# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vpdA 299 7.66e-04 1mv8A 436 3.33e-02 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1ovlA 271 8.44e-02 a.123.1.1 87455 2d0iA 333 8.75e-02 1v8bA 479 8.84e-02 1wwkA 307 9.16e-02 1fl2A 310 1.26e-01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1g8aA 227 1.77e-01 c.66.1.3 90506 1y81A 138 2.29e-01 1ppjB 439 2.76e-01 d.185.1.1,d.185.1.1 104254,104255 1wy6A 172 3.50e-01 1np3A 338 4.24e-01 a.100.1.2,c.2.1.6 85946,85947 1o4sA 389 5.48e-01 c.67.1.1 86620 1snyA 267 5.99e-01 c.2.1.2 105833 2ashA 381 8.60e-01 2g76A 335 9.66e-01 1pjcA 361 9.99e-01 1sayA c.2.1.4,c.23.12.2 30101,31361 1o12A 376 1.01e+00 b.92.1.5,c.1.9.10 80758,80759 2cdcA 366 1.08e+00 1x9gA 200 1.22e+00 c.33.1.3 109527 1sc6A 404 1.23e+00 1w4xA 542 1.29e+00 c.3.1.5,c.3.1.5 109171,109172 2bb3A 221 1.41e+00 1i2aA 219 1.44e+00 e.24.1.1 90660 1xhcA 367 1.53e+00 1lldA 319 1.54e+00 3ldh c.2.1.5,d.162.1.1 30177,42144 1nytA 271 1.59e+00 c.2.1.7,c.58.1.5 86417,86418 1xdwA 331 1.60e+00 1gsoA 431 1.67e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1mldA 314 1.75e+00 2cmd c.2.1.5,d.162.1.1 30122,42089 1yqzA 438 1.81e+00 4uagA 437 1.82e+00 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1y0eA 223 2.09e+00 1lfwA 470 2.13e+00 c.56.5.4,d.58.19.1 77942,77943 1lv7A 257 2.16e+00 c.37.1.20 78232 1yqdA 366 2.22e+00 1f89A 291 2.30e+00 d.160.1.1 64988 1gveA 327 2.42e+00 c.1.7.1 70597 1s9jA 341 2.64e+00 1hkhA 279 2.81e+00 c.69.1.12 90628 1ra9 159 2.99e+00 1vdrA c.71.1.1 34820 1kmqA 184 3.26e+00 c.37.1.8 84412 2c4nA 250 3.47e+00 1qmgA 524 3.51e+00 1qmgA a.100.1.2,c.2.1.6 18785,30182 4dfrA 159 3.53e+00 1vdrA c.71.1.1 34822 1vl1A 232 3.64e+00 c.124.1.1 108707 2bfwA 200 3.74e+00 1vdc 333 4.00e+00 1trb c.3.1.5,c.3.1.5 30545,30546 1txgA 335 4.05e+00 1kgdA 180 4.05e+00 c.37.1.1 68582 1li4A 432 4.27e+00 c.2.1.4,c.23.12.3 84616,84617 1rq2A 382 4.28e+00 c.32.1.1,d.79.2.1 105048,105049 1omrA 201 4.29e+00 a.39.1.5 93349 1xfkA 336 4.37e+00 1nqkA 381 4.58e+00 c.1.16.4 92050 1f06A 320 4.58e+00 1dapA c.2.1.3,d.81.1.3 59556,59557 1lssA 140 4.61e+00 c.2.1.9 74246 1l3iA 192 4.65e+00 c.66.1.22 77676 1u8vA 490 4.88e+00 1nq6A 302 4.90e+00 c.1.8.3 92046 1zuwA 272 5.11e+00 1d4oA 184 5.13e+00 1d4oA c.31.1.4 31748 1u2zA 433 5.19e+00 c.66.1.31 107626 2fueA 262 5.26e+00 1axn 323 5.43e+00 1avc a.65.1.1 18149 2ew2A 316 5.47e+00 1vbuA 328 5.48e+00 2cvjA 180 5.75e+00 1ihoA 283 5.78e+00 1ihoA c.26.1.4 62390 1uz5A 402 5.88e+00 