# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sjdA 368 2.93e-01 c.1.11.2,d.54.1.1 105632,105633 1g26A 31 4.43e-01 1g26A g.3.16.1 44381 2d4rA 147 8.09e-01 1p0hA 318 1.22e+00 d.108.1.1 93866 1mgtA 174 1.50e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 2cqsA 842 1.55e+00 1rlzA 369 1.83e+00 c.31.1.1 104989 1mugA 168 1.90e+00 1mugA c.18.1.2 31030 1a12A 413 1.92e+00 1a12A b.69.5.1 27663 1jetA 517 2.08e+00 1jevA c.94.1.1 35718 1wyuB 474 2.40e+00 1nm8A 616 2.96e+00 c.43.1.3,c.43.1.3 85872,85873 1vkcA 158 3.35e+00 1qhtA 775 3.36e+00 1tgoA c.55.3.5,e.8.1.1 33722,43011 1gz8A 299 3.44e+00 d.144.1.7 83405 1neiA 60 3.56e+00 d.253.1.1 91843 1s68A 249 3.65e+00 d.142.2.4 98591 2c27A 315 3.66e+00 1r9kA 172 4.05e+00 a.168.1.1 104869 1yn8A 59 4.26e+00 1s7iA 124 4.49e+00 d.58.4.9 105353 1vquA 374 4.67e+00 1twuA 139 5.21e+00 d.32.1.8 107413 1s7zA 117 5.21e+00 a.159.3.1 98715 1guqA 348 5.33e+00 1guqA d.13.1.2,d.13.1.2 37522,37523 2bv2A 83 5.49e+00 1t6eX 381 5.92e+00 b.50.1.2 106564 1i4jA 110 6.58e+00 d.55.1.1 76734 2au5A 139 6.82e+00 1ew6A 137 7.07e+00 1ewaA a.1.1.2 15637 1pyaB 228 7.14e+00 1pyaB 1hxiA 121 7.52e+00 1hxiA a.118.8.1 61366 1fc6A 388 8.77e+00 1fc6A b.36.1.3,c.14.1.2 64738,64739 2fymA 431 8.95e+00 1cyx 205 8.96e+00 1cyx b.6.1.2 23023 2dcnA 311 9.13e+00 1v54G 85 1.01e+01 f.23.2.1 100328 2bkyA 97 1.06e+01 1n8vA 112 1.07e+01 a.118.21.1 85457 1sxvA 172 1.20e+01 2b1xA 470 1.22e+01 1jtdB 273 1.22e+01 b.69.5.2 67265 1p4oA 322 1.44e+01 d.144.1.7 87775 1c7qA 445 1.46e+01 2pgi c.80.1.2 35307 1jl0A 334 1.52e+01 1jenA d.156.1.1 63155 1xd8A 289 1.57e+01 1axn 323 1.60e+01 1avc a.65.1.1 18149 1k24A 253 1.66e+01 f.4.4.2 72002 1b65A 375 1.70e+01 1b65A d.154.1.1 42020 1paqA 189 1.74e+01 a.118.1.14 94413 1rwrA 301 1.97e+01 b.80.1.11 97990 2bhvA 246 2.00e+01 1li5A 461 2.04e+01 a.27.1.1,c.26.1.1 73912,73913 2cu6A 103 2.09e+01 1ehiA 377 2.15e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1tkkA 366 2.18e+01 c.1.11.2,d.54.1.1 107089,107090 1ykdA 398 2.19e+01 1ybzA 91 2.19e+01 1d0qA 103 2.37e+01 1d0qA g.41.3.2 45208 1zc6A 305 2.38e+01 1kaeA 434 2.39e+01 c.82.1.2 72247 1womA 271 2.40e+01 1wxrA 1048 2.44e+01 2axwA 134 2.51e+01 1gzsB 165 2.63e+01 a.168.1.1 76425 1pgl2 370 2.75e+01 1xzzA 246 2.80e+01 1wy6A 172 2.82e+01 1u59A 287 2.93e+01 d.144.1.7 107681 1t0bA 252 2.97e+01 c.23.16.6 106199 1x65A 89 3.00e+01 1q15A 503 3.12e+01 c.26.2.1,d.153.1.1 95538,95539 1vzoA 355 3.14e+01 d.144.1.7 108971 1eny 268 3.15e+01 1eny c.2.1.2 29910 1p2xA 159 3.16e+01 a.40.1.1 104062 1chuA 540 3.17e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 7fd1A 106 3.18e+01 1a6l d.58.1.2 38953 1wdtA 665 3.22e+01 1uayA 242 3.34e+01 c.2.1.2 88390 1r0mA 375 3.38e+01 c.1.11.2,d.54.1.1 104747,104748 1qi9A 556 3.43e+01 1qhbA a.111.1.2 19053 1vkdA 338 3.44e+01 b.67.2.4 108644 2aq8A 269 3.49e+01 1t61C 227 3.49e+01 d.169.1.6,d.169.1.6 106533,106534 1wr2A 238 3.56e+01 1pzgA 331 3.57e+01 c.2.1.5,d.162.1.1 95425,95426 1pp7U 131 3.59e+01 a.4.5.44 94973 2ghjA 118 3.59e+01 2gmyA 153 3.65e+01 1w2lA 99 3.69e+01 2ajrA 331 3.70e+01 1prxA 224 3.74e+01 1prxA c.47.1.10 33076 1cpcA 162 3.80e+01 1cpcA a.1.1.3 15643 1rwzA 245 3.89e+01 d.131.1.2,d.131.1.2 98005,98006 1edqA 540 3.91e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1pinA 