodeller6_TS5 costs 0 real_cost = -44.9627 Pmodeller6_TS4-scwrl costs 0 real_cost = -43.3627 Pmodeller6_TS4 costs 0 real_cost = -44.9627 Pmodeller6_TS3-scwrl costs 0 real_cost = -60.1956 Pmodeller6_TS3 costs 0 real_cost = -61.5956 Pmodeller6_TS2-scwrl costs 0 real_cost = -171.513 Pmodeller6_TS2 costs 0 real_cost = -174.513 Pmodeller6_TS1-scwrl costs 0 real_cost = -171.513 Pmodeller6_TS1 costs 0 real_cost = -174.513 Phyre-2_TS5-scwrl costs 0 real_cost = -31.0536 Phyre-2_TS5 costs 0 real_cost = -40.5359 Phyre-2_TS4-scwrl costs 0 real_cost = -44.2536 Phyre-2_TS4 costs 0 real_cost = -53.7359 Phyre-2_TS3-scwrl costs 0 real_cost = -44.2536 Phyre-2_TS3 costs 0 real_cost = -53.7359 Phyre-2_TS2-scwrl costs 0 real_cost = -37.3031 Phyre-2_TS2 costs 0 real_cost = -42.111 Phyre-2_TS1-scwrl costs 0 real_cost = -51.7445 Phyre-2_TS1 costs 0 real_cost = -55.4768 Phyre-1_TS1-scwrl costs 0 real_cost = -131.231 Phyre-1_TS1 costs 0 real_cost = -135.355 Pcons6_TS5-scwrl costs 0 real_cost = -152.322 Pcons6_TS5 costs 0 real_cost = -156.322 Pcons6_TS4-scwrl costs 0 real_cost = -208.78 Pcons6_TS4 costs 0 real_cost = -210.78 Pcons6_TS3-scwrl costs 0 real_cost = -131.717 Pcons6_TS3 costs 0 real_cost = -135.677 Pcons6_TS2-scwrl costs 0 real_cost = -171.513 Pcons6_TS2 costs 0 real_cost = -174.513 Pcons6_TS1-scwrl costs 0 real_cost = -163.658 Pcons6_TS1 costs 0 real_cost = -167.658 PROTINFO_TS5-scwrl costs 0 real_cost = -119.588 PROTINFO_TS5 costs 0 real_cost = -116.24 PROTINFO_TS4-scwrl costs 0 real_cost = -78.9017 PROTINFO_TS4 costs 0 real_cost = -81.156 PROTINFO_TS3-scwrl costs 0 real_cost = -173.692 PROTINFO_TS3 costs 0 real_cost = -168.891 PROTINFO_TS2-scwrl costs 0 real_cost = -95.9449 PROTINFO_TS2 costs 0 real_cost = -101.648 PROTINFO_TS1-scwrl costs 0 real_cost = -172.835 PROTINFO_TS1 costs 0 real_cost = -165.506 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -170.872 PROTINFO-AB_TS5 costs 0 real_cost = -166.099 PROTINFO-AB_TS4-scwrl costs 0 real_cost = -172.27 PROTINFO-AB_TS4 costs 0 real_cost = -159.479 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -164.281 PROTINFO-AB_TS3 costs 0 real_cost = -161.566 PROTINFO-AB_TS2-scwrl costs 0 real_cost = -172.456 PROTINFO-AB_TS2 costs 0 real_cost = -163.555 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -172.97 PROTINFO-AB_TS1 costs 0 real_cost = -166.427 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -153.292 NN_PUT_lab_TS1 costs 0 real_cost = -148.292 MetaTasser_TS5-scwrl costs 0 real_cost = -180.281 MetaTasser_TS5 costs 0 real_cost = -184.072 MetaTasser_TS4-scwrl costs 0 real_cost = -178.767 MetaTasser_TS4 costs 0 real_cost = -167.868 MetaTasser_TS3-scwrl costs 0 real_cost = -184.842 MetaTasser_TS3 costs 0 real_cost = -186.615 MetaTasser_TS2-scwrl costs 0 real_cost = -186.162 MetaTasser_TS2 costs 0 real_cost = -189.368 MetaTasser_TS1-scwrl costs 0 real_cost = -234.412 MetaTasser_TS1 costs 0 real_cost = -228.757 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 186.794 Ma-OPUS-server_TS5 costs 0 real_cost = 189.385 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -53.552 Ma-OPUS-server_TS4 costs 0 real_cost = -41.96 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -189.702 Ma-OPUS-server_TS3 costs 0 real_cost = -177.492 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 164.359 Ma-OPUS-server_TS2 costs 0 real_cost = 157.496 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = -164.289 