# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u1zA 168 6.82e-15 d.38.1.6 107602 2b6eA 146 1.02e-14 1o0iA 138 1.49e-14 d.38.1.5 86532 1zkiA 133 2.95e-14 1vh5A 148 1.62e-13 d.38.1.5 100642 2fs2A 151 5.40e-13 1psuA 140 6.64e-13 d.38.1.5 88285 1wluA 136 7.58e-13 1j1yA 136 9.91e-13 d.38.1.5 90776 1yliA 153 3.12e-12 1vpmA 169 2.09e-11 1q4uA 151 3.80e-11 d.38.1.5 95828 2gvhA 288 5.97e-11 1t82A 155 6.27e-11 d.38.1.5 106639 1ixlA 131 1.34e-10 d.38.1.5 90717 1z6bA 154 2.76e-10 1yocA 147 2.82e-09 2cyeA 133 8.51e-09 1sh8A 154 3.15e-08 d.38.1.5 105549 1njkA 156 6.29e-08 d.38.1.1 85818 2b3nA 159 6.20e-07 1s5uA 138 3.79e-06 d.38.1.1 98573 2av9A 147 4.43e-06 2cwzA 141 2.72e-05 2gf6A 135 2.85e-05 1c8uA 285 5.32e-05 1c8uA d.38.1.3,d.38.1.3 38547,38548 1z54A 132 6.65e-05 1iq6A 134 3.87e-04 d.38.1.4 76755 2aliA 158 6.63e-04 1lo7A 141 8.42e-03 d.38.1.1 74144 1bvqA 141 9.76e-03 1bvqA d.38.1.1 38542 1pn2A 280 9.90e-03 d.38.1.4,d.38.1.4 94930,94931 2bi0A 337 1.13e-02 2essA 248 4.05e-02 1mkaA 171 1.27e-01 1mkaA d.38.1.2 38543 1tbuA 118 4.67e-01 1te5A 257 1.77e+00 d.153.1.1 106795 2awkA 228 2.13e+00 1ikpA 613 3.00e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1wdkC 390 5.71e+00 c.95.1.1,c.95.1.1 109258,109259 1h30A 422 6.45e+00 b.29.1.4,b.29.1.4 76604,76605 1lzlA 323 6.83e+00 c.69.1.2 78306 1txqA 93 7.68e+00 1hw7A 255 8.81e+00 1i7fA d.193.1.1 61297 1s50A 259 8.92e+00 1sr8A 298 9.09e+00 e.54.1.1 105959 1yt8A 539 1.17e+01 1hbq 183 1.21e+01 1aqb b.60.1.1 27078 1aqb 183 1.33e+01 1aqb b.60.1.1 27084 1kypA 237 1.37e+01 d.22.1.1 73280 1vmaA 306 1.39e+01 a.24.13.1,c.37.1.10 108887,108888 1r4vA 171 1.43e+01 a.197.1.1 97049 1lfwA 470 1.48e+01 c.56.5.4,d.58.19.1 77942,77943 1e8gA 560 1.66e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1zbqA 327 1.68e+01 1kt6A 183 1.79e+01 b.60.1.1 84466 1ema 236 1.86e+01 1ema d.22.1.1 38339 1vhoA 346 1.90e+01 b.49.3.1,c.56.5.4 100694,100695 1wohA 305 1.95e+01 c.42.1.1 109446 1q3eA 207 1.95e+01 b.82.3.2 95669 1sjdA 368 1.97e+01 c.1.11.2,d.54.1.1 105632,105633 2gsq 202 2.01e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1tib 269 2.13e+01 3tgl c.69.1.17 34738 1ycdA 243 2.30e+01 1yoeA 322 2.37e+01 1ei1A 391 2.45e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 2f7tA 227 2.60e+01 1p9bA 442 2.64e+01 c.37.1.10 94385 1xkrA 206 2.66e+01 1vkcA 158 2.71e+01 1f7lA 121 2.75e+01 1f7lA d.150.1.2 59666 1xx6A 191 2.83e+01 1ju2A 536 2.84e+01 c.3.1.2,d.16.1.1 77169,77170 1wurA 220 2.93e+01 1yirA 408 3.00e+01 1xi1A 575 3.02e+01 1cbs 137 3.08e+01 1hmt b.60.1.2 27201 1cvrA 435 3.20e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1r4xA 275 3.28e+01 b.1.10.3,d.105.1.2 97054,97055 1w1kA 560 3.32e+01 d.58.32.1,d.145.1.1 109059,109060 2btoA 473 3.35e+01 1zpuA 534 3.42e+01 1se8A 301 3.48e+01 b.40.4.3 105448 1m4lA 307 3.51e+01 c.56.5.1 78604 1upaA 573 