Best Alignments for T0321

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vpdA/T0321-1vpdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vpdA/T0321-1vpdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6491e-022.92e-17
1rcuA/T0321-1rcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rcuA/T0321-1rcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0079e-022.21e-19 c.129.1.1
1v8bA/T0321-1v8bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v8bA/T0321-1v8bA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1966e-027.61e-19
1o4sA/T0321-1o4sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o4sA/T0321-1o4sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0269e-014.42e-23 c.67.1.1
1vmeA/T0321-1vmeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vmeA/T0321-1vmeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0343e-013.13e-26 c.23.5.1
d.157.1.3
1wwkA/T0321-1wwkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wwkA/T0321-1wwkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5489e-012.99e-16
1qmgA/T0321-1qmgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qmgA/T0321-1qmgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6761e-011.42e-17 1qmgA a.100.1.2
c.2.1.6
1xdwA/T0321-1xdwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xdwA/T0321-1xdwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9004e-012.08e-14
1pjqA/T0321-1pjqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pjqA/T0321-1pjqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0838e-015.48e-16 c.2.1.11
c.90.1.1
e.37.1.1
2ffjA/T0321-2ffjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ffjA/T0321-2ffjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4633e-011.12e-17

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001