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1brt 277 5.97e+00 1brt c.69.1.12 34699 1ju3A 583 5.98e+00 b.18.1.13,c.69.1.21 67300,67301 1vimA 200 6.20e+00 c.80.1.3 100758 1h1dA 221 6.30e+00 c.66.1.1 83452 1hyeA 313 6.39e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1qr0A 228 6.42e+00 1qr0A d.150.1.1,d.150.1.1 59038,59039 1vizA 240 6.48e+00 c.1.4.1 100784 2d1yA 256 6.54e+00 1j4aA 333 6.77e+00 c.2.1.4,c.23.12.1 71502,71503 1gdhA 320 6.91e+00 1gdhA c.2.1.4,c.23.12.1 30095,31355 1p1jA 533 7.02e+00 c.2.1.3,d.81.1.3 87687,87688 1y44A 320 7.08e+00 2ga9A 297 7.71e+00 1sjdA 368 7.99e+00 c.1.11.2,d.54.1.1 105632,105633 1yzyA 413 8.06e+00 1mh1 186 8.59e+00 1eesA c.37.1.8 32002 1avqA 228 8.71e+00 1avqA c.52.1.13 33326 1oi7A 288 8.72e+00 c.2.1.8,c.23.4.1 87049,87050 1dzlA 505 8.74e+00 1dzlA b.121.6.1 23586 2gaeA 346 8.75e+00 1n71A 180 8.75e+00 d.108.1.1 85370 1r3dA 264 8.89e+00 1vpt 348 8.90e+00 3mag c.66.1.25 34207 1jb3A 131 9.09e+00 1jc7A b.40.3.2 62833 2b0cA 206 9.47e+00 1wdiA 345 9.64e+00 1jb9A 316 1.00e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1es9A 232 1.01e+01 1wab c.23.10.3 31340 1bg6 359 1.02e+01 1bg6 a.100.1.5,c.2.1.6 18810,30214 1xfiA 367 1.06e+01 e.50.1.1 109584 1uufA 369 1.08e+01 b.35.1.2,c.2.1.1 100006,100007 1t0hB 224 1.08e+01 c.37.1.1 106208 1uqtA 482 1.10e+01 c.87.1.6 99794 1jflA 228 1.11e+01 c.78.2.1,c.78.2.1 71656,71657 1q6oA 216 1.12e+01 c.1.2.3 95986 2bllA 345 1.15e+01 1pzgA 331 1.16e+01 c.2.1.5,d.162.1.1 95425,95426 2b69A 343 1.16e+01 1vjnA 220 1.20e+01 d.157.1.4 100825 1j5pA 253 1.25e+01 d.81.1.3,c.2.1.3 71577,83092 1w98B 283 1.27e+01 1id1A 153 1.29e+01 1id1A c.2.1.9 62286 2gn4A 344 1.30e+01 1bco 327 1.35e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1fh9A 312 1.35e+01 1taxA c.1.8.3 28913 2d4pA 141 1.36e+01 1d2fA 390 1.41e+01 1d2fA c.67.1.3 34411 2ae0X 345 1.41e+01 2bdwA 362 1.43e+01 2bywA 418 1.44e+01 1xm7A 195 1.47e+01 1jysA 242 1.49e+01 c.56.2.1 77216 1m2kA 249 1.49e+01 c.31.1.5 84754 1w5fA 353 1.51e+01 1wy7A 207 1.52e+01 1mx3A 347 1.55e+01 c.2.1.4,c.23.12.1 79638,79639 1j8mF 297 1.56e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1xu9A 286 1.56e+01 1mgtA 174 1.57e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1jeoA 180 1.57e+01 c.80.1.3 66611 1j31A 262 1.59e+01 d.160.1.2 90808 1i4jA 110 1.61e+01 d.55.1.1 76734 2f8lA 344 1.62e+01 1n57A 291 1.64e+01 c.23.16.2 85328 1y08A 323 1.64e+01 1vdmA 153 1.64e+01 1tt0A 623 1.65e+01 1h2bA 359 1.66e+01 b.35.1.2,c.2.1.1 