# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sjdA 368 2.12e-01 c.1.11.2,d.54.1.1 105632,105633 1a12A 413 4.86e-01 1a12A b.69.5.1 27663 1twiA 434 6.70e-01 b.49.2.3,c.1.6.1 107399,107400 1g26A 31 7.35e-01 1g26A g.3.16.1 44381 1i4jA 110 7.36e-01 d.55.1.1 76734 1iznB 277 8.96e-01 e.43.1.2 83848 1mugA 168 1.22e+00 1mugA c.18.1.2 31030 1s3eA 520 1.27e+00 c.3.1.2,d.16.1.5 98426,98427 1mgtA 174 1.57e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1neiA 60 1.72e+00 d.253.1.1 91843 1wyuB 474 3.53e+00 2dcnA 311 4.35e+00 1s14A 194 5.18e+00 d.122.1.2 98329 2d4rA 147 5.56e+00 1wy6A 172 5.57e+00 1s7zA 117 5.69e+00 a.159.3.1 98715 1r9kA 172 5.71e+00 a.168.1.1 104869 1nm8A 616 5.82e+00 c.43.1.3,c.43.1.3 85872,85873 1jl0A 334 5.82e+00 1jenA d.156.1.1 63155 1yn8A 59 6.50e+00 1s7iA 124 6.78e+00 d.58.4.9 105353 1flcB 175 7.18e+00 1flcB h.3.1.1 45716 1p4oA 322 7.21e+00 d.144.1.7 87775 1twuA 139 7.28e+00 d.32.1.8 107413 1wr2A 238 7.72e+00 2axwA 134 7.94e+00 2gcuA 245 7.97e+00 1sg4A 260 8.28e+00 1uayA 242 8.76e+00 c.2.1.2 88390 1w98B 283 9.48e+00 1uwkA 557 1.07e+01 e.51.1.1 108065 1rlzA 369 1.07e+01 c.31.1.1 104989 2gmyA 153 1.13e+01 1cyx 205 1.14e+01 1cyx b.6.1.2 23023 1wxrA 1048 1.18e+01 1ew6A 137 1.19e+01 1ewaA a.1.1.2 15637 1d0qA 103 1.19e+01 1d0qA g.41.3.2 45208 2au5A 139 1.21e+01 2bv2A 83 1.24e+01 1v54G 85 1.25e+01 f.23.2.1 100328 1to6A 371 1.25e+01 c.141.1.1 107170 1s68A 249 1.27e+01 d.142.2.4 98591 1fc6A 388 1.29e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 2c27A 315 1.30e+01 2cqsA 842 1.32e+01 1hgxA 183 1.33e+01 1tc1A c.61.1.1 34027 2bkyA 97 1.47e+01 1gz8A 299 1.53e+01 d.144.1.7 83405 1n8vA 112 1.56e+01 a.118.21.1 85457 1jtdB 273 1.56e+01 b.69.5.2 67265 1xd8A 289 1.60e+01 1x3mA 415 1.65e+01 1kaeA 434 1.66e+01 c.82.1.2 72247 1wwiA 148 1.69e+01 1axn 323 1.71e+01 1avc a.65.1.1 18149 1rypB 250 1.71e+01 1rypB d.153.1.4 41933 1y60A 169 1.73e+01 1lnsA 763 1.76e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1qv1A 195 1.85e+01 a.39.1.5 96347 2d81A 318 1.88e+01 1xhkA 187 1.95e+01 1r9cA 139 2.05e+01 d.32.1.2 97255 1y43A 39 2.12e+01 1k24A 253 2.18e+01 f.4.4.2 72002 1hdhA 536 2.19e+01 c.76.1.2 65805 1wvqA 167 2.19e+01 2c2nA 339 2.23e+01 1p0hA 318 2.24e+01 d.108.1.1 93866 1rwrA 301 2.28e+01 b.80.1.11 97990 1yhvA 297 2.29e+01 1xnkA 196 2.39e+01 1xqoA 256 2.39e+01 2cu6A 103 2.58e+01 2abqA 306 2.61e+01 1g8pA 350 2.63e+01 1g8pA c.37.1.20 60376 2bhvA 246 