# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fs2A 151 2.10e-19 1psuA 140 4.64e-19 d.38.1.5 88285 1wluA 136 2.03e-16 1j1yA 136 2.37e-16 d.38.1.5 90776 1zkiA 133 2.59e-16 1o0iA 138 1.45e-13 d.38.1.5 86532 2b6eA 146 1.90e-13 1vh5A 148 1.07e-12 d.38.1.5 100642 1q4uA 151 4.71e-12 d.38.1.5 95828 1ixlA 131 6.46e-12 d.38.1.5 90717 1yliA 153 1.02e-11 1vpmA 169 1.69e-10 2gvhA 288 3.08e-09 1yocA 147 2.59e-07 2cyeA 133 1.55e-06 1sh8A 154 4.30e-06 d.38.1.5 105549 1t82A 155 2.24e-05 d.38.1.5 106639 1s5uA 138 2.55e-05 d.38.1.1 98573 2av9A 147 2.62e-05 1njkA 156 2.89e-05 d.38.1.1 85818 1z54A 132 3.29e-05 2b3nA 159 1.58e-04 1u1zA 168 3.31e-04 d.38.1.6 107602 2cwzA 141 9.93e-04 1c8uA 285 1.67e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 1z6bA 154 3.23e-03 1iq6A 134 5.67e-03 d.38.1.4 76755 2gf6A 135 7.04e-03 2bi0A 337 1.27e-02 2aliA 158 1.90e-02 1lo7A 141 2.49e-02 d.38.1.1 74144 1bvqA 141 2.69e-02 1bvqA d.38.1.1 38542 1tbuA 118 7.39e-02 2essA 248 1.70e-01 1yycA 174 1.48e+00 1mkaA 171 1.83e+00 1mkaA d.38.1.2 38543 2b59A 187 4.72e+00 1w9hA 427 5.15e+00 2bm3A 166 5.66e+00 1eqkA 102 5.86e+00 1eqkA d.17.1.2 37998 1f3uA 118 6.60e+00 1f3uA b.65.1.1 27521 2f57A 317 6.80e+00 2c5uA 375 7.67e+00 1l0wA 580 8.16e+00 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1s68A 249 8.78e+00 d.142.2.4 98591 1fm4A 159 9.43e+00 1bv1 d.129.3.1 76186 1vehA 92 1.03e+01 1kzfA 230 1.13e+01 d.108.1.3 73354 2gr8A 99 1.17e+01 1zo2A 129 1.20e+01 1nox 205 1.21e+01 1nox d.90.1.1 40242 1slaA 134 1.29e+01 1c1lA b.29.1.3 24196 1b8aA 438 1.30e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1vrbA 342 1.36e+01 1h5uA 842 1.48e+01 1a8i c.87.1.4 60655 1w6nA 134 1.49e+01 3fib 249 1.55e+01 3fib d.171.1.1 42455 1fib 269 1.59e+01 3fib d.171.1.1 42456 2a15A 139 1.64e+01 1tf4A 605 1.65e+01 1tf4A a.102.1.2,b.2.2.2 18827,22393 1q7lA 198 1.76e+01 c.56.5.4 96044 1sltA 134 1.82e+01 1c1lA b.29.1.3 24186 1qyaA 307 1.84e+01 d.21.1.2,d.21.1.2 104653,104654 2fibA 269 1.89e+01 3fib d.171.1.1 42457 1t9mA 214 1.92e+01 3proD 166 2.03e+01 3proC d.52.1.1,d.52.1.1 38814,38815 1rbp 182 2.05e+01 1aqb b.60.1.1 27085 1hjrA 158 2.12e+01 1hjrA c.55.3.6 33727 3proC 166 2.22e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1qmrA 159 2.60e+01 1bv1 d.129.3.1 41314 1hbp 183 2.65e+01 1aqb b.60.1.1 27079 1hbq 183 2.73e+01 1aqb b.60.1.1 27078 2f4lA 297 2.81e+01 1kt6A 183 2.84e+01 b.60.1.1 84466 1sdjA 310 2.92e+01 d.21.1.2,d.21.1.2 98807,98808 1qcnA 421 2.95e+01 1qcnA b.34.8.1,d.177.1.1 59017,59018 1lshA 1056 