# List of top-scoring protein chains for T0322.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u1zA 168 2.61e-15 d.38.1.6 107602 1zkiA 133 4.04e-14 2b6eA 146 2.46e-13 1o0iA 138 2.62e-13 d.38.1.5 86532 2cy9A 140 2.89e-13 1wluA 136 3.85e-13 1psuA 140 1.01e-12 d.38.1.5 88285 2fs2A 151 1.03e-12 1vpmA 169 2.48e-12 1yliA 153 2.70e-12 1vh5A 148 4.43e-12 d.38.1.5 100642 1y7uA 174 4.94e-12 1sbkA 144 6.30e-12 d.38.1.5 98791 1vh9A 149 2.35e-11 d.38.1.5 100653 1z6bA 154 3.11e-11 1q4uA 151 4.62e-10 d.38.1.5 95828 1ixlA 131 1.63e-09 d.38.1.5 90717 1yocA 147 3.24e-09 2cyeA 133 2.17e-08 1t82A 155 4.88e-08 d.38.1.5 106639 1njkA 156 4.92e-08 d.38.1.1 85818 2b3nA 159 1.54e-07 1sh8A 154 4.33e-07 d.38.1.5 105549 2av9A 147 4.83e-06 1s5uA 138 8.54e-06 d.38.1.1 98573 1iq6A 134 4.16e-05 d.38.1.4 76755 1q6wA 161 4.84e-05 d.38.1.4 96000 1z54A 132 5.67e-05 2gf6A 135 2.14e-04 2cwzA 141 2.55e-04 2aliA 158 6.58e-04 1lo9A 141 1.45e-02 d.38.1.1 74146 1lo7A 141 3.04e-02 d.38.1.1 74144 1c8uA 285 6.05e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 1pn2A 280 1.37e-01 d.38.1.4,d.38.1.4 94930,94931 1pn4A 280 2.50e-01 d.38.1.4,d.38.1.4 94940,94941 1tbuA 118 3.00e-01 2cdhS 248 5.66e-01 1s9cA 298 8.77e-01 1te5A 257 1.53e+00 d.153.1.1 106795 1mkaA 171 1.67e+00 1mkaA d.38.1.2 38543 2cf2C 342 2.00e+00 2bi0A 337 3.96e+00 1yycA 174 4.30e+00 1v6iA 232 6.51e+00 b.29.1.1 100383 2pelA 236 6.59e+00 1led b.29.1.1 24082 1xfrA 128 6.76e+00 2fjyA 142 6.89e+00 1dqeA 137 6.91e+00 1dqeA a.39.2.1 17388 1fts 295 7.21e+00 1ng1 a.24.13.1,c.37.1.10 16968,32279 1bhgA 613 7.61e+00 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1oysA 245 7.75e+00 d.14.1.4,d.101.1.1 93758,93759 1ex9A 285 9.55e+00 1cvl c.69.1.18 34785 1pkyA 470 1.37e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27068,29296,33150 1e0tA 470 1.37e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1e0uA 470 1.37e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27072,29300,33154 1sozA 314 1.38e+01 b.36.1.4,b.47.1.1 105859,105860 1sotA 320 1.39e+01 b.36.1.4,b.47.1.1 105852,105853 1oypA 245 1.43e+01 d.14.1.4,d.101.1.1 93734,93735 1te0A 318 1.49e+01 2ae8A 221 1.63e+01 1cr5A 189 1.72e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 2esrA 177 1.73e+01 1me8A 503 1.79e+01 c.1.5.1 79028 1cyw 205 1.96e+01 1cyx b.6.1.2 23024 1g6oA 330 2.02e+01 1g6oA c.37.1.11 32430 1tyyA 339 2.09e+01 1pvnA 376 2.36e+01 c.1.5.1 88312 1lrtA 376 2.37e+01 c.1.5.1 84685 1fftB 315 2.40e+01 1cyx b.6.1.2,f.17.2.1 23025,43628 1s1fA 406 2.41e+01 2d0eA 407 2.42e+01 1se6A 406 2.42e+01 2d09A 407 2.43e+01 1t93A 406 2.43e+01 1vkcA 158 2.46e+01 2bf6A 449 2.50e+01 1a0dA 440 2.62e+01 1a0cA c.1.15.3 29533 1fpwA 190 3.02e+01 1rec a.39.1.5 17329 1ej0A 180 3.56e+01 1ej0A c.66.1.2 34179 1nzrA 128 3.66e+01 1nwpA b.6.1.1 22959 1zo2A 129 4.27e+01 1mejA 223 4.27e+01 c.65.1.1 79029 1wk2A 121 4.29e+01 1meoA 209 4.34e+01 c.65.1.1 79035 1zlyA 203 4.40e+01 1azrA 128 4.41e+01 1nwpA b.6.1.1 22983 2reb 352 4.54e+01 2reb c.37.1.11,d.48.1.1 32282,38767 2recA 353 4.54e+01 2reb i.2.1.1 45879 1u94A 356 4.54e+01 c.37.1.11,d.48.1.1 107743,107744 1q3tA 236 4.93e+01 c.37.1.1 104525 1xhjA 88 5.01e+01 1s50A 259 5.14e+01 1aznA 128 5.19e+01 1nwpA b.6.1.1 23003 2bt4A 157 5.28e+01 1ilsA 128 5.48e+01 1nwpA b.6.1.1 22955 1iluA 128 5.69e+01 1nwpA b.6.1.1 22971 1jzgA 128 5.74e+01 b.6.1.1 67855 1udoA 255 5.75e+01 d.14.1.4,d.101.1.1 99215,99216 2tsaA 128 5.76e+01 1nwpA b.6.1.1 22991 1qwgA 251 5.77e+01 c.1.27.1 96473 1pk5A 248 5.79e+01 a.123.1.1 88139 1gu1A 156 5.91e+01 c.23.13.1 70563 1xb6A 128 6.03e+01 1etjA 128 6.17e+01 1nwpA b.6.1.1 22987 1x4zA 121 6.18e+01 3azuA 128 6.30e+01 1nwpA b.6.1.1 22943 1xb8A 128 6.33e+01 1zh7A 243 6.35e+01 1n10A 241 6.44e+01 b.7.3.1,b.52.1.3 79774,79775 1vkfA 188 6.50e+01 c.1.29.1 108656 1cyx 205 6.62e+01 1cyx b.6.1.2 23023 2ftaA 125 6.74e+01 2ft6A 124 6.77e+01 1w5rA 278 7.17e+01 1xp4A 379 7.31e+01 1ezlA 128 7.32e+01 1nwpA b.6.1.1 22967 1gtzA 156 7.33e+01 c.23.13.1 70539 1su8A 636 7.48e+01 e.26.1.2 98999 1r1cA 128 7.56e+01 b.6.1.1 96809 1udnA 255 7.70e+01 d.14.1.4,d.101.1.1 99213,99214 1mf8B 170 7.79e+01 a.39.1.5 79041 1auiB 169 7.79e+01 1auiB a.39.1.5 17325 1w8kA 447 7.97e+01 1grj 158 7.98e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1jvlA 128 8.01e+01 b.6.1.1 67349 3gcb 470 8.08e+01 3gcb d.3.1.1 37032 1a6r 471 8.16e+01 3gcb d.3.1.1 37033 1gcb 454 8.21e+01 3gcb d.3.1.1 37034 1w44A 331 8.23e+01 1ag0A 129 8.44e+01 1nwpA b.6.1.1 23001 2bolA 314 8.86e+01 1i53A 128 8.89e+01 b.6.1.1 66031 2fl8A 602 8.94e+01 1xb3A 128 8.98e+01