# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zkiA 133 6.52e-16 1o0iA 138 6.61e-16 d.38.1.5 86532 1vh5A 148 6.36e-15 d.38.1.5 100642 1j1yA 136 1.12e-14 d.38.1.5 90776 1wluA 136 1.18e-14 2fs2A 151 2.11e-14 1vpmA 169 3.97e-14 1yliA 153 9.18e-14 1z6bA 154 1.76e-13 2gvhA 288 1.43e-12 1q4uA 151 2.24e-12 d.38.1.5 95828 1ixlA 131 3.00e-12 d.38.1.5 90717 1yocA 147 1.73e-11 1t82A 155 7.79e-11 d.38.1.5 106639 2cyeA 133 2.64e-10 1sh8A 154 1.86e-09 d.38.1.5 105549 2b3nA 159 2.53e-09 1s5uA 138 1.21e-08 d.38.1.1 98573 1z54A 132 1.74e-07 2gf6A 135 1.48e-06 2cwzA 141 1.86e-06 2aliA 158 3.21e-06 1iq6A 134 3.33e-06 d.38.1.4 76755 1lo7A 141 4.55e-05 d.38.1.1 74144 1c8uA 285 1.03e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 1tbuA 118 6.52e-04 1pn2A 280 8.26e-04 d.38.1.4,d.38.1.4 94930,94931 1mkaA 171 8.56e-04 1mkaA d.38.1.2 38543 2essA 248 1.38e-02 2bi0A 337 1.41e-02 1te5A 257 4.45e-01 d.153.1.1 106795 1qyaA 307 1.29e+00 d.21.1.2,d.21.1.2 104653,104654 1sdjA 310 1.50e+00 d.21.1.2,d.21.1.2 98807,98808 1r4vA 171 2.15e+00 a.197.1.1 97049 1ydwA 362 2.20e+00 1s1fA 406 2.24e+00 1ikpA 613 2.54e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1su8A 636 3.17e+00 e.26.1.2 98999 1w5rA 278 3.19e+00 1qv1A 195 4.26e+00 a.39.1.5 96347 1h30A 422 4.91e+00 b.29.1.4,b.29.1.4 76604,76605 1wbeA 209 5.00e+00 1yycA 174 6.65e+00 1i76A 163 6.68e+00 1hfc d.92.1.11 61877 1swxA 209 6.78e+00 a.224.1.1 106075 2bf6A 449 6.95e+00 1nnxA 109 7.09e+00 b.40.10.1 92013 1s50A 259 7.84e+00 1xahA 354 9.02e+00 1e0tA 470 1.06e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1g87A 614 1.31e+01 a.102.1.2,b.2.2.2 83275,83276 1josA 128 1.32e+01 d.52.7.1 84191 1xfrA 128 1.36e+01 1svdM 110 1.37e+01 1zz1A 369 1.40e+01 1kt6A 183 1.55e+01 b.60.1.1 84466 1uhkA 191 1.56e+01 1sjdA 368 1.61e+01 c.1.11.2,d.54.1.1 105632,105633 1txqA 93 1.73e+01 1wk2A 121 1.90e+01 1cojA 212 2.14e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1cbs 137 2.16e+01 1hmt b.60.1.2 27201 1n62C 288 2.16e+01 d.87.2.1,d.145.1.3 80094,80095 1gx3A 284 2.21e+01 d.3.1.5 70678 1yt8A 539 2.29e+01 1rf6A 427 2.30e+01 d.68.2.2 97366 1lzlA 323 2.31e+01 c.69.1.2 78306 1dqeA 137 2.33e+01 1dqeA a.39.2.1 17388 1yh3A 256 2.39e+01 1wguA 136 2.59e+01 1auiB 169 2.61e+01 1auiB a.39.1.5 17325 1fo0B 112 2.62e+01 1kb5B b.1.1.1 20631 2f4lA 297 2.76e+01 2bm3A 166 2.82e+01 1r9dA 787 2.85e+01 c.7.1.1 104865 1gtzA 156 2.89e+01 c.23.13.1 70539 1f7lA 121 2.90e+01 1f7lA d.150.1.2 59666 1tmxA 293 2.91e+01 1vgmA 378 3.03e+01 2a1vA 144 3.22e+01 1pmi 440 3.31e+01 1pmi b.82.1.3 28114 1xkrA 206 3.35e+01 1f60A 458 3.36e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1dbiA 280 3.52e+01 1gci c.41.1.1 32543 1te0A 318 3.60e+01 1upaA 573 3.61e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2conA 79 3.80e+01 1zzmA 259 3.83e+01 1sg6A 393 3.84e+01 e.22.1.1 105522 1ustA 93 3.84e+01 a.4.5.13 99884 1idpA 172 3.85e+01 d.17.4.1 83685 1g8iA 190 3.86e+01 1rec a.39.1.5 60363 1vehA 92 3.92e+01 1vrmA 325 3.94e+01 1zyoA 191 3.95e+01 1txkA 498 4.01e+01 b.1.18.2,b.30.5.9 