3.05e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1xnkA 196 3.06e+01 3fivA 116 3.14e+01 1fmb b.50.1.1 26768 1c0aA 585 3.14e+01 1c0aA b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1xo3A 101 3.23e+01 1g0dA 695 3.24e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1fivA 113 3.27e+01 1fmb b.50.1.1 26764 4fiv 113 3.27e+01 1fmb b.50.1.1 26762 2c30A 321 3.29e+01 1uxzA 131 3.35e+01 b.18.1.10 100170 1hyoA 421 3.37e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1qqjA 419 3.39e+01 1qcnA b.34.8.1,d.177.1.1 59034,59035 1su8A 636 3.41e+01 e.26.1.2 98999 1jjyA 636 3.49e+01 1jjyA 1i5pA 633 3.49e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2fivA 116 3.51e+01 1fmb b.50.1.1 26766 1p6pA 125 3.56e+01 b.60.1.2 87839 1aqb 183 3.61e+01 1aqb b.60.1.1 27084 1n9pA 207 3.65e+01 b.1.18.16 80343 2oneA 436 3.65e+01 4enl c.1.11.1,d.54.1.1 29203,38847 1qcoA 423 3.66e+01 1qcnA b.34.8.1,d.177.1.1 59021,59022 2al1A 436 3.68e+01 1h1aA 191 3.69e+01 b.29.1.11 83450 2al2A 436 3.69e+01 1nkgA 508 3.74e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1sltB 134 3.81e+01 1c1lA b.29.1.3 24187 1pn2A 280 3.84e+01 d.38.1.4,d.38.1.4 94930,94931 1bhgA 613 3.87e+01 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1k3eA 156 3.94e+01 d.198.1.1 68103 1v7rA 186 3.99e+01 c.51.4.1 100482 1eysH 259 4.01e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1gzwA 134 4.01e+01 b.29.1.3 90535 1ikpA 613 4.03e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1j1bA 420 4.07e+01 d.144.1.7 90758 1ktjA 129 4.10e+01 b.1.18.7 72974 2agdA 287 4.13e+01 1vq0A 302 4.15e+01 1e2tA 284 4.18e+01 1e2tA d.3.1.5 37121 1h9dA 134 4.18e+01 1cmoA b.2.5.6 60821 1ijhA 504 4.31e+01 c.3.1.2,d.16.1.1 66161,66162 1vkdA 338 4.32e+01 b.67.2.4 108644 1b8sA 504 4.36e+01 1b8sA c.3.1.2,d.16.1.1 30335,37866 1zhhB 242 4.38e+01 1nvpD 108 4.41e+01 a.32.1.1,b.56.1.1 92213,92214 2b4wA 315 4.51e+01 2fm8A 135 4.54e+01 1kl9A 182 4.68e+01 b.40.4.5 72681 1vapA 123 4.72e+01 1poa a.133.1.2 19548 1b78A 193 4.99e+01 1b78A c.51.4.1 33221 1b4vA 504 5.01e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 1mxtA 504 5.04e+01 c.3.1.2,d.16.1.1 79671,79672 1n1pA 504 5.04e+01 c.3.1.2,d.16.1.1 91546,91547 1n4wA 504 5.04e+01 c.3.1.2,d.16.1.1 91676,91677 1zq7A 207 5.04e+01 2mjpA 193 5.15e+01 1b78A c.51.4.1 33223 4enl 436 5.15e+01 4enl c.1.11.1,d.54.1.1 29202,38846 2fg1A 158 5.16e+01 1y9qA 192 5.34e+01 1oneA 436 5.50e+01 4enl c.1.11.1,d.54.1.1 29200,38844 3pcgM 238 5.59e+01 3pchM b.3.6.1 22742 2pcdM 238 5.59e+01 3pchM b.3.6.1 22760 