Ma-OPUS-server_TS1 costs 0 real_cost = -158.552 Ma-OPUS-server2_TS5-scwrl costs 0 real_cost = -75.1299 Ma-OPUS-server2_TS5 costs 0 real_cost = -64.8705 Ma-OPUS-server2_TS4-scwrl costs 0 real_cost = 186.794 Ma-OPUS-server2_TS4 costs 0 real_cost = 189.385 Ma-OPUS-server2_TS3-scwrl costs 0 real_cost = -186.001 Ma-OPUS-server2_TS3 costs 0 real_cost = -176.412 Ma-OPUS-server2_TS2-scwrl costs 0 real_cost = -155.363 Ma-OPUS-server2_TS2 costs 0 real_cost = -155.485 Ma-OPUS-server2_TS1-scwrl costs 0 real_cost = 148.289 Ma-OPUS-server2_TS1 costs 0 real_cost = 147.425 MIG_FROST_AL1-scwrl costs 0 real_cost = -1.53752 MIG_FROST_AL1 costs 0 real_cost = 149.191 LOOPP_TS5-scwrl costs 0 real_cost = -91.3536 LOOPP_TS5 costs 0 real_cost = -86.4923 LOOPP_TS4-scwrl costs 0 real_cost = -75.9517 LOOPP_TS4 costs 0 real_cost = -73.747 LOOPP_TS3-scwrl costs 0 real_cost = -152.685 LOOPP_TS3 costs 0 real_cost = -150.175 LOOPP_TS2-scwrl costs 0 real_cost = -107.464 LOOPP_TS2 costs 0 real_cost = -105.146 LOOPP_TS1-scwrl costs 0 real_cost = -153.292 LOOPP_TS1 costs 0 real_cost = -148.292 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 397.077 Huber-Torda-Server_TS5 costs 0 real_cost = 425.213 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 387.22 Huber-Torda-Server_TS4 costs 0 real_cost = 416.756 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 313.328 Huber-Torda-Server_TS3 costs 0 real_cost = 385.213 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = 401.285 Huber-Torda-Server_TS2 costs 0 real_cost = 439.346 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -112.225 Huber-Torda-Server_TS1 costs 0 real_cost = -21.4022 HHpred3_TS1-scwrl costs 0 real_cost = -192.446 HHpred3_TS1 costs 0 real_cost = -177.885 HHpred2_TS1-scwrl costs 0 real_cost = -192.446 HHpred2_TS1 costs 0 real_cost = -177.885 HHpred1_TS1-scwrl costs 0 real_cost = -195.973 HHpred1_TS1 costs 0 real_cost = -184.091 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -104.537 GeneSilicoMetaServer_TS5 costs 0 real_cost = -100.712 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -54.8566 GeneSilicoMetaServer_TS4 costs 0 real_cost = -55.515 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -144.164 GeneSilicoMetaServer_TS3 costs 0 real_cost = -138.563 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -144.631 GeneSilicoMetaServer_TS2 costs 0 real_cost = -133.994 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -187.451 GeneSilicoMetaServer_TS1 costs 0 real_cost = -180.597 FUNCTION_TS5-scwrl costs 0 real_cost = -169.438 FUNCTION_TS5 costs 0 real_cost = -167.962 FUNCTION_TS4-scwrl costs 0 real_cost = -167.153 FUNCTION_TS4 costs 0 real_cost = -163.346 FUNCTION_TS3-scwrl costs 0 real_cost = -75.1 FUNCTION_TS3 costs 0 real_cost = -73.5685 FUNCTION_TS2-scwrl costs 0 real_cost = -71.4705 FUNCTION_TS2 costs 0 real_cost = -64.6817 FUNCTION_TS1-scwrl costs 0 real_cost = -155.167 FUNCTION_TS1 costs 0 real_cost = -154.96 FUGUE_AL5-scwrl costs 0 real_cost = 12.5252 FUGUE_AL5 costs 0 real_cost = 136.423 FUGUE_AL4-scwrl costs 0 real_cost = 98.4777 FUGUE_AL4 costs 0 real_cost = 185.457 FUGUE_AL3-scwrl costs 0 real_cost = -17.6452 FUGUE_AL3 costs 0 real_cost = 126.18 FUGUE_AL2-scwrl costs 0 real_cost = -19.6495 FUGUE_AL2 costs 0 real_cost = 109.603 FUGUE_AL1-scwrl costs 0 real_cost = -97.0384 FUGUE_AL1 costs 0 real_cost = 27.3734 FUGMOD_TS5-scwrl costs 0 