107425,107426 1z98A 281 4.03e+01 1t4wA 196 4.07e+01 b.2.5.2 106427 1cseI 71 4.08e+01 1egpA d.40.1.1 38559 1u58A 253 4.08e+01 2c4wA 176 4.17e+01 2d83A 363 4.18e+01 2cunA 410 4.26e+01 1u2cA 246 4.36e+01 b.1.6.2,d.272.1.1 107610,107611 1sflA 238 4.40e+01 1y0yA 353 4.42e+01 2ew8A 249 4.53e+01 1d9uA 154 4.57e+01 1am7A d.2.1.4 59111 1rsgA 516 4.58e+01 1meoA 209 4.65e+01 c.65.1.1 79035 1hr0W 71 4.67e+01 1ah9 b.40.4.5 25329 2csoA 127 4.81e+01 1d2oA 187 4.83e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1n67A 359 4.90e+01 b.2.3.4,b.2.3.4 85354,85355 1jm1A 204 5.00e+01 b.33.1.1 71745 2ft6A 124 5.04e+01 1ux6A 350 5.18e+01 b.29.1.16,g.75.1.1 100145,100146 2esrA 177 5.40e+01 1u8fO 335 5.54e+01 1ww7A 160 5.57e+01 1dz3A 130 5.58e+01 1dz3A c.23.1.1 31105 1r2jA 366 5.61e+01 a.29.3.1,e.6.1.1 96869,96870 1fhgA 154 5.61e+01 1tlk b.1.1.4 21706 1wurA 220 5.65e+01 1xn7A 78 5.68e+01 1fm0D 81 5.76e+01 1fmaD d.15.3.1 37642 1vlpA 441 5.78e+01 d.41.2.2,d.41.2.3 108840,108841 1x9pA 523 5.85e+01 1k4nA 192 5.89e+01 d.32.1.5 72059 1u6tA 121 5.97e+01 1tiqA 180 6.07e+01 d.108.1.1 107010 1nytA 271 6.23e+01 c.2.1.7,c.58.1.5 86417,86418 1p4cA 380 6.31e+01 c.1.4.1 94100 1eemA 241 6.33e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 2bwnA 401 6.33e+01 1kyqA 274 6.49e+01 c.2.1.11,e.37.1.1 73281,73282 1to6A 371 6.50e+01 c.141.1.1 107170 1vkcA 158 6.53e+01 1gl2B 65 6.55e+01 h.1.15.1 65279 1f28A 297 6.57e+01 1bkpA d.117.1.1 59608 1vjlA 164 6.63e+01 d.257.1.1 100822 1cvrA 435 6.65e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1i1jA 108 6.73e+01 1i1jA b.34.2.1 61531 1se8A 301 6.75e+01 b.40.4.3 105448 1jzgA 128 6.77e+01 b.6.1.1 67855 1w0dA 337 7.01e+01 1gnxA 479 7.01e+01 c.1.8.4 76241 2ffsA 157 7.03e+01 1at3A 247 7.05e+01 1at3A b.57.1.1 27021 2cuaA 135 7.07e+01 2cuaA b.6.1.2 23039 1uxzA 131 7.17e+01 b.18.1.10 100170 2bolA 314 7.19e+01 1vr3A 191 7.20e+01 2brqA 97 7.26e+01 1fvkA 189 7.29e+01 1fvkA c.47.1.13 90351 1yqyA 523 7.39e+01 1pa7A 130 7.47e+01 a.40.1.1 94410 2grrA 161 7.47e+01 1p5zB 263 7.47e+01 c.37.1.1 87815 1l4uA 176 7.50e+01 c.37.1.2 73568 1m12A 84 7.52e+01 a.64.1.1 84745 2aeeA 211 7.54e+01 1cjxA 357 7.60e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1ve4A 206 7.66e+01 1txlA 215 7.67e+01 b.60.1.4 107429 1yrcA 414 7.70e+01 1qi9A 556 7.71e+01 1qhbA a.111.1.2 19053 1f3uA 118 7.79e+01 1f3uA b.65.1.1 27521 1j27A 102 7.81e+01 d.58.50.1 90778 1y8qA 346 8.17e+01 1snnA 227 8.22e+01 d.115.1.2 105821 1ngr 85 8.27e+01 1ngr a.77.1.2 18422 2f5gA 133 8.30e+01 1c44A 123 8.36e+01 1qndA d.106.1.1 40795 1l0qA 391 8.43e+01 b.1.3.1,b.69.2.3 77644,77645 1pvtA 238 8.43e+01 c.74.1.1 95189 1zc1A 208 8.44e+01 1lddA 74 8.49e+01 a.4.5.34 73841 1kw4A 89 8.57e+01 a.60.1.2 73077 1yoaA 159 8.64e+01 1psrA 100 8.68e+01 1psrA a.39.1.2 17180 1a9xB 379 8.69e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1ug3A 339 8.70e+01 1z8oA 404 8.81e+01 1sfxA 109 8.82e+01 a.4.5.50 105505 2hrvA 142 8.84e+01 2hrvA b.47.1.4 26429 1rlw 126 8.86e+01 1rlw b.7.1.1 23177 1vjzA 341 8.93e+01 c.1.8.3 100838