# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ornA 226 3.43e-25 a.96.1.1 87342 1mun 225 1.20e-23 1mun a.96.1.2 18744 2abk 211 2.68e-23 2abk a.96.1.1 18743 1ebmA 317 4.11e-20 1ebmA a.96.1.3,d.129.1.2 18751,41300 1m3qA 317 6.58e-20 a.96.1.3,d.129.1.2 91184,91185 1keaA 221 7.61e-20 a.96.1.2 68491 1mpgA 282 1.50e-19 1mpgA a.96.1.3,d.129.1.2 18747,41296 1pu6A 218 1.37e-14 a.96.1.5 95123 1ngnA 155 8.60e-09 a.96.1.2 85697 1lmzA 187 1.08e-01 a.96.1.4 74037 1zpdA 568 5.92e-01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1y88A 199 7.72e-01 2csbA 519 8.11e-01 1vp8A 201 8.66e-01 1nc5A 373 1.08e+00 a.102.1.6 85548 2tysA 268 1.27e+00 2tysA c.1.2.4 28572 2a1jB 91 1.53e+00 1is2A 661 1.83e+00 a.29.3.2,a.29.3.2,e.6.1.2 71382,71383,71384 1x2iA 75 1.94e+00 1n1bA 549 2.40e+00 a.102.4.1,a.128.1.3 79799,79800 2aynA 404 2.40e+00 1g63A 181 2.65e+00 1g5qA c.34.1.1 60299 1hyeA 313 2.75e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1vgmA 378 2.83e+00 1k3pA 426 3.34e+00 a.103.1.1 77237 1fts 295 3.81e+00 1ng1 a.24.13.1,c.37.1.10 16968,32279 1j8mF 297 3.90e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1tk9A 188 4.69e+00 c.80.1.3 107082 1po5A 476 4.70e+00 a.104.1.1 94963 1j8yF 297 4.83e+00 1ng1 a.24.13.1,c.37.1.10 62747,62748 1jx4A 352 4.84e+00 d.240.1.1,e.8.1.7 90378,90379 1i6lA 328 4.89e+00 c.26.1.1 66041 1d2rA 326 4.90e+00 1d2rB c.26.1.1 31572 1vk3A 615 5.00e+00 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1owcA 427 5.03e+00 a.103.1.1 104039 2aexA 346 5.22e+00 1ebfA 358 5.71e+00 1ebuA c.2.1.3,d.81.1.2 30033,39948 1pvyA 227 6.18e+00 d.115.1.2 95195 2btzA 394 6.31e+00 1snnA 227 6.49e+00 d.115.1.2 105821 1jm6A 407 6.77e+00 a.29.5.1,d.122.1.4 66876,66877 2ebn 289 7.56e+00 2ebn c.1.8.5 28990 1iomA 377 7.86e+00 a.103.1.1 83698 1kfcA 268 8.29e+00 c.1.2.4 77371 1odfA 290 8.30e+00 c.37.1.6 92782 1k4nA 192 8.54e+00 d.32.1.5 72059 1wvqA 167 8.86e+00 1vl8A 267 9.28e+00 c.2.1.2 108733 1jm1A 204 9.89e+00 b.33.1.1 71745 2fsqA 243 1.03e+01 1k2eA 156 1.04e+01 d.113.1.1 72010 1o7jA 327 1.14e+01 c.88.1.1 81140 2a19A 175 1.15e+01 1rdr 461 1.20e+01 1rdr e.8.1.4 43116 1cuk 203 1.27e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1ma3A 253 1.27e+01 c.31.1.5 78883 2czrA 226 1.27e+01 2d2eA 250 1.30e+01 1t56A 216 1.32e+01 a.4.1.9,a.121.1.1 106428,106429 1zu4A 320 1.32e+01 1txgA 335 1.35e+01 1a41 234 1.36e+01 1a41 d.163.1.2 42174 1jx6A 342 1.37e+01 c.93.1.1 67406 1qmpA 130 1.37e+01 1dz3A c.23.1.1 31106 4pgaA 337 1.40e+01 4pgaA c.88.1.1 35565 2bk9A 153 1.46e+01 1xr4A 509 1.49e+01 1kpgA 287 1.51e+01 c.66.1.18 68735 1zwxA 301 1.52e+01 1ryoA 327 1.54e+01 c.94.1.2 98108 1vz6A 393 1.63e+01 d.154.1.2 108949 6gsvA 217 1.63e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1hwxA 501 1.65e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 1gntA 553 1.70e+01 e.26.1.1 70290 1q15A 503 1.77e+01 c.26.2.1,d.153.1.1 95538,95539 1wf3A 301 1.78e+01 1hgxA 183 1.84e+01 1tc1A c.61.1.1 34027 1s95A 333 1.86e+01 d.159.1.3 105375 1tc1A 220 1.87e+01 1tc1A