# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o0iA 138 3.20e-16 d.38.1.5 86532 1zkiA 133 7.44e-16 1vh5A 148 2.46e-15 d.38.1.5 100642 1j1yA 136 1.65e-14 d.38.1.5 90776 1wluA 136 1.65e-14 2fs2A 151 1.81e-14 1yliA 153 7.96e-14 1vpmA 169 1.64e-13 1z6bA 154 5.25e-13 2gvhA 288 1.43e-12 1q4uA 151 5.69e-12 d.38.1.5 95828 1ixlA 131 1.32e-11 d.38.1.5 90717 1yocA 147 1.69e-11 1t82A 155 6.53e-11 d.38.1.5 106639 1sh8A 154 3.76e-10 d.38.1.5 105549 2cyeA 133 7.84e-10 1s5uA 138 1.64e-08 d.38.1.1 98573 2b3nA 159 8.94e-08 1z54A 132 1.25e-07 2cwzA 141 2.46e-06 2gf6A 135 3.21e-06 2aliA 158 6.19e-06 1iq6A 134 8.28e-06 d.38.1.4 76755 1lo7A 141 5.35e-05 d.38.1.1 74144 1tbuA 118 6.76e-05 1mkaA 171 1.00e-04 1mkaA d.38.1.2 38543 1c8uA 285 3.49e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 2bi0A 337 8.85e-04 2essA 248 1.66e-03 1yycA 174 4.47e-02 1te5A 257 3.28e-01 d.153.1.1 106795 1pn2A 280 8.68e-01 d.38.1.4,d.38.1.4 94930,94931 1lshA 1056 2.27e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1xdnA 277 2.54e+00 1rf6A 427 2.64e+00 d.68.2.2 97366 2bf6A 449 3.19e+00 2bm3A 166 3.42e+00 1s1fA 406 3.44e+00 1sdjA 310 3.56e+00 d.21.1.2,d.21.1.2 98807,98808 1b06A 210 3.74e+00 1avmA a.2.11.1,d.44.1.1 15740,38737 1g24A 211 4.26e+00 1g24A d.166.1.1 42270 1vrmA 325 5.22e+00 1nkgA 508 6.04e+00 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 2eifA 136 7.92e+00 1bkb b.34.5.2,b.40.4.5 24607,25339 2a15A 139 9.94e+00 1h3nA 878 1.10e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1oh0A 131 1.12e+01 d.17.4.3 87004 2f6kA 307 1.17e+01 1txqA 93 1.24e+01 2f4lA 297 1.26e+01 2b4wA 315 1.33e+01 1ve4A 206 1.34e+01 1tcvA 287 1.34e+01 1su8A 636 1.39e+01 e.26.1.2 98999 1cb0A 283 1.53e+01 1cb0A c.56.2.1 33790 1xkpC 143 1.64e+01 1qyaA 307 1.65e+01 d.21.1.2,d.21.1.2 104653,104654 1f60A 458 1.75e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1uv7A 110 1.91e+01 d.67.4.1 100040 1fm0D 81 2.04e+01 1fmaD d.15.3.1 37642 1n9pA 207 2.20e+01 b.1.18.16 80343 2sli 679 2.26e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1ir21 140 2.29e+01 1at3A 247 2.49e+01 1at3A b.57.1.1 27021 1yewA 382 2.54e+01 1r4vA 171 2.74e+01 a.197.1.1 97049 1ydwA 362 2.80e+01 1u58A 253 2.82e+01 1rmg 422 2.88e+01 1rmg b.80.1.3 28029 1tu1A 148 3.05e+01 d.107.1.3 107316 1gk8I 140 3.08e+01 d.73.1.1 65242 1cr5A 189 3.09e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 2gr8A 99 3.10e+01 1w2wA 211 3.15e+01 c.124.1.5 109130 2beiA 170 3.25e+01 1tiqA 180 3.27e+01 d.108.1.1 107010 1k4nA 192 3.38e+01 d.32.1.5 72059 1unnC 115 3.44e+01 d.240.1.1 99680 1h6tA 291 3.63e+01 b.1.18.15,c.10.2.1 65686,65687 2agaA 190 3.65e+01 1xeuA 263 3.69e+01 1i76A 163 3.74e+01 1hfc d.92.1.11 