# List of top-scoring protein chains for T0322.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fs2A 151 2.41e-16 1psuA 140 2.68e-16 d.38.1.5 88285 2cy9A 140 1.41e-15 1wluA 136 4.17e-14 1zkiA 133 9.45e-14 1yliA 153 7.50e-11 2b6eA 146 4.08e-10 1o0iA 138 4.52e-10 d.38.1.5 86532 1vpmA 169 4.19e-09 1ixlA 131 4.68e-09 d.38.1.5 90717 1q4uA 151 4.92e-09 d.38.1.5 95828 1vh5A 148 9.73e-09 d.38.1.5 100642 1sbkA 144 1.13e-08 d.38.1.5 98791 1vh9A 149 2.96e-08 d.38.1.5 100653 1y7uA 174 8.35e-08 2b3nA 159 1.14e-03 1s5uA 138 2.91e-03 d.38.1.1 98573 1njkA 156 2.99e-03 d.38.1.1 85818 1yocA 147 5.48e-03 2cyeA 133 6.30e-03 1sh8A 154 1.32e-02 d.38.1.5 105549 1q6wA 161 3.00e-02 d.38.1.4 96000 1c8uA 285 7.02e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 1z54A 132 8.90e-02 1u1zA 168 1.38e-01 d.38.1.6 107602 2av9A 147 3.69e-01 1t82A 155 5.08e-01 d.38.1.5 106639 1oysA 245 1.10e+00 d.14.1.4,d.101.1.1 93758,93759 1oypA 245 1.36e+00 d.14.1.4,d.101.1.1 93734,93735 2cwzA 141 2.40e+00 1z6bA 154 2.73e+00 2gf6A 135 3.51e+00 1iq6A 134 4.37e+00 d.38.1.4 76755 1udsA 255 6.17e+00 d.14.1.4,d.101.1.1 99219,99220 1wk2A 121 7.90e+00 1vckA 115 1.08e+01 1udoA 255 1.18e+01 d.14.1.4,d.101.1.1 99215,99216 1udnA 255 1.20e+01 d.14.1.4,d.101.1.1 99213,99214 1zlyA 203 1.38e+01 1meoA 209 1.40e+01 c.65.1.1 79035 1mejA 223 1.48e+01 c.65.1.1 79029 2f86B 143 1.51e+01 1udqA 255 1.53e+01 d.14.1.4,d.101.1.1 99217,99218 1fts 295 1.71e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 1prtF 98 1.72e+01 1prtF b.40.2.1 25140 1bcpF 99 1.73e+01 1prtF b.40.2.1 25142 1xtoA 311 1.74e+01 2f57A 317 1.75e+01 1xfrA 128 1.77e+01 1dqeA 137 1.83e+01 1dqeA a.39.2.1 17388 1bykA 255 1.84e+01 1bykA c.93.1.1 35706 2fjyA 142 1.87e+01 1nu5A 370 2.31e+01 c.1.11.2,d.54.1.1 92183,92184 1umgA 362 2.49e+01 d.280.1.1 107956 1xrtA 467 2.72e+01 2aw4O 117 2.84e+01 2conA 79 2.94e+01 1x7gA 261 3.02e+01 1w4zA 281 3.11e+01 2cofA 107 3.12e+01 1uocA 289 3.26e+01 c.55.3.9 99686 2br2A 275 3.40e+01 1w63M 423 3.41e+01 i.23.1.1 109204 2b44A 133 3.68e+01 2b0pA 134 3.68e+01 1b7gO 340 3.91e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1te5A 257 4.01e+01 d.153.1.1 106795 1r4vA 171 4.03e+01 a.197.1.1 97049 1qgeE 97 4.04e+01 1cvl 1fo0B 112 4.32e+01 1kb5B b.1.1.1 20631 1namB 113 4.34e+01 b.1.1.1 85489 1x25A 128 5.14e+01 2fftA 84 5.43e+01 1o9yA 84 5.61e+01 b.139.1.1 92692 1q7fA 286 5.72e+01 b.68.9.1 96036 1wquA 114 5.94e+01 1mvqA 236 5.99e+01 b.29.1.1 91473 1nx8A 273 6.00e+01 b.82.2.8 86374 1qdmA 478 6.10e+01 1smrA a.64.1.2,b.50.1.2 18141,26838 2ffsA 157 6.26e+01 1qwyA 291 6.39e+01 b.84.3.2 96509 2gacA 151 6.57e+01 1apyA d.153.1.5 42012 1vynA 143 6.70e+01 b.34.14.1 108904 1zxfA 155 6.94e+01 2c30A 321 7.12e+01 1dciA 275 7.49e+01 1dciA c.14.1.3 30918 1y9qA 192 7.59e+01 1pyaB 229 7.96e+01 1pyaB 1vrbA 342 8.00e+01 1f3uA 118 8.45e+01 1f3uA b.65.1.1 27521 1wieA 96 9.00e+01