c.61.1.1 34083 1i0lA 221 2.00e+01 c.61.1.1 71096 1e2uA 553 2.05e+01 1e1dA e.26.1.1 43362 1odoA 408 2.08e+01 a.104.1.1 92783 1b4pA 217 2.13e+01 a.45.1.1,c.47.1.5 83158,83159 2f9lA 199 2.16e+01 1iqyA 638 2.24e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 2g3bA 208 2.26e+01 1p2fA 220 2.27e+01 a.4.6.1,c.23.1.1 87720,87721 1go3F 107 2.28e+01 a.60.8.2 65407 1cpt 412 2.34e+01 1cpt a.104.1.1 18968 2fnaA 357 2.40e+01 1wxcB 134 2.41e+01 1siiA 646 2.43e+01 b.30.2.1,d.17.2.1,d.17.2.1 105578,105579,105580 1a8e 329 2.43e+01 1cb6A c.94.1.2 35888 1vhtA 218 2.49e+01 c.37.1.1 100700 1b22A 114 2.50e+01 1b22A a.60.4.1 17969 1dofA 403 2.56e+01 1c3cA a.127.1.1 19429 1w6gA 646 2.70e+01 1yy7A 213 2.71e+01 1obbA 480 2.72e+01 c.2.1.5,d.162.1.2 86760,86761 1wzdA 215 2.74e+01 1rjoA 646 2.75e+01 1vggA 161 2.80e+01 1ywfA 296 2.83e+01 1zwwA 256 2.88e+01 2g64A 140 2.90e+01 1iw0A 215 2.96e+01 a.132.1.1 83720 1vlmA 219 3.01e+01 c.66.1.41 108836 1dz3A 130 3.15e+01 1dz3A c.23.1.1 31105 1j1iA 296 3.16e+01 c.69.1.10 83977 1y8oA 419 3.19e+01 2fnuA 375 3.20e+01 1nw3A 416 3.22e+01 c.66.1.31 86288 1owlA 484 3.32e+01 a.99.1.1,c.28.1.1 93647,93648 1ui8A 638 3.38e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 2bjiA 277 3.39e+01 1ydnA 295 3.45e+01 1b0xA 94 3.46e+01 1b4fA a.60.1.2 17933 1sr9A 644 3.48e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1w1wA 430 3.48e+01 2anxA 146 3.51e+01 1fa0A 537 3.52e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1aisA 182 3.53e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2czdA 208 3.55e+01 1qnf 484 3.57e+01 1qnf a.99.1.1,c.28.1.1 18777,31632 1a2vA 655 3.60e+01 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1lq9A 112 3.60e+01 d.58.4.3 78129 1zzoA 136 3.63e+01 1n81A 186 3.70e+01 a.185.1.1 85388 1wwuA 99 3.72e+01 2bdeA 470 3.75e+01 1b3uA 588 3.79e+01 1b3uA a.118.1.2 19135 1htjF 210 3.80e+01 1htjF a.91.1.1 61254 1s3iA 310 3.81e+01 b.46.1.1,c.65.1.1 98435,98436 1ua7A 422 4.08e+01 b.71.1.1,c.1.8.1 107759,107760 1bag 425 4.14e+01 1bag b.71.1.1,c.1.8.1 27720,28707 2awiA 317 4.18e+01 1vb3A 428 4.24e+01 1dk0A 188 4.37e+01 1b2vA d.35.1.1 38530 2c46A 241 4.49e+01 1bo4A 168 4.50e+01 1bo4A d.108.1.1 40798 1qv1A 195 4.51e+01 a.39.1.5 96347 1wz9A 375 4.51e+01 1r7mA 235 4.55e+01 1qcwA 410 4.63e+01 1gox c.1.4.1 28622 2gnpA 266 4.64e+01 1yc5A 246 4.68e+01 2af4C 333 4.71e+01 1z5zA 271 4.74e+01 1rdfA 267 4.75e+01 c.108.1.3 104884 1fs0G 230 4.83e+01 1fs0G c.49.2.1 59999 1yisA 478 4.83e+01 1dq3A 454 4.86e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1auk 489 4.93e+01 1auk c.76.1.2 35030 1e4yA 214 4.99e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1qh5A 260 4.99e+01 1qh5A d.157.1.2 42057 1pujA 282 5.10e+01 c.37.1.8 88294 1j2rA 199 5.12e+01 c.33.1.3 90788 1gcyA 527 5.16e+01 1jdc b.71.1.1,c.1.8.1 27788,28775 1o17A 345 5.21e+01 a.46.2.1,c.27.1.1 80765,80766 1rvkA 382 5.22e+01 c.1.11.2,d.54.1.1 97928,97929 1vjyA 303 5.23e+01 d.144.1.7 108633 1kbjA 412 5.26e+01 c.1.4.1 72280 1m6yA 301 5.34e+01 a.60.13.1,c.66.1.23 