163 3.96e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1r6wA 322 3.97e+01 c.1.11.2,d.54.1.1 97165,97166 1xqoA 256 3.97e+01 1iioA 84 4.09e+01 a.39.4.1 66150 1s12A 94 4.10e+01 1sgoA 139 4.16e+01 d.82.3.1 98857 1vbvA 105 4.16e+01 2ddrA 306 4.18e+01 2bkyX 89 4.29e+01 2au3A 407 4.36e+01 2fwkA 121 4.48e+01 1wdvA 152 4.60e+01 1nu5A 370 4.66e+01 c.1.11.2,d.54.1.1 92183,92184 1qo7A 394 4.81e+01 1qo7A c.69.1.11 34697 1zmmA 33 4.83e+01 1wqwA 235 4.93e+01 1amf 233 4.95e+01 1wod c.94.1.1 35833 1twiA 434 5.01e+01 b.49.2.3,c.1.6.1 107399,107400 2f4nA 273 5.12e+01 1zkiA 133 5.12e+01 1uwkA 557 5.17e+01 e.51.1.1 108065 2gcuA 245 5.20e+01 1rqwA 207 5.25e+01 b.25.1.1 97781 1iicA 422 5.27e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1wba 175 5.31e+01 1wba b.42.4.1 25591 1qnrA 344 5.33e+01 1qnoA c.1.8.3 28834 1lldA 319 5.36e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 2aioA 269 5.37e+01 1iznB 277 5.37e+01 e.43.1.2 83848 1uz3A 102 5.50e+01 4tmkA 213 5.55e+01 5tmpA c.37.1.1 31930 1hh1A 143 5.57e+01 1gefA c.52.1.18 61036 1lnsA 763 5.71e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1mucA 373 5.74e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1tn3 137 5.82e+01 1htn d.169.1.1 42423 1rvkA 382 5.88e+01 c.1.11.2,d.54.1.1 97928,97929 1to2I 64 5.89e+01 1u8vA 490 5.91e+01 2c1iA 431 5.92e+01 1xm9A 457 6.06e+01 1hgxA 183 6.14e+01 1tc1A c.61.1.1 34027 1el5A 389 6.22e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1qv1A 195 6.26e+01 a.39.1.5 96347 1winA 143 6.27e+01 1ecmA 109 6.44e+01 1ecmA a.130.1.1 19492 2brqA 97 6.50e+01 2cwlA 302 6.55e+01 1jidA 128 6.59e+01 d.201.1.1 66735 1wvqA 167 6.67e+01 1kb9D 246 6.76e+01 a.3.1.3,f.23.11.1 77317,77318 1i07A 60 6.84e+01 1aojA b.34.2.1 61477 2ct7A 86 6.85e+01 1eceA 358 6.87e+01 1eceA c.1.8.3 28813 1k1vA 41 6.98e+01 a.37.1.1 71999 1dqaA 467 7.10e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 1kllA 130 7.10e+01 d.32.1.2 72720 1qxyA 252 7.13e+01 d.127.1.1 96565 1x3mA 415 7.21e+01 2af6A 258 7.21e+01 1zyiA 171 7.35e+01 1vggA 161 7.37e+01 2azpA 318 7.40e+01 1wwiA 148 7.72e+01 1g5bA 221 7.78e+01 1g5bA d.159.1.3 60261 1vlaA 150 7.78e+01 d.227.1.2 108735 1sg6A 393 7.80e+01 e.22.1.1 105522 1ok7A 366 7.86e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 2aq6A 147 7.88e+01 1bco 327 7.92e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1mv8A 436 8.04e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1h6kZ 98 8.15e+01 d.58.7.1 60686 1on3A 523 8.21e+01 c.14.1.4,c.14.1.4 87107,87108 1pz1A 333 8.24e+01 c.1.7.1 95390 1nszA 347 8.25e+01 b.30.5.4 80724 1ec7A 446 8.31e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1vhwA 253 8.36e+01 c.56.2.1 100706 1gl2B 65 8.46e+01 h.1.15.1 65279 1r9cA 139 8.57e+01 d.32.1.2 97255 1y4tA 322 8.57e+01 2g8lA 299 8.57e+01 1ruwA 69 8.58e+01 1w8oA 601 8.67e+01 1pu1A 94 8.69e+01 d.266.1.1 104307 1zo0A 126 8.71e+01 1kb9A 431 8.77e+01 d.185.1.1,d.185.1.1 77311,77312 1jd5A 124 8.78e+01 g.52.1.1 66544 1eh8A 207 8.80e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 2cwcA 303 8.80e+01 1vybA 238 8.83e+01 d.151.1.1 108897 1h03P 125 8.92e+01 g.18.1.1,g.18.1.1 83411,83412 1ia9A 280 8.98e+01 1ia9A d.144.1.5 62113 1b7yA 350 8.99e+01 1pysA d.104.1.1 40776