1vjw 60 5.60e+01 1fxd d.58.1.4 38991 1vzyA 291 5.60e+01 1bib 321 5.62e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16084,24448,40788 1bv1 159 5.67e+01 1bv1 d.129.3.1 41313 2cu6A 103 5.68e+01 2b20A 403 5.72e+01 1p0zA 131 5.72e+01 d.110.6.1 93882 1q7fA 286 5.79e+01 b.68.9.1 96036 1nnxA 109 5.81e+01 b.40.10.1 92013 1w6tA 444 5.89e+01 1lylA 504 6.00e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1i78A 297 6.04e+01 f.4.4.1 66046 1enxA 190 6.07e+01 1axkA b.29.1.11 24325 3pchM 238 6.18e+01 3pchM b.3.6.1 22748 1xkpC 143 6.20e+01 1hbxG 157 6.23e+01 1awcA a.4.5.21 60934 2afcA 168 6.27e+01 1adqL 213 6.39e+01 8fabA b.1.1.1,b.1.1.2 20272,21272 1ok7A 366 6.61e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1ci9A 392 6.88e+01 e.3.1.1 64767 1kolA 398 6.90e+01 b.35.1.2,c.2.1.1 77474,77475 1aol 228 6.94e+01 1aol b.20.1.1 23840 1k52A 72 6.99e+01 d.15.7.1 68148 1okhA 46 7.03e+01 g.13.1.1 93253 1rmg 422 7.13e+01 1rmg b.80.1.3 28029 1o9yA 84 7.14e+01 b.139.1.1 92692 1hnf 182 7.18e+01 1qa9A b.1.1.1,b.1.1.3 19741,21680 1k4jA 230 7.19e+01 d.108.1.3 72057 1k51A 72 7.28e+01 d.15.7.1 68147 1tsrA 219 7.42e+01 1tupA b.2.5.2 22437 1tupA 219 7.42e+01 1tupA b.2.5.2 22434 1e1oA 504 7.44e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2ptd 298 7.48e+01 2plc c.1.18.2 29605 1ry9A 145 7.57e+01 d.198.1.1 98094 1bia 321 7.59e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1q52A 314 7.60e+01 c.14.1.3 95846 2tdt 274 7.61e+01 3tdt b.81.1.2 28054 1ycsA 199 7.63e+01 1tupA b.2.5.2 22433 1mdc 133 7.65e+01 1hmt b.60.1.2 27198 1a9v 129 7.67e+01 1a9v b.1.18.7 21946 1f5mA 180 7.78e+01 1f5mB d.110.2.1 40895 2polA 366 7.78e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 3tdt 274 7.94e+01 3tdt b.81.1.2 28053 1jkeA 145 8.01e+01 c.110.1.1 66791 1t3tA 1303 8.19e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1uv6A 210 8.23e+01 b.96.1.1 100030 1ci8A 392 8.23e+01 e.3.1.1 64765 1gym 298 8.28e+01 2plc c.1.18.2 29606 1f5mB 180 8.34e+01 1f5mB d.110.2.1 40896 1l2tA 235 8.35e+01 c.37.1.12 73514 1xezA 721 8.40e+01 1kgqA 274 8.56e+01 b.81.1.2 72447 1s7iA 124 8.58e+01 d.58.4.9 105353 1i82A 189 8.61e+01 1i82A b.1.9.2 61937 1i8aA 189 8.61e+01 1i82A b.1.9.2 61951 1ux2A 212 8.66e+01 b.96.1.1 100132 1epfA 191 8.87e+01 2ncm b.1.1.4,b.1.1.4 21694,21695 1zyoA 191 8.89e+01 1xnb 185 8.89e+01 1axkA b.29.1.11 24308 2hgsA 474 8.94e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1mmiA 366 8.94e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1hz6A 72 8.97e+01 2ptl d.15.7.1 61429