# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1neiA 60 1.27e-01 d.253.1.1 91843 1guqA 348 4.15e-01 1guqA d.13.1.2,d.13.1.2 37522,37523 1hxpA 348 4.61e-01 1guqA d.13.1.2,d.13.1.2 37530,37531 1gupA 348 4.62e-01 1guqA d.13.1.2,d.13.1.2 37534,37535 1ituA 369 1.45e+00 c.1.9.7 71423 2al6A 375 4.51e+00 1jtdB 273 4.67e+00 b.69.5.2 67265 1yixA 265 4.73e+00 1wj7A 104 6.74e+00 2aehA 369 6.88e+00 2cioA 212 6.94e+00 2avtA 378 7.03e+00 1khqA 212 7.14e+00 d.3.1.1 90964 9pap 212 7.15e+00 1cs8A d.3.1.1 37006 1ppn 212 7.28e+00 1cs8A d.3.1.1 37004 1rlzA 369 7.49e+00 c.31.1.1 104989 2awaA 390 8.02e+00 1ehaA 558 9.36e+00 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 1dhs 344 9.38e+00 1dhs c.31.1.1 31727 1hxiA 121 9.51e+00 1hxiA a.118.8.1 61366 1vquA 374 9.89e+00 1uteA 313 1.00e+01 1uteA d.159.1.1 42078 1p0hA 318 1.06e+01 d.108.1.1 93866 1v8gA 329 1.06e+01 a.46.2.1,c.27.1.1 100505,100506 1v9nA 360 1.11e+01 1g99A 408 1.14e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1e3pA 757 1.14e+01 1e3hA a.4.9.1,b.40.4.5,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16258,25328,37574,37575,38811,40697,40698 1vbuA 328 1.18e+01 1x3mA 415 1.20e+01 1xpjA 126 1.23e+01 1eh9A 558 1.24e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1pujA 282 1.31e+01 c.37.1.8 88294 1wyuB 474 1.37e+01 1oo4A 111 1.39e+01 d.93.1.1 87185 1yn8A 59 1.39e+01 1th1C 179 1.42e+01 2c27A 315 1.42e+01 1kjqA 391 1.46e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2fdbM 164 1.51e+01 1ez1A 392 1.52e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1eyzA 392 1.54e+01 1ez1A b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1vzoA 355 1.58e+01 d.144.1.7 108971 1z96A 40 1.69e+01 1s7iA 124 1.79e+01 d.58.4.9 105353 1xat 212 1.81e+01 2xat b.81.1.3 28059 1rwrA 301 1.82e+01 b.80.1.11 97990 2xat 212 1.82e+01 2xat b.81.1.3 28058 1a12A 413 1.85e+01 1a12A b.69.5.1 27663 1pzlA 237 1.85e+01 a.123.1.1 104393 1v3vA 333 1.90e+01 b.35.1.2,c.2.1.1 108345,108346 1eu1A 780 1.92e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1h6kZ 98 1.97e+01 d.58.7.1 60686 1hl8A 449 2.02e+01 b.71.1.3,c.1.8.11 90646,90647 2c2aA 258 2.07e+01 1hl9A 449 2.08e+01 b.71.1.3,c.1.8.11 90650,90651 1u59A 287 2.09e+01 d.144.1.7 107681 1xnpA 202 2.27e+01 1udg 244 2.28e+01 3eugA c.18.1.1 31016 1udh 244 2.30e+01 3eugA c.18.1.1 31015 1sxvA 172 2.32e+01 1wp1A 474 2.36e+01 1axn 323 2.41e+01 1avc a.65.1.1 18149 1bw0A 416 2.41e+01 