90543,90544 2b34A 199 1.67e+01 1ku1A 230 1.69e+01 a.118.3.1 72996 1gvnB 287 1.72e+01 c.37.1.21 76354 1qj4A 257 1.73e+01 1qj4A c.69.1.20 34796 1krhA 338 1.76e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1fyeA 229 1.77e+01 1fyeA c.23.16.4 31477 1tp9A 162 1.79e+01 1ako 268 1.80e+01 1ako d.151.1.1 41779 1g0cA 364 1.81e+01 7a3hA c.1.8.3 60165 1o1zA 234 1.82e+01 c.1.18.3 86555 2ahrA 259 1.84e+01 1g66A 207 1.85e+01 1bs9 c.69.1.30 31329 2ffeA 311 1.86e+01 1vr6A 350 1.86e+01 1cg5A 141 1.87e+01 1abwA a.1.1.2 15406 1s5jA 847 1.91e+01 2f1kA 279 1.91e+01 5nul 138 1.92e+01 5nul c.23.5.1 31191 1nf3A 195 1.92e+01 c.37.1.8 85594 1z5hA 780 1.93e+01 2apjA 260 1.93e+01 1zjjA 263 1.95e+01 1fukA 165 1.95e+01 1fukA c.37.1.19 32409 1to6A 371 1.97e+01 c.141.1.1 107170 1r0mA 375 1.98e+01 c.1.11.2,d.54.1.1 104747,104748 1umkA 275 1.98e+01 1va4A 279 1.98e+01 c.69.1.12 108458 1xcbA 211 1.98e+01 a.4.5.38,c.2.1.12 109552,109553 1wuiS 267 1.98e+01 1p6oA 161 1.99e+01 c.97.1.2 94185 2a7mA 250 1.99e+01 1tqjA 230 1.99e+01 c.1.2.2 107228 1mvcA 240 2.01e+01 a.123.1.1 79499 1b43A 340 2.02e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1t6nA 220 2.03e+01 c.37.1.19 106576 1ej0A 180 2.03e+01 1ej0A c.66.1.2 34179 1dljA 402 2.06e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1xpcA 248 2.07e+01 1m7bA 184 2.10e+01 c.37.1.8 74572 1qyrA 252 2.11e+01 c.66.1.24 104657 1ubkS 267 2.12e+01 e.19.1.1 88423 1g87A 614 2.13e+01 a.102.1.2,b.2.2.2 83275,83276 2f51A 118 2.14e+01 1wf3A 301 2.15e+01 1ituA 369 2.15e+01 c.1.9.7 71423 1tzlA 622 2.18e+01 2nacA 393 2.18e+01 2nadA c.2.1.4,c.23.12.1 30088,31348 1nf2A 268 2.19e+01 c.108.1.10 91849 1w6sA 599 2.20e+01 1ykjA 394 2.22e+01 2bi7A 384 2.22e+01 1ml4A 308 2.23e+01 c.78.1.1,c.78.1.1 79255,79256 2g8lA 299 2.23e+01 1g5aA 628 2.26e+01 b.71.1.1,c.1.8.1 65152,65153 1pq4A 291 2.27e+01 c.92.2.2 94995 2cvbA 188 2.39e+01 1s3eA 520 2.41e+01 c.3.1.2,d.16.1.5 98426,98427 1uwkA 557 2.41e+01 e.51.1.1 108065 1qopA 268 2.43e+01 2tysA c.1.2.4 28570 1z15A 344 2.47e+01 1gudA 288 2.48e+01 c.93.1.1 83326 7a3hA 303 2.51e+01 7a3hA c.1.8.3 28817 1wbhA 214 2.51e+01 1wthD 391 2.57e+01 2etvA 346 2.57e+01 2an1A 292 2.58e+01 3cms 323 2.62e+01 1smrA b.50.1.2 26865 1xklA 273 2.64e+01 1k0iA 394 2.68e+01 c.3.1.2,d.16.1.2 67942,67943 1gs5A 258 2.70e+01 c.73.1.2 70395 1zgyA 272 2.71e+01 1womA 271 2.72e+01 1t5hX 504 2.72e+01 e.23.1.1 106449 1pea 385 2.74e+01 1pea c.93.1.1 35662 1hdoA 206 2.80e+01 1he2A c.2.1.2 60965 1eluA 