# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1w6kA 732 2.41e+00 1jjoC 261 3.66e+00 1r7mA 235 4.23e+00 2a6aA 218 5.77e+00 2def 147 7.04e+00 1bs4A d.167.1.1 42305 1u8vA 490 7.59e+00 1cyj 90 9.19e+00 1ctj a.3.1.1 15805 1udh 244 9.31e+00 3eugA c.18.1.1 31015 1cyi 90 9.64e+00 1ctj a.3.1.1 15804 1udg 244 1.06e+01 3eugA c.18.1.1 31016 1uch 230 1.29e+01 1uch d.3.1.6 37129 1ycdA 243 1.31e+01 1gdvA 85 1.39e+01 1ctj a.3.1.1 60458 1g7fA 298 1.42e+01 1pty c.45.1.2 60330 2xat 212 1.46e+01 2xat b.81.1.3 28058 1x6vA 630 1.47e+01 1d3hA 367 1.54e+01 1d3gA c.1.4.1 28601 1ptvA 321 1.55e+01 1pty c.45.1.2 32665 1xat 212 1.58e+01 2xat b.81.1.3 28059 2gk4A 232 1.66e+01 1aax 321 1.71e+01 1pty c.45.1.2 32657 2f71A 298 1.81e+01 1a5y 330 1.83e+01 1pty c.45.1.2 32673 1pa1A 310 1.85e+01 c.45.1.2 94404 1zuwA 272 1.86e+01 1r0kA 388 1.87e+01 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1d3gA 367 1.91e+01 1d3gA c.1.4.1 28600 2hnp 321 1.92e+01 1pty c.45.1.2 32678 1qopA 268 1.96e+01 2tysA c.1.2.4 28570 1pty 321 2.03e+01 1pty c.45.1.2 32656 1b43A 340 2.06e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1vl8A 267 2.11e+01 c.2.1.2 108733 2ax4A 198 2.25e+01 1eeoA 321 2.27e+01 1pty c.45.1.2 32655 1sffA 426 2.28e+01 c.67.1.4 105482 1iygA 133 2.32e+01 a.118.8.1 76947 1g2aA 168 2.37e+01 d.167.1.1 65109 1zyeA 220 2.42e+01 1r2rA 248 2.47e+01 c.1.1.1 96875 1xd3A 230 2.48e+01 1xhkA 187 2.51e+01 2b0mA 393 2.66e+01 2gwgA 350 2.72e+01 2c2xA 281 2.80e+01 1akz 223 2.86e+01 3eugA c.18.1.1 31007 2a5hA 416 2.87e+01 1tph1 247 3.01e+01 1amk 1asx 159 3.04e+01 1a6dA c.8.5.2 30821 1bwzA 274 3.05e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 2booA 247 3.13e+01 1vjpA 394 3.17e+01 c.2.1.3,d.81.1.3 100828,100829 2gkeA 274 3.26e+01 1etpA 190 3.79e+01 1etpA a.3.1.4,a.3.1.4 15962,15963 1v73A 342 3.86e+01 1rlr 761 3.86e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 2bsjA 133 3.87e+01 1y6hA 177 3.97e+01 1gqzA 274 4.10e+01 d.21.1.1,d.21.1.1 83311,83312 1cch 82 4.18e+01 451c a.3.1.1 15902 3eugA 229 4.27e+01 3eugA c.18.1.1 31018 1xeoA 168 4.29e+01 1guzA 310 4.29e+01 c.2.1.5,d.162.1.1 65586,65587 1bsjA 168 4.33e+01 1bs4A d.167.1.1 42302 1xiuA 230 4.38e+01 1e3dA 266 4.41e+01 2frvA e.19.1.1 59188 1m70A 190 4.42e+01 a.3.1.4,a.3.1.4 91200,91201 1eugA 229 4.45e+01 3eugA c.18.1.1 31021 1ass 159 