real_cost = -57.1204 FUGMOD_TS5 costs 0 real_cost = -55.1281 FUGMOD_TS4-scwrl costs 0 real_cost = 95.4576 FUGMOD_TS4 costs 0 real_cost = 90.6243 FUGMOD_TS3-scwrl costs 0 real_cost = -35.1436 FUGMOD_TS3 costs 0 real_cost = -33.9511 FUGMOD_TS2-scwrl costs 0 real_cost = -47.0247 FUGMOD_TS2 costs 0 real_cost = -42.5064 FUGMOD_TS1-scwrl costs 0 real_cost = -129.308 FUGMOD_TS1 costs 0 real_cost = -119.496 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 244.717 FPSOLVER-SERVER_TS5 costs 0 real_cost = 250.038 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 212.752 FPSOLVER-SERVER_TS4 costs 0 real_cost = 218.221 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 266.303 FPSOLVER-SERVER_TS3 costs 0 real_cost = 264.054 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 244.118 FPSOLVER-SERVER_TS2 costs 0 real_cost = 243.023 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 247.906 FPSOLVER-SERVER_TS1 costs 0 real_cost = 247.987 FORTE2_AL5-scwrl costs 0 real_cost = -64.9683 FORTE2_AL5 costs 0 real_cost = 59.2724 FORTE2_AL4-scwrl costs 0 real_cost = -85.1887 FORTE2_AL4 costs 0 real_cost = 48.7874 FORTE2_AL3-scwrl costs 0 real_cost = 5.5392 FORTE2_AL3 costs 0 real_cost = 149.237 FORTE2_AL2-scwrl costs 0 real_cost = 20.5496 FORTE2_AL2 costs 0 real_cost = 158.958 FORTE2_AL1-scwrl costs 0 real_cost = -96.3314 FORTE2_AL1 costs 0 real_cost = 48.8596 FORTE1_AL5-scwrl costs 0 real_cost = -85.1887 FORTE1_AL5 costs 0 real_cost = 48.7874 FORTE1_AL4-scwrl costs 0 real_cost = -105.158 FORTE1_AL4 costs 0 real_cost = 11.5529 FORTE1_AL3-scwrl costs 0 real_cost = 5.5392 FORTE1_AL3 costs 0 real_cost = 149.237 FORTE1_AL2-scwrl costs 0 real_cost = 16.4435 FORTE1_AL2 costs 0 real_cost = 157.115 FORTE1_AL1-scwrl costs 0 real_cost = -96.3314 FORTE1_AL1 costs 0 real_cost = 48.8596 FOLDpro_TS5-scwrl costs 0 real_cost = 55.5215 FOLDpro_TS5 costs 0 real_cost = 59.9725 FOLDpro_TS4-scwrl costs 0 real_cost = -30.3167 FOLDpro_TS4 costs 0 real_cost = -31.5449 FOLDpro_TS3-scwrl costs 0 real_cost = -33.3312 FOLDpro_TS3 costs 0 real_cost = -29.7803 FOLDpro_TS2-scwrl costs 0 real_cost = -182.096 FOLDpro_TS2 costs 0 real_cost = -180.882 FOLDpro_TS1-scwrl costs 0 real_cost = -185.619 FOLDpro_TS1 costs 0 real_cost = -189.081 FAMS_TS5-scwrl costs 0 real_cost = -178.062 FAMS_TS5 costs 0 real_cost = -164.348 FAMS_TS4-scwrl costs 0 real_cost = -147.199 FAMS_TS4 costs 0 real_cost = -143.743 FAMS_TS3-scwrl costs 0 real_cost = -137.583 FAMS_TS3 costs 0 real_cost = -133.779 FAMS_TS2-scwrl costs 0 real_cost = -143.75 FAMS_TS2 costs 0 real_cost = -138.079 FAMS_TS1-scwrl costs 0 real_cost = -134.322 FAMS_TS1 costs 0 real_cost = -124.13 FAMSD_TS5-scwrl costs 0 real_cost = -113.207 FAMSD_TS5 costs 0 real_cost = -106.957 FAMSD_TS4-scwrl costs 0 real_cost = -74.7074 FAMSD_TS4 costs 0 real_cost = -62.733 FAMSD_TS3-scwrl costs 0 real_cost = -147.051 FAMSD_TS3 costs 0 real_cost = -146.794 FAMSD_TS2-scwrl costs 0 real_cost = -165.155 FAMSD_TS2 costs 0 real_cost = -163.117 FAMSD_TS1-scwrl costs 0 real_cost = -203.462 FAMSD_TS1 costs 0 real_cost = -188.776 Distill_TS5-scwrl costs 0 real_cost = 423.187 Distill_TS4-scwrl costs 0 real_cost = 425.442 Distill_TS3-scwrl costs 0 real_cost = 418.695 Distill_TS2-scwrl costs 0 real_cost = 403.513 Distill_TS1-scwrl costs 0 real_cost = 403.246 CaspIta-FOX_TS5-scwrl costs 0 real_cost = -160.586 CaspIta-FOX_TS5 costs 0 real_cost = -161.534 