390 2.81e+01 1elqA c.67.1.3 34434 2dcnA 311 2.84e+01 1tp5A 119 2.85e+01 1xv2A 237 2.94e+01 1j6oA 268 2.95e+01 c.1.9.12 77088 1v0lA 313 2.96e+01 c.1.8.3 108207 1ni9A 338 3.01e+01 e.7.1.2 85739 1vecA 206 3.02e+01 c.37.1.19 100575 1dm5A 315 3.03e+01 1avc a.65.1.1 18186 1qkmA 255 3.04e+01 3erdA a.123.1.1 19309 1grj 158 3.04e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1usgA 346 3.05e+01 c.93.1.1 99864 1g60A 260 3.07e+01 c.66.1.11 70151 1x1zA 252 3.13e+01 2aa1A 144 3.28e+01 1zz1A 369 3.28e+01 1lqtA 456 3.29e+01 c.3.1.1,c.4.1.1 74198,74199 1qhtA 775 3.29e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1xqoA 256 3.32e+01 1jndA 420 3.34e+01 c.1.8.5,d.26.3.1 71757,71758 1nhs 447 3.34e+01 1nhp c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1qqfA 277 3.37e+01 1c3d a.102.4.4 18875 1cfzA 162 3.37e+01 1cfzA c.56.1.1 33754 1ucrA 78 3.37e+01 a.4.5.45 99188 1s9pA 227 3.42e+01 a.123.1.1 105384 1q3iA 214 3.45e+01 d.220.1.1 104524 1e3dA 266 3.46e+01 2frvA e.19.1.1 59188 2booA 247 3.49e+01 1tffA 234 3.50e+01 d.3.1.11 106854 1on3A 523 3.51e+01 c.14.1.4,c.14.1.4 87107,87108 1o5kA 306 3.52e+01 c.1.10.1 92504 1o50A 157 3.53e+01 d.37.1.1,d.37.1.1 92478,92479 1xx6A 191 3.57e+01 1p1mA 406 3.60e+01 b.92.1.4,c.1.9.9 87696,87697 1ru3A 732 3.66e+01 e.26.1.3 97835 1fp2A 352 3.67e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1t2dA 322 3.72e+01 c.2.1.5,d.162.1.1 99084,99085 1i1wA 303 3.72e+01 c.1.8.3 76732 1v2dA 381 3.74e+01 c.67.1.1 108281 1ebfA 358 3.81e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1yxyA 234 3.82e+01 1qe3A 489 3.83e+01 2bce c.69.1.1 34630 1j8bA 112 3.84e+01 d.222.1.1 77101 1php 394 3.85e+01 16pk c.86.1.1 35452 1va6A 518 3.88e+01 2ajrA 331 3.88e+01 1y2kA 349 3.91e+01 1p5fA 189 3.93e+01 c.23.16.2 94142 2as0A 396 4.03e+01 1xttA 216 4.04e+01 1v5eA 590 4.06e+01 1hfc 169 4.08e+01 1hfc d.92.1.11 40335 1x38A 602 4.11e+01 1dqpA 230 4.16e+01 1dqnA c.61.1.1 34069 1p9bA 442 4.22e+01 c.37.1.10 94385 4eugA 229 4.25e+01 3eugA c.18.1.1 31019 1v5vA 401 4.31e+01 1hrkA 359 4.37e+01 1hrkA c.92.1.1 61228 1v1aA 309 4.40e+01 c.72.1.1 100249 2cyjA 118 4.41e+01 1ff9A 450 4.42e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1ne7A 289 4.43e+01 c.124.1.1 91833 1fm0E 150 4.53e+01 1fmaE d.41.5.1 38629 1r8nA 185 4.54e+01 b.42.4.1 104851 2bgkA 278 4.63e+01 1e2wA 251 4.64e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1x13A 401 4.72e+01 2gnpA 266 4.73e+01 1npyA 271 4.78e+01 c.2.1.7,c.58.1.5 85995,85996 