# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1y08A 323 1.86e-01 1wy6A 172 2.72e-01 1nm8A 616 5.55e-01 c.43.1.3,c.43.1.3 85872,85873 1tx2A 297 6.70e-01 c.1.21.1 107420 1to6A 371 7.02e-01 c.141.1.1 107170 1a12A 413 1.02e+00 1a12A b.69.5.1 27663 1u8vA 490 1.25e+00 1qopA 268 1.58e+00 2tysA c.1.2.4 28570 1ad1A 266 2.09e+00 1aj2 c.1.21.1 29668 1sjdA 368 2.11e+00 c.1.11.2,d.54.1.1 105632,105633 2fjbA 643 2.57e+00 1jnrA 643 2.71e+00 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1p5dX 463 3.97e+00 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1t3tA 1303 4.03e+00 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1eyeA 280 4.42e+00 1aj2 c.1.21.1 29672 1wqaA 455 4.66e+00 1w98B 283 4.84e+00 1p0hA 318 5.54e+00 d.108.1.1 93866 1mgtA 174 5.58e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1xl7A 612 5.68e+00 1x8gA 227 5.68e+00 1n57A 291 5.85e+00 c.23.16.2 85328 1t1uA 639 6.62e+00 1b43A 340 6.74e+00 1a76 a.60.7.1,c.120.1.2 18092,33362 1oi2A 366 7.00e+00 c.119.1.2 103802 1x8hA 228 7.08e+00 1ceo 343 7.16e+00 1ceo c.1.8.3 28808 1twiA 434 8.36e+00 b.49.2.3,c.1.6.1 107399,107400 1nrwA 288 8.44e+00 c.108.1.10 86128 1paqA 189 9.31e+00 a.118.1.14 94413 1gr0A 367 9.34e+00 c.2.1.3,d.81.1.3 70379,70380 1zsyA 357 9.64e+00 2c27A 315 1.00e+01 1g60A 260 1.06e+01 c.66.1.11 70151 2etvA 346 1.18e+01 1ws0A 156 1.24e+01 1ii5A 233 1.27e+01 c.94.1.1 62412 2g8lA 299 1.46e+01 1t6eX 381 1.52e+01 b.50.1.2 106564 1pp7U 131 1.53e+01 a.4.5.44 94973 2fz4A 237 1.58e+01 1mv8A 436 1.67e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1vj7A 393 1.80e+01 a.211.1.1,d.218.1.8 100801,100802 1zuwA 272 1.87e+01 1tp9A 162 1.88e+01 1wstA 417 1.90e+01 1xeoA 168 2.00e+01 1n5nA 180 2.06e+01 d.167.1.1 85336 2fcjA 119 2.07e+01 1xi3A 215 2.10e+01 c.1.3.1 109601 1php 394 2.11e+01 16pk c.86.1.1 35452 1go3F 107 2.20e+01 a.60.8.2 65407 1kfcA 268 2.21e+01 c.1.2.4 77371 1i4jA 110 2.30e+01 d.55.1.1 76734 1vr6A 350 2.37e+01 1pa1A 310 2.54e+01 c.45.1.2 94404 1z5bA 469 2.55e+01 1mrzA 293 2.62e+01 b.43.5.1,c.26.1.3 91452,91453 1wvqA 167 2.65e+01 1bn7A 294 2.70e+01 1bn6A c.69.1.8 34677 1lzlA 323 2.84e+01 c.69.1.2 78306 1k20A 310 2.87e+01 c.107.1.1 68027 1rlr 761 2.88e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1snyA 267 2.91e+01 c.2.1.2 105833 1tqhA 247 2.93e+01 c.69.1.29 107225 1ys4A 354 2.94e+01 2f71A 298 2.96e+01 1iicA 422 2.96e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1bhdA 118 3.00e+01 1bkrA a.40.1.1 17398 2a5hA 416 3.01e+01 1wywA 230 3.02e+01 1uwzA 136 3.05e+01 c.97.1.1 108081 1su8A 636 3.08e+01 e.26.1.2 98999 1dgnA 89 3.15e+01 1dgnA a.77.1.3 18436 1j7gA 