4.57e+01 1a6dA c.8.5.2 30818 1x9mA 698 4.58e+01 1euiA 228 4.78e+01 3eugA c.18.1.1 31028 1u1iA 392 4.88e+01 c.2.1.3,d.81.1.3 107582,107583 1jtdB 273 4.94e+01 b.69.5.2 67265 1ii5A 233 5.08e+01 c.94.1.1 62412 1flzA 228 5.11e+01 3eugA c.18.1.1 31027 4eugA 229 5.11e+01 3eugA c.18.1.1 31019 1zxzA 197 5.14e+01 1ovqA 138 5.26e+01 c.55.3.8 93607 1rd5A 262 5.39e+01 1vbuA 328 5.43e+01 1rt8A 513 5.55e+01 a.40.1.1 105095 1vkwA 218 5.57e+01 d.90.1.2 108695 1aizA 129 5.58e+01 1nwpA b.6.1.1 22903 1rwrA 301 5.60e+01 b.80.1.11 97990 1cmxA 236 5.64e+01 1uch d.3.1.6 37130 1zwwA 256 5.65e+01 1ujpA 271 5.68e+01 c.1.2.4 99462 1pujA 282 5.76e+01 c.37.1.8 88294 2rmcA 182 5.76e+01 2cpl b.62.1.1 27491 1eu1A 780 5.78e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1wdvA 152 5.85e+01 2bogX 286 5.90e+01 1iiwA 232 6.09e+01 c.94.1.1 62461 2fjbA 643 6.11e+01 1aa7A 158 6.14e+01 1aa7A a.95.1.1 18741 1azcA 129 6.20e+01 1nwpA b.6.1.1 22899 1icjA 168 6.29e+01 1bs4A d.167.1.1 42284 1bs4A 168 6.29e+01 1bs4A d.167.1.1 42287 1sspE 223 6.47e+01 3eugA c.18.1.1 31009 1imdA 277 6.50e+01 1imbA e.7.1.1 42968 1jnrA 643 6.94e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1vhxA 150 6.95e+01 c.55.3.8 100712 1pdr 99 7.09e+01 1pdr b.36.1.1 24771 1ti6A 875 7.14e+01 b.52.2.2,c.81.1.1 106974,106975 1sjdA 368 7.16e+01 c.1.11.2,d.54.1.1 105632,105633 1vggA 161 7.24e+01 2bpqA 373 7.26e+01 1zy1B 197 7.38e+01 1b1yA 500 7.42e+01 1byb c.1.8.1 28796 2hhmA 276 7.56e+01 1imbA e.7.1.1 42955 1ys4A 354 7.73e+01 1gw1A 376 7.82e+01 c.1.8.3 76361 1ayg 80 7.84e+01 451c a.3.1.1 15831 1xo7A 166 7.94e+01 1tml 286 7.94e+01 1tml c.6.1.1 30656 1rvgA 305 8.03e+01 c.1.10.2 97920 2c9aA 259 8.07e+01 1nznA 126 8.07e+01 a.118.8.1 92382 1ws9A 387 8.10e+01 2bodX 286 8.19e+01 1bucA 383 8.26e+01 3mdeA a.29.3.1,e.6.1.1 16590,42851 1l5jA 865 8.29e+01 a.118.15.1,c.8.2.1,c.83.1.1 73592,73593,73594 2axoA 270 8.41e+01 1imbA 277 8.47e+01 1imbA e.7.1.1 42957 1t7pA 698 8.49e+01 1t7pA c.55.3.5,e.8.1.1 33712,43005 1d6jA 211 8.51e+01 1d6jA c.37.1.4 31940 1cor 82 8.63e+01 451c a.3.1.1 15903 1odzA 386 8.66e+01 c.1.8.3 86889 2bw0A 329 8.68e+01 1o5xA 248 8.73e+01 c.1.1.1 92528 1n5nA 180 8.74e+01 d.167.1.1 85336 1vk9A 151 8.81e+01 c.139.1.1 108640 1vk8A 106 8.89e+01 d.58.48.1 108636 1tvlA 454 8.89e+01 c.1.16.4 107366 1def 147 8.91e+01 1bs4A d.167.1.1 42306