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -129.601 CaspIta-FOX_TS4 costs 0 real_cost = -135.912 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -1.78002 CaspIta-FOX_TS3 costs 0 real_cost = -8.87484 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -57.985 CaspIta-FOX_TS2 costs 0 real_cost = -60.9725 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -4.30367 CaspIta-FOX_TS1 costs 0 real_cost = -15.1473 CPHmodels_TS1-scwrl costs 0 real_cost = -95.9861 CPHmodels_TS1 costs 0 real_cost = -87.9782 CIRCLE_TS5-scwrl costs 0 real_cost = -101.921 CIRCLE_TS5 costs 0 real_cost = -94.1131 CIRCLE_TS4-scwrl costs 0 real_cost = -103.27 CIRCLE_TS4 costs 0 real_cost = -91.7586 CIRCLE_TS3-scwrl costs 0 real_cost = -137.583 CIRCLE_TS3 costs 0 real_cost = -133.779 CIRCLE_TS2-scwrl costs 0 real_cost = -147.199 CIRCLE_TS2 costs 0 real_cost = -143.743 CIRCLE_TS1-scwrl costs 0 real_cost = -143.75 CIRCLE_TS1 costs 0 real_cost = -138.079 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -200.139 Bilab-ENABLE_TS5 costs 0 real_cost = -200.098 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -199.695 Bilab-ENABLE_TS4 costs 0 real_cost = -199.654 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -198.572 Bilab-ENABLE_TS3 costs 0 real_cost = -198.529 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -200.007 Bilab-ENABLE_TS2 costs 0 real_cost = -199.966 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -178.391 Bilab-ENABLE_TS1 costs 0 real_cost = -178.391 BayesHH_TS1-scwrl costs 0 real_cost = -200.518 BayesHH_TS1 costs 0 real_cost = -193.247 ABIpro_TS5-scwrl costs 0 real_cost = 83.6314 ABIpro_TS5 costs 0 real_cost = 86.2214 ABIpro_TS4-scwrl costs 0 real_cost = 131.04 ABIpro_TS4 costs 0 real_cost = 131.039 ABIpro_TS3-scwrl costs 0 real_cost = 123.133 ABIpro_TS3 costs 0 real_cost = 123.171 ABIpro_TS2-scwrl costs 0 real_cost = 164.952 ABIpro_TS2 costs 0 real_cost = 164.952 ABIpro_TS1-scwrl costs 0 real_cost = 140.372 ABIpro_TS1 costs 0 real_cost = 141.222 3Dpro_TS5-scwrl costs 0 real_cost = -66.1067 3Dpro_TS5 costs 0 real_cost = -68.1745 3Dpro_TS4-scwrl costs 0 real_cost = -51.7197 3Dpro_TS4 costs 0 real_cost = -47.1893 3Dpro_TS3-scwrl costs 0 real_cost = -149.087 3Dpro_TS3 costs 0 real_cost = -153.341 3Dpro_TS2-scwrl costs 0 real_cost = -197.63 3Dpro_TS2 costs 0 real_cost = -190.887 3Dpro_TS1-scwrl costs 0 real_cost = -180.238 3Dpro_TS1 costs 0 real_cost = -174.906 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -108.052 3D-JIGSAW_TS5 costs 0 real_cost = -104.254 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -108.219 3D-JIGSAW_TS4 costs 0 real_cost = -103.128 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -110.663 3D-JIGSAW_TS3 costs 0 real_cost = -107.568 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -107.107 3D-JIGSAW_TS2 costs 0 real_cost = -110.657 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -108.43 3D-JIGSAW_TS1 costs 0 real_cost = -100.275 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -105.028 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -96.9473 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -81.9427 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -86.4638 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -115.352 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -122.393 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -101.635 