1bw0A c.67.1.1 34385 1hjxA 362 2.48e+01 c.1.8.5,d.26.3.1 83512,83513 1fsz 372 2.63e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1u8vA 490 2.67e+01 1agrE 205 2.82e+01 1agrE a.91.1.1 18538 2axwA 134 2.92e+01 1azsB 212 2.92e+01 1azsA d.58.29.1 39423 1g26A 31 2.99e+01 1g26A g.3.16.1 44381 1khoA 370 3.00e+01 a.124.1.1,b.12.1.3 72489,72490 1u8zA 168 3.02e+01 1h6kX 97 3.02e+01 d.58.7.1 60684 1woyA 500 3.02e+01 1aii 323 3.03e+01 1avc a.65.1.1 18150 1li5A 461 3.11e+01 a.27.1.1,c.26.1.1 73912,73913 1s5dA 240 3.15e+01 d.166.1.1 98541 1li5B 461 3.18e+01 a.27.1.1,c.26.1.1 73914,73915 1nj4A 363 3.51e+01 b.105.1.1,e.3.1.1 80545,80546 1ok7A 366 3.55e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1nzoA 363 3.63e+01 b.105.1.1,e.3.1.1 92383,92384 1bfeA 119 3.72e+01 1pdr b.36.1.1 24775 2ajrA 331 3.76e+01 1akn 579 3.76e+01 2bce c.69.1.1 34626 1qs0A 407 3.76e+01 1qs0A c.36.1.11 31829 2a84A 300 3.78e+01 2bzpA 226 3.79e+01 1axdA 209 3.82e+01 1gnwA a.45.1.1,c.47.1.5 17730,33024 2polA 366 3.87e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1u2xA 474 3.88e+01 c.72.1.3 107622 1e3hA 757 3.88e+01 1e3hA a.4.9.1,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16257,37572,37573,38810,40695,40696 1cm7A 363 3.89e+01 1cnzA c.77.1.1 35063 1ijtA 128 3.93e+01 1bfg b.42.1.1 62510 1pinA 163 3.94e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1ybxA 143 4.08e+01 2azpA 318 4.12e+01 1tp5A 119 4.13e+01 1h2vZ 156 4.14e+01 d.58.7.1 76595 1u2eA 289 4.19e+01 1z6fA 363 4.20e+01 1dvh 79 4.21e+01 1c53 a.3.1.1 15802 1hd8A 363 4.21e+01 b.105.1.1,e.3.1.1 65803,65804 2fu4A 83 4.25e+01 1j8bA 112 4.27e+01 d.222.1.1 77101 2irfG 113 4.33e+01 2irfG a.4.5.23 16185 1yhvA 297 4.35e+01 3nodB 423 4.49e+01 1nseA d.174.1.1 42513 1mopA 300 4.59e+01 c.26.1.4 85035 1n2eA 300 4.63e+01 c.26.1.4 85268 1buuA 168 4.69e+01 1rtm1 d.169.1.1,h.1.1.1 42366,45388 1i4jA 110 4.71e+01 d.55.1.1 76734 1fdd 106 4.76e+01 1a6l d.58.1.2 38960 1pgl2 370 4.79e+01 1qfcA 306 4.79e+01 1uteA d.159.1.1 42077 1mmiA 366 4.91e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1ta0A 197 4.98e+01 c.108.1.16 106729 1a8h 500 5.04e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1n0qA 93 5.08e+01 k.37.1.1 79754 1be9A 119 5.11e+01 1pdr b.36.1.1 24774 1h0xA 100 5.18e+01 d.68.6.1 76451 1qadA 111 5.29e+01 1qadA d.93.1.1 40498 1ciqA 40 5.29e+01 2sniI d.40.1.1 38576 1e1xA 299 5.32e+01 1hcl d.144.1.7 59157 2gwgA 350 