144 3.15e+01 c.110.1.1 84130 1jd0A 263 3.19e+01 2cba b.74.1.1 62888 1vjnA 220 3.21e+01 d.157.1.4 100825 1syyA 346 3.23e+01 a.25.1.2 106126 1b65A 375 3.40e+01 1b65A d.154.1.1 42020 1whi 122 3.42e+01 1whi b.39.1.1 24810 1mvcA 240 3.47e+01 a.123.1.1 79499 1mp1A 111 3.49e+01 a.188.1.1 91382 2g9zA 348 3.71e+01 1lj5A 379 3.94e+01 e.1.1.1 73928 1vbuA 328 4.02e+01 2bo4A 397 4.06e+01 1x88A 359 4.14e+01 1g8aA 227 4.23e+01 c.66.1.3 90506 1xhkA 187 4.26e+01 2bhvA 246 4.44e+01 1pvmA 184 4.62e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2cw6A 298 4.82e+01 1tuvA 114 4.91e+01 2f5xA 312 4.92e+01 1s1fA 406 5.00e+01 2cu3A 64 5.07e+01 1akz 223 5.15e+01 3eugA c.18.1.1 31007 1ew6A 137 5.23e+01 1ewaA a.1.1.2 15637 1aj2 282 5.27e+01 1aj2 c.1.21.1 29665 1i6aA 219 5.38e+01 c.94.1.1 61827 1ff9A 450 5.38e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1axn 323 5.40e+01 1avc a.65.1.1 18149 1zkiA 133 5.51e+01 1xreA 217 5.56e+01 1eca 136 5.73e+01 1flp a.1.1.2 15209 2rmcA 182 5.75e+01 2cpl b.62.1.1 27491 2b4aA 138 5.82e+01 1rvgA 305 6.09e+01 c.1.10.2 97920 1wmaA 276 6.13e+01 1xo7A 166 6.23e+01 1l5xA 280 6.31e+01 c.106.1.1 77718 1v0lA 313 6.35e+01 c.1.8.3 108207 2axwA 134 6.38e+01 1yf3A 259 6.54e+01 1j5uA 136 6.60e+01 d.208.1.1 71584 1nmeA 146 6.62e+01 c.17.1.1 85874 1jtdB 273 6.68e+01 b.69.5.2 67265 1yvrA 538 6.77e+01 1gdvA 85 6.82e+01 1ctj a.3.1.1 60458 2gn4A 344 6.84e+01 1w2iA 91 7.09e+01 d.58.10.1 109127 1n82A 331 7.11e+01 c.1.8.3 91703 2pth 193 7.20e+01 2pth c.56.3.1 33793 1ua7A 422 7.29e+01 b.71.1.1,c.1.8.1 107759,107760 1jksA 294 7.32e+01 d.144.1.7 71710 1u2zA 433 7.34e+01 c.66.1.31 107626 1uh5A 329 7.39e+01 c.2.1.2 107840 1dosA 358 7.41e+01 1dosA c.1.10.2 29175 1eokA 290 7.44e+01 1eokA c.1.8.5 28991 1s3eA 520 7.48e+01 c.3.1.2,d.16.1.5 98426,98427 1e43A 483 7.51e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1eceA 358 7.55e+01 1eceA c.1.8.3 28813 1h65A 270 7.57e+01 c.37.1.8 65640 2b6nA 278 7.57e+01 1hgxA 183 7.57e+01 1tc1A c.61.1.1 34027 1qlpA 394 7.72e+01 1ovaA e.1.1.1 42628 2fckA 181 7.74e+01 1u04A 771 7.77e+01 b.34.14.1,c.55.3.10 107539,107540 2f4nA 273 7.82e+01 1s7zA 117 7.82e+01 a.159.3.1 98715 1ktbA 405 7.95e+01 b.71.1.1,c.1.8.1 72960,72961 2cbuA 468 7.96e+01 1nwwA 149 8.01e+01 d.17.4.8 86306 1tfe 145 8.05e+01 1tfe d.43.1.1 38680 1m6dA 214 8.10e+01 d.3.1.1 84849 1tp5A 119 8.20e+01 1r7mA 235 8.21e+01 1xuqA 212 8.40e+01 1c4oA 664 8.58e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1vjkA 98 8.61e+01 d.15.3.1 108631 2fywA 267 8.64e+01 2fs2A 151 8.71e+01 1xd3A 230 8.75e+01 1jyhA 157 8.83e+01 d.60.1.3 71956 1w2lA 99 8.85e+01 1wkyA 464 8.97e+01