78716,78717 1txuA 273 5.35e+01 a.222.1.1 107439 2c71A 216 5.38e+01 2akoA 251 5.39e+01 1n5uA 585 5.42e+01 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1o4uA 285 5.43e+01 c.1.17.1,d.41.2.1 86624,86625 1el4A 195 5.49e+01 1ej3A a.39.1.5 59453 1u11A 182 5.55e+01 c.23.8.1 107576 1iyhA 198 5.56e+01 a.45.1.1,c.47.1.5 83790,83791 1ydgA 211 5.57e+01 2b5dX 528 5.60e+01 1ui7A 638 5.65e+01 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1x13A 401 5.71e+01 1a4sA 503 5.74e+01 1bpwA c.82.1.1 35361 1x91A 153 5.76e+01 1jf2A 195 5.76e+01 1ej3A a.39.1.5 62930 1vmiA 355 5.82e+01 1tcvA 287 5.88e+01 1qqcA 773 5.98e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1mzgA 146 5.99e+01 d.224.1.1 79696 2c1cA 312 6.00e+01 1x1mA 107 6.04e+01 2bylA 439 6.18e+01 1u24A 337 6.21e+01 1zx4A 192 6.23e+01 1pk5A 248 6.32e+01 a.123.1.1 88139 1qh3A 260 6.33e+01 1qh5A d.157.1.2 42059 1har 216 6.37e+01 1rthA e.8.1.2 43025 1nnsA 326 6.40e+01 c.88.1.1 85910 2aplA 157 6.54e+01 1xizA 159 6.63e+01 1wohA 305 6.68e+01 c.42.1.1 109446 1tqyB 415 6.71e+01 c.95.1.1,c.95.1.1 107247,107248 2bxkA 585 6.76e+01 1kl9A 182 6.89e+01 b.40.4.5 72681 1oivA 191 6.89e+01 c.37.1.8 93076 1j7gA 144 6.91e+01 c.110.1.1 84130 1bkzA 135 6.94e+01 1a3k b.29.1.3 24202 1qopA 268 6.95e+01 2tysA c.1.2.4 28570 1py5A 326 6.95e+01 d.144.1.7 104389 1ajsA 412 6.96e+01 1ajsA c.67.1.1 34276 1sqnA 261 7.02e+01 a.123.1.1 105944 1jlwA 219 7.08e+01 a.45.1.1,c.47.1.5 71741,71742 2cvdA 198 7.09e+01 1n3bA 216 7.11e+01 c.37.1.1 79959 1fj2A 232 7.12e+01 1auoA c.69.1.14 34720 1twiA 434 7.16e+01 b.49.2.3,c.1.6.1 107399,107400 1rqlA 267 7.30e+01 c.108.1.3 97750 1z00B 84 7.30e+01 1wu4A 396 7.32e+01 2bynA 227 7.33e+01 2f9dA 125 7.41e+01 1i9sA 210 7.42e+01 1i9sA c.45.1.1 62099 1m55A 197 7.42e+01 d.89.1.3 74469 1ct9A 553 7.46e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1qr0A 228 7.48e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1wj5A 120 7.58e+01 1wnaA 131 7.63e+01 1urjA 1136 7.64e+01 2bp1A 360 7.64e+01 1n7zA 334 7.73e+01 b.127.1.1 85380 1ab8A 220 7.73e+01 1azsA d.58.29.1 39414 1iooA 196 7.74e+01 d.124.1.1 71250 1qghA 156 7.88e+01 1qghA a.25.1.1 16728 1l1eA 287 7.88e+01 c.66.1.18 73454 1tc6A 236 7.90e+01 d.122.1.1 106756 1r7aA 504 7.91e+01 b.71.1.1,c.1.8.1 97192,97193 1avk 638 7.91e+01 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24410,38047,38048 1rcwA 231 7.94e+01 a.132.1.4 97299 2c5uA 375 7.97e+01 1xwiA 322 8.01e+01 1kr4A 125 8.03e+01 d.58.5.2 72889 1fezA 256 8.05e+01 1fezA c.108.1.3 43343 1e19A 314 8.05e+01 1b7bA c.73.1.1 34967 2bg5A 324 8.34e+01 1qlmA 316 8.43e+01 1qlmA d.147.1.1 41765 1j99A 293 8.50e+01 c.37.1.5 71618 1us5A 314 8.51e+01 c.94.1.1 99856 1y14A 187 8.55e+01 1kid 203 8.59e+01 1derA c.8.5.1 30771 1lbu 213 8.61e+01 1lbu a.20.1.1,d.65.1.1 16416,39549 1edt 271 8.64e+01 2ebn c.1.8.5 28993 1u9yA 284 8.73e+01 1no1A 126 8.75e+01 a.179.1.1 85913 1sr7A 259 8.77e+01 a.123.1.1 105957 1wvfA 520 8.79e+01 2g9iA 249 8.90e+01 1tufA 434 8.96e+01 b.49.2.3,c.1.6.1 107335,107336