Best Alignments for T0323

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1mpgA/T0323-1mpgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mpgA/ 1.1718e-191.31e-77 1mpgA a.96.1.3
1ornA/T0323-1ornA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ornA/ 3.6413e-178.47e-69 a.96.1.1
1muyA/T0323-1muyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1muyA/ 1.1480e-124.80e-55 1mun a.96.1.2
1pu6A/T0323-1pu6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pu6A/ 7.3578e-117.21e-49 a.96.1.5
1yqkA/T0323-1yqkA-t2k-local-adpstyle1.a2m 1yqkA/ 6.9972e-064.76e-32
1rrsA/T0323-1rrsA-t2k-local-adpstyle1.a2m 1rrsA/ 8.9258e-062.11e-31 a.96.1.2
1yqrA/T0323-1yqrA-t2k-local-adpstyle1.a2m 1yqrA/ 9.1995e-062.50e-31

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001