5.33e+01 1zkkA 167 5.36e+01 1jfmA 174 5.37e+01 d.19.1.1 66640 1oqyA 368 5.39e+01 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1pdr 99 5.42e+01 1pdr b.36.1.1 24771 1tufA 434 5.49e+01 b.49.2.3,c.1.6.1 107335,107336 1gngX 39 5.53e+01 1ji2A 585 5.57e+01 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 2bkyA 97 5.63e+01 1ac5 483 5.76e+01 1ac5 c.69.1.5 34653 1agp 166 5.85e+01 1ctqA c.37.1.8 31985 1hyeA 313 5.87e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1griA 217 5.87e+01 1griA b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1bvzA 585 5.94e+01 1bvzA b.1.18.2,b.71.1.1,c.1.8.1 21856,27783,28770 1hcl 298 6.03e+01 1hcl d.144.1.7 41593 1dnpA 471 6.04e+01 1qnf a.99.1.1,c.28.1.1 18775,31630 1ea2A 131 6.10e+01 d.17.4.3 64860 1eucA 311 6.13e+01 2scuA c.2.1.8,c.23.4.1 30311,31139 2dvh 79 6.15e+01 1c53 a.3.1.1 15803 1h9oA 112 6.16e+01 1qadA d.93.1.1 60837 1w2lA 99 6.18e+01 1s12A 94 6.23e+01 2bv2A 83 6.28e+01 1v30A 124 6.35e+01 1ivnA 190 6.38e+01 c.23.10.5 83719 1gz8A 299 6.40e+01 d.144.1.7 83405 1el6A 219 6.45e+01 1el6B d.182.1.1 42606 1dmmA 131 6.51e+01 1opy d.17.4.3 38114 5p21 166 6.54e+01 1ctqA c.37.1.8 31966 2f2gA 221 6.57e+01 2a9kA 187 6.63e+01 1flzA 228 6.63e+01 3eugA c.18.1.1 31027 1q4mA 221 6.63e+01 a.132.1.3 95805 1wr2A 238 6.66e+01 1np7A 489 6.67e+01 a.99.1.1,c.28.1.1 80677,80678 1wdvA 152 6.73e+01 1ehiA 377 6.81e+01 1iow c.30.1.2,d.142.1.1 31716,41484 2ewcA 126 7.18e+01 1o0iA 138 7.27e+01 d.38.1.5 86532 1kvnA 104 7.28e+01 d.201.1.1 73066 1bs9 207 7.29e+01 1bs9 c.69.1.30 31330 1g66A 207 7.29e+01 1bs9 c.69.1.30 31329 1cyw 205 7.34e+01 1cyx b.6.1.2 23024 1xbbA 291 7.44e+01 1rtm1 149 7.46e+01 1rtm1 1el6B 219 7.52e+01 1el6B d.182.1.1 42607 1bmv2 374 7.57e+01 1bmv2 1cyx 205 7.62e+01 1cyx b.6.1.2 23023 1twiA 434 7.81e+01 b.49.2.3,c.1.6.1 107399,107400 821p 166 7.97e+01 1ctqA c.37.1.8 31969 2fpqA 444 7.98e+01 2fwkA 121 8.04e+01 1awcA 110 8.15e+01 1awcA a.4.5.21 16167 2fuvA 549 8.19e+01 1jvpP 298 8.21e+01 d.144.1.7 67371 1vr6A 350 8.23e+01 1r6fA 310 8.25e+01 e.46.1.1 97149 1aqlA 532 8.39e+01 2bce c.69.1.1 34627 1ko9A 345 8.39e+01 a.96.1.3,d.129.1.2 68717,68718 1opjA 293 8.42e+01 d.144.1.7 87230 1icwA 72 8.45e+01 1tvxA d.9.1.1 37357 1zq4A 693 8.45e+01 1qxoA 388 8.50e+01 d.258.1.1 96539 3il8 72 8.58e+01 1tvxA d.9.1.1 37356 1ctqA 166 8.66e+01 1ctqA c.37.1.8 31965 2c9aA 259 8.82e+01 1x6zA 123 8.82e+01 1u5pA 216 8.85e+01 2evwX 166 8.89e+01