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -103.546 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -86.6938 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -93.5231 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -89.3844 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -93.5844 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -123.5 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -127.7 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -99.6917 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -105.801 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -104.889 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -109.089 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -117.596 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -121.796 T0323.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -22.069 T0323.try4-opt2.pdb.gz costs 0 real_cost = -21.7634 T0323.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -16.7331 T0323.try4-opt1.pdb.gz costs 0 real_cost = -19.1007 T0323.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -21.2265 T0323.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = 9.13714 T0323.try3-opt2.pdb.gz costs 0 real_cost = 9.61419 T0323.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = 8.78813 T0323.try3-opt1.pdb.gz costs 0 real_cost = 12.3279 T0323.try3-opt1-scwrl.pdb.gz costs 0 real_cost = 9.335 T0323.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -18.8817 T0323.try2-opt2.pdb.gz costs 0 real_cost = -17.2805 T0323.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -13.335 T0323.try2-opt1.pdb.gz costs 0 real_cost = -18.4452 T0323.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -17.8024 T0323.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -18.0796 T0323.try1-opt2.pdb.gz costs 0 real_cost = -18.1561 T0323.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -15.5126 T0323.try1-opt1.pdb.gz costs 0 real_cost = -12.8214 T0323.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -13.0657 ../model5.ts-submitted costs 0 real_cost = 17.9838 ../model4.ts-submitted costs 0 real_cost = -46.318 ../model3.ts-submitted costs 0 real_cost = 9.61765 ../model2.ts-submitted costs 0 real_cost = -18.1429 ../model1.ts-submitted costs 0 real_cost = -21.8159 align5 costs 0 real_cost = 6.93299 align4 costs 0 real_cost = 46.6924 align3 costs 0 real_cost = -132.819 align2 costs 0 real_cost = -0.614617 align1 costs 0 real_cost = -46.3649 T0323.try1-opt2.pdb costs 0 real_cost = -18.1573 model5-scwrl costs 0 real_cost = 62.5773 model5.ts-submitted costs 0 real_cost = 17.9838 model4-scwrl costs 0 real_cost = -19.4054 model4.ts-submitted costs 0 real_cost = -46.318 model3-scwrl costs 0 real_cost = 7.35404 model3.ts-submitted costs 0 real_cost = 9.61765 model2-scwrl costs 0 real_cost = -15.5217 model2.ts-submitted costs 0 real_cost = -18.1429 model1-scwrl costs 0 real_cost = -19.234 model1.ts-submitted costs 0 real_cost = -21.8159 T0323_2.real.pdb costs 0 real_cost = -720.8 # command:CPU_time= 284.386 sec, elapsed time= 767.703 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_2.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_2.rdb mv -f decoys/evaluate_2.pretty decoys/evaluate_2.pretty.old mv: cannot stat `decoys/evaluate_2.pretty': No such file or directory make: [decoys/evaluate_2.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_2.rdb > decoys/evaluate_2.pretty