1paqA 189 4.78e+01 a.118.1.14 94413 2f02A 323 4.83e+01 1wkuA 254 4.85e+01 1km4A 247 4.85e+01 c.1.2.3 72740 2b4aA 138 4.86e+01 1wpbA 172 4.87e+01 1i60A 278 4.91e+01 c.1.15.4 71118 1yc5A 246 4.91e+01 1wr2A 238 4.93e+01 1w4tA 299 4.93e+01 1vmaA 306 4.96e+01 a.24.13.1,c.37.1.10 108887,108888 1xhkA 187 4.99e+01 1htrB 329 5.06e+01 1smrA 1gx1A 160 5.12e+01 d.79.5.1 70675 1jljA 189 5.13e+01 c.57.1.1 63169 1ptmA 329 5.19e+01 c.77.1.3 95104 1zq9A 285 5.20e+01 1wa3A 205 5.23e+01 1wg8A 285 5.23e+01 1ko3A 230 5.24e+01 d.157.1.1 90974 1kfcA 268 5.28e+01 c.1.2.4 77371 1esc 306 5.31e+01 1esc c.23.10.1 31334 1hy7A 173 5.33e+01 d.92.1.11 65957 1pvdA 537 5.35e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 1pyfA 312 5.35e+01 c.1.7.1 95334 1qwkA 317 5.37e+01 c.1.7.1 96482 1s68A 249 5.38e+01 d.142.2.4 98591 1nb9A 147 5.45e+01 b.43.5.1 85515 1kgnA 329 5.65e+01 a.25.1.2 68584 1bdb 277 5.65e+01 1bdb c.2.1.2 29874 1ek6A 348 5.66e+01 1xel c.2.1.2 29800 1bvyF 191 5.68e+01 1bvyF c.23.5.1 31207 1jmkC 230 5.70e+01 c.69.1.22 71747 2bkxA 242 5.73e+01 1v3yA 192 5.74e+01 2f6kA 307 5.75e+01 1iukA 140 5.79e+01 c.2.1.8 83712 1ozhA 566 5.79e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1csn 298 5.80e+01 1csn d.144.1.7 41664 1vhqA 232 5.81e+01 c.23.16.2 100696 1vknA 351 5.82e+01 c.2.1.3,d.81.1.1 108676,108677 1t5bA 201 5.82e+01 c.23.5.3 106433 1dl5A 317 5.83e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1o20A 427 5.85e+01 c.82.1.1 86556 1t0aA 159 5.87e+01 1umdB 324 5.88e+01 c.36.1.7,c.48.1.2 99600,99601 1wy1A 172 5.89e+01 1nmeA 146 5.89e+01 c.17.1.1 85874 1k4nA 192 5.92e+01 d.32.1.5 72059 1cozA 129 6.14e+01 1cozA c.26.1.2 31598 1a12A 413 6.14e+01 1a12A b.69.5.1 27663 1u9iA 519 6.19e+01 1y7lA 316 6.22e+01 1u2eA 289 6.22e+01 1ga8A 311 6.23e+01 1ga8A c.68.1.4 34516 1x8gA 227 6.27e+01 1mrzA 293 6.29e+01 b.43.5.1,c.26.1.3 91452,91453 2etxA 209 6.33e+01 1ekjA 221 6.35e+01 1ekjB c.53.2.1 33364 1x8hA 228 6.37e+01 1w78A 422 6.37e+01 1x3eA 165 6.42e+01 1erv 105 6.44e+01 1erv c.47.1.1 32743 1fkmA 396 6.46e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1flcB 175 6.47e+01 1flcB h.3.1.1 45716 1jztA 246 6.54e+01 c.104.1.1 63319 1w2iA 91 6.54e+01 d.58.10.1 109127 1ykwA 435 6.57e+01 1oa2A 218 6.57e+01 b.29.1.11 86721 1zroA 602 6.58e+01 1e4cP 215 6.62e+01 2fua c.74.1.1 34969 1xo7A 166 6.64e+01 2a65A 519 6.71e+01 1dgnA 89 6.71e+01 1dgnA a.77.1.3 18436 1meoA 209 6.72e+01 c.65.1.1 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