61877 1g87A 614 3.76e+01 a.102.1.2,b.2.2.2 83275,83276 2bwqA 129 3.94e+01 1cbs 137 3.98e+01 1hmt b.60.1.2 27201 1geeA 261 4.10e+01 c.2.1.2 90509 1ry9A 145 4.11e+01 d.198.1.1 98094 1wdjA 187 4.18e+01 1u69A 163 4.21e+01 d.32.1.7 107699 2azpA 318 4.24e+01 1zo2A 129 4.30e+01 1o6vA 466 4.35e+01 b.1.18.15,c.10.2.1 81099,81100 1gsoA 431 4.42e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1tr0A 108 4.54e+01 d.58.4.4 107261 1qysA 106 4.58e+01 k.41.1.1 96603 2fimA 276 4.59e+01 1r7mA 235 4.71e+01 1k7hA 476 4.72e+01 c.76.1.1 72101 1d2oA 187 4.78e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1w66A 232 4.89e+01 1o9gA 250 5.18e+01 c.66.1.29 86692 1gmiA 136 5.22e+01 b.7.1.1 65309 1zxxA 319 5.28e+01 1g7sA 594 5.31e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1w9hA 427 5.33e+01 1ur1A 378 5.38e+01 c.1.8.3 99804 1p4cA 380 5.41e+01 c.1.4.1 94100 1b8oA 284 5.45e+01 1b8oA c.56.2.1 33762 2f4nA 273 5.48e+01 1ikpA 613 5.51e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1kt6A 183 5.51e+01 b.60.1.1 84466 1ex2A 189 5.56e+01 1ex2A c.51.4.2 33225 1oruA 195 5.60e+01 b.58.1.2 93464 1iznA 286 5.80e+01 e.43.1.1 83847 1ww7A 160 5.83e+01 1o8vA 134 6.08e+01 b.60.1.2 86680 1ej0A 180 6.11e+01 1ej0A c.66.1.2 34179 2cu6A 103 6.20e+01 1rkiA 102 6.29e+01 1lqaA 346 6.29e+01 c.1.7.1 84674 1t4wA 196 6.33e+01 b.2.5.2 106427 1zxfA 155 6.35e+01 3pmgA 561 6.37e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1svdM 110 6.51e+01 2awkA 228 6.63e+01 1v7wA 807 6.63e+01 a.102.1.4,b.30.5.3 108411,108412 1zyoA 191 6.68e+01 1ux6A 350 6.74e+01 b.29.1.16,g.75.1.1 100145,100146 1qv1A 195 6.79e+01 a.39.1.5 96347 2bc4A 211 6.86e+01 1i31A 314 6.88e+01 1bw8A b.2.7.1 22481 1ic6A 279 7.08e+01 1gci c.41.1.1 62257 1cvrA 435 7.19e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1iujA 106 7.26e+01 d.58.4.5 90701 1gnxA 479 7.43e+01 c.1.8.4 76241 1id2A 106 7.55e+01 1aac b.6.1.1 62288 1bli 483 7.57e+01 1bli b.71.1.1,c.1.8.1 27715,28702 2hgsA 474 7.64e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1tp6A 128 7.70e+01 d.17.4.12 107184 1l1qA 186 7.77e+01 c.61.1.1 77653 1wddS 128 8.02e+01 1cseI 71 8.13e+01 1egpA d.40.1.1 38559 1xebA 150 8.13e+01 1ihjA 98 8.14e+01 1pdr b.36.1.1 62382 1f39A 101 8.29e+01 1umuA b.87.1.1 28386 1uesA 191 8.29e+01 a.2.11.1,d.44.1.1 107798,107799 2gzqA 200 8.40e+01 1i8aA 189 8.43e+01 1i82A b.1.9.2 61951 1xp8A 366 8.45e+01 1vpkA 378 8.48e+01 1s50A 259 8.49e+01 1ztuA 341 8.52e+01 1ustA 93 8.56e+01 a.4.5.13 99884 1kzfA 230 8.75e+01 d.108.1.3 73354 1ayl 541 8.83e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1j9lA 247 8.87e+01 c.106.1.1 62762 1swxA 209 8.91e+01 a.224.1.1 106075 1gy6A 127 8.92e+01 d.17.4.2 70736