3.60e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1u58A 253 3.66e+01 1zosA 230 3.66e+01 1gz6A 319 3.77e+01 c.2.1.2 76410 1z90A 469 3.84e+01 1te0A 318 4.18e+01 1jipA 403 4.32e+01 a.104.1.1 66748 1h09A 338 4.42e+01 b.109.1.1,c.1.8.8 83420,83421 1u2cA 246 4.43e+01 b.1.6.2,d.272.1.1 107610,107611 2ctc 307 4.45e+01 1aye c.56.5.1 33802 1oxdA 227 4.59e+01 d.22.1.1 93687 1rkd 309 4.61e+01 1rkd c.72.1.1 34928 1pea 385 4.72e+01 1pea c.93.1.1 35662 1ogsA 497 4.76e+01 b.71.1.2,c.1.8.3 86997,86998 1wu4A 396 4.87e+01 1jjiA 311 4.90e+01 c.69.1.2 66766 1yrcA 414 4.95e+01 1plq 258 4.97e+01 1plq d.131.1.2,d.131.1.2 41388,41389 2gh1A 301 4.98e+01 1ynfA 458 5.15e+01 1q5dA 419 5.16e+01 a.104.1.1 95891 1vb5A 276 5.19e+01 1xahA 354 5.21e+01 1ek6A 348 5.29e+01 1xel c.2.1.2 29800 1j8mF 297 5.35e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1vb3A 428 5.35e+01 1u0tA 307 5.46e+01 e.52.1.1 107567 2g6tA 306 5.48e+01 1dz4A 414 5.64e+01 1phd a.104.1.1 18903 1yloA 348 5.76e+01 1mo9A 523 5.82e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 4ubpC 570 5.93e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1p3dA 475 6.12e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1pqzA 238 6.15e+01 b.1.1.2,d.19.1.1 104297,104298 1y0hA 105 6.35e+01 1l4iA 206 6.38e+01 b.1.11.1,b.7.2.1 73564,73565 2a0mA 316 6.46e+01 2bv5A 282 6.48e+01 2f4lA 297 6.63e+01 2b06A 155 6.65e+01 2a2cA 478 6.80e+01 1i1jA 108 6.84e+01 1i1jA b.34.2.1 61531 1e9rA 437 6.93e+01 c.37.1.11 64827 1eemA 241 7.03e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1qh8A 478 7.04e+01 1qguA c.92.2.3 35633 1xfoA 357 7.06e+01 1kqpA 271 7.09e+01 c.26.2.1 72883 1rf6A 427 7.10e+01 d.68.2.2 97366 1t3tA 1303 7.14e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1ydwA 362 7.20e+01 1e8cA 498 7.26e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1xhkA 187 7.27e+01 1su8A 636 7.33e+01 e.26.1.2 98999 1l5jA 865 7.47e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2ew8A 249 7.53e+01 1pbgA 468 7.53e+01 1e70M c.1.8.4 28946 2a2dA 478 7.58e+01 1hq0A 295 7.67e+01 1hzgA d.194.1.1 61122 1yq2A 1024 7.76e+01 1bowA 159 7.86e+01 1bowA d.60.1.1 39528 1xhvA 257 7.88e+01 c.52.1.19 109597 1v71A 323 7.88e+01 1pmi 440 7.90e+01 1pmi b.82.1.3 28114 1c44A 123 7.92e+01 1qndA d.106.1.1 40795 1d2oA 187 7.95e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1gnlA 544 7.96e+01 e.26.1.1 70287 1rypI 222 8.11e+01 d.153.1.4 41877 1yycA 174 8.14e+01 2bwqA 129 8.21e+01 2erbA 125 8.24e+01 1j8yF 297 8.30e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1suuA 312 8.38e+01 b.68.10.1 99006 1evlA 401 8.45e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1tia 279 8.53e+01 3tgl c.69.1.17 34737 1sgwA 214 8.59e+01 c.37.1.12 105541 1zz1A 369 8.68e+01 1ve3A 227 8.78e+01 2arsA 262 8.79e+01 1rg9A 383 8.81e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1k4nA 192 8.86e+01 d.32.1.5 72059 1v8bA 479 8.89e+01