# List of top-scoring protein chains for T0321.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2au1A 292 3.53e+00 1y08A 323 3.54e+00 2avwA 311 3.55e+00 1wy6A 172 5.34e+00 1tx2A 297 5.48e+00 c.1.21.1 107420 1neiA 60 5.88e+00 d.253.1.1 91843 1d1sA 373 6.51e+00 2ohxA b.35.1.2,c.2.1.1 24727,29743 1d1tA 373 6.51e+00 2ohxA b.35.1.2,c.2.1.1 24719,29735 1pryA 227 7.37e+00 c.66.1.3 95063 2fjbA 643 9.03e+00 1jnrA 643 9.11e+00 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1ad1A 266 9.21e+00 1aj2 c.1.21.1 29668 1eyeA 280 1.05e+01 1aj2 c.1.21.1 29672 1sjdA 368 1.19e+01 c.1.11.2,d.54.1.1 105632,105633 1flcB 175 1.37e+01 1flcB h.3.1.1 45716 1dgnA 89 1.71e+01 1dgnA a.77.1.3 18436 2bmbA 545 1.88e+01 1tp5A 119 1.91e+01 2ckgA 225 1.96e+01 1g3oA 106 1.98e+01 1a6l d.58.1.2 38959 1mioA 533 2.17e+01 1qguA c.92.2.3 35601 2fz4A 237 2.25e+01 1oo3A 111 2.31e+01 d.93.1.1 87184 2govA 195 2.38e+01 1qlaA 656 2.49e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 16328,30427,42310 1jf2A 195 2.65e+01 1ej3A a.39.1.5 62930 1yobA 179 2.66e+01 1s7zA 117 2.69e+01 a.159.3.1 98715 1u2zA 433 2.74e+01 c.66.1.31 107626 1mdaL 121 2.87e+01 2bbkL g.21.1.1 44885 1twiA 434 3.02e+01 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 3.03e+01 b.49.2.3,c.1.6.1 107335,107336 1tcwA 99 3.08e+01 1fmb b.50.1.1 26760 1az5 99 3.09e+01 1hvc b.50.1.1 26747 2sam 99 3.09e+01 1fmb b.50.1.1 26755 2c27A 315 3.18e+01 1p0hA 318 3.19e+01 d.108.1.1 93866 1sip 99 3.20e+01 1fmb b.50.1.1 26757 1e7pG 655 3.24e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 59359,59360,59361 2bs3A 656 3.24e+01 1g8aA 227 3.67e+01 c.66.1.3 90506 1be9A 119 3.70e+01 1pdr b.36.1.1 24774 1au7A 146 3.99e+01 1au7A a.4.1.1,a.35.1.1 15995,17021 1hjxA 362 4.00e+01 c.1.8.5,d.26.3.1 83512,83513 1ubx 367 4.05e+01 1uby a.128.1.1 19439 1s16A 390 4.06e+01 d.14.1.3,d.122.1.2 98331,98332 1jjoC 261 4.08e+01 1k1uA 99 4.16e+01 b.50.1.1 71997 1dazC 99 4.17e+01 1hvc b.50.1.1 26501 2axwA 134 4.20e+01 1qv1A 195 4.29e+01 a.39.1.5 96347 1sl7A 195 4.32e+01 1el4A 195 4.34e+01 1ej3A a.39.1.5 59453 2f8pA 195 4.35e+01 1x87A 551 4.36e+01 1mzrA 296 4.42e+01 c.1.7.1 91500 1i2mB 402 4.48e+01 1a12A b.69.5.1 61569 1k1tA 99 4.49e+01 b.50.1.1 71995 1v30A 124 4.55e+01 1g26A 31 4.62e+01 1g26A g.3.16.1 44381 1bswA 197 4.77e+01 1atlA d.92.1.9 40329 1budA 197 4.84e+01 1atlA d.92.1.9 40328 1fu5A 111 4.88e+01 1qadA d.93.1.1 40505 2gwgA 350 5.08e+01 1wvqA 167 5.08e+01 1uby 367 5.16e+01 1uby a.128.1.1 19435 1a12A 413 5.25e+01 1a12A b.69.5.1 27663 2gn4A 344 5.39e+01 3cms 323 5.42e+01 1smrA b.50.1.2 26865 1ziuA 370 5.46e+01 2fug6 181 5.51e+01 1djlA 207 5.56e+01 1d4oA c.31.1.4 31746 1qfxA 460 5.72e+01 1qfxA c.60.1.2 33994 1wufA 393 5.75e+01 1an7A 136 5.90e+01 1seiA d.140.1.1 41465 1fjgH 138 5.91e+01 1seiA d.140.1.1 41468 1mc8A 343 6.08e+01 a.60.7.1,c.120.1.2 78945,78946 1nwwA 149 6.24e+01 d.17.4.8 86306 1nu3A 149 6.24e+01 d.17.4.8 86170 2visC 282 6.36e+01 1hgeA b.19.1.2 23807 1paqA 189 6.38e+01 a.118.1.14 94413 1u8vA 490 6.45e+01 1atnD 260 6.46e+01 3dni d.151.1.1 41793 1l7yA 94 6.48e+01 d.15.1.6 73676 1h1aA 191 6.64e+01 b.29.1.11 83450 1ghc 75 6.66e+01 1hstA a.4.5.13 16142 1xnkA 196 6.75e+01 1frl 106 7.13e+01 1a6l d.58.1.2 38976 1r6eA 168 7.14e+01 a.168.1.1 104821 1to6A 371 7.16e+01 c.141.1.1 107170 4tmkA 213 7.18e+01 5tmpA c.37.1.1 31930 1wxrA 1048 7.23e+01 1r9kA 172 7.24e+01 a.168.1.1 104869 1k9vF 201 7.30e+01 c.23.16.1 68365 2c72A 520 7.31e+01 1fx0A 507 7.40e+01 a.69.1.1,b.49.1.1,c.37.1.11 60080,60081,60082 2avnA 260 7.42e+01 1kxjA 205 7.56e+01 c.23.16.1 73153 1vcfA 332 7.61e+01 2vitC 282 7.69e+01 1hgeA b.19.1.2 23808 1x0rA 249 8.02e+01 2cv4A 250 8.08e+01 2def 147 8.15e+01 1bs4A d.167.1.1 42305 1def 147 8.18e+01 1bs4A d.167.1.1 42306 1r1hA 696 8.18e+01 d.92.1.4 104756 1p97A 114 8.25e+01 d.110.3.7 94382 2viuA 328 8.25e+01 1hgeA b.19.1.2 23797 1s3eA 520 8.25e+01 c.3.1.2,d.16.1.5 98426,98427 1ie9A 259 8.35e+01 1db1A a.123.1.1 62318 1i9sA 210 8.39e+01 1i9sA c.45.1.1 62099 1txiA 263 8.39e+01 2c76A 520 8.40e+01 1vz0A 230 8.51e+01 a.4.14.1,d.268.1.1 108929,108930 1jr9A 202 8.52e+01 a.2.11.1,d.44.1.1 71822,71823 2gshA 414 8.64e+01 2bk5A 520 8.68e+01 1a5fH 217 8.78e+01 1igtB b.1.1.1,b.1.1.2 20303,21295 2hmgA 328 8.95e+01 1hgeA b.19.1.2 23828 1frj 106 8.96e+01 1a6l d.58.1.2 38969 1ep1B 261 8.98e+01 1ep2B b.43.4.2,c.25.1.3 25665,31555