2.67e+01 1nkiA 135 2.68e+01 d.32.1.2 91941 1tn3 137 2.76e+01 1htn d.169.1.1 42423 2fymA 431 2.83e+01 1pmnA 364 2.83e+01 d.144.1.7 94907 2ghjA 118 2.90e+01 1zvnA 99 2.97e+01 1qhtA 775 3.09e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1zc6A 305 3.12e+01 1womA 271 3.13e+01 2f4nA 273 3.24e+01 1sgoA 139 3.29e+01 d.82.3.1 98857 1yeyA 444 3.39e+01 2azpA 318 3.42e+01 1vkcA 158 3.43e+01 1rypJ 204 3.45e+01 d.153.1.4 41878 1cpcA 162 3.50e+01 1cpcA a.1.1.3 15643 1dgnA 89 3.55e+01 1dgnA a.77.1.3 18436 1guqA 348 3.61e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 2bkkA 264 3.65e+01 1zmmA 33 3.70e+01 1h8dL 29 3.73e+01 b.47.1.2 60737 1vlaA 150 3.76e+01 d.227.1.2 108735 2au3A 407 3.83e+01 1edqA 540 3.88e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1o12A 376 3.89e+01 b.92.1.5,c.1.9.10 80758,80759 1paqA 189 3.89e+01 a.118.1.14 94413 1u2eA 289 4.06e+01 1zpsA 138 4.51e+01 1g8aA 227 4.60e+01 c.66.1.3 90506 7fd1A 106 4.63e+01 1a6l d.58.1.2 38953 1ykdA 398 4.74e+01 2c8mA 262 4.78e+01 1jljA 189 4.87e+01 c.57.1.1 63169 1q15A 503 4.87e+01 c.26.2.1,d.153.1.1 95538,95539 1xmxA 385 4.99e+01 1nmeA 146 5.03e+01 c.17.1.1 85874 1brwA 433 5.04e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1bco 327 5.14e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1c7qA 445 5.15e+01 2pgi c.80.1.2 35307 1iicA 422 5.16e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1kte 105 5.20e+01 1kte c.47.1.1 32771 1winA 143 5.21e+01 1zkiA 133 5.21e+01 1ihgA 370 5.26e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1wv8A 73 5.30e+01 1hxiA 121 5.39e+01 1hxiA a.118.8.1 61366 1k1vA 41 5.49e+01 a.37.1.1 71999 1u8vA 490 5.51e+01 2cwcA 303 5.62e+01 1e43A 483 6.05e+01 1bli b.71.1.1,c.1.8.1 59217,59218 1xxaA 78 6.05e+01 1xxaA d.74.2.1 39700 1t4aA 84 6.07e+01 d.284.1.1 106404 1s12A 94 6.09e+01 1xpjA 126 6.09e+01 1rgyA 360 6.17e+01 e.3.1.1 97456 1kicA 339 6.18e+01 c.70.1.1 72510 1ewnA 219 6.19e+01 1bnkA b.46.1.2 25762 1gzsB 165 6.20e+01 a.168.1.1 76425 1tkkA 366 6.25e+01 c.1.11.2,d.54.1.1 107089,107090 1vkwA 218 6.28e+01 d.90.1.2 108695 1p2xA 159 6.32e+01 a.40.1.1 104062 1lehA 364 6.35e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1vkdA 338 6.38e+01 b.67.2.4 108644 1v58A 241 6.62e+01 c.47.1.9,d.17.3.1 108371,108372 1pp7U 131 6.76e+01 a.4.5.44 94973 1hyhA 309 6.83e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1vhxA 150 6.87e+01 c.55.3.8 100712 1uhkA 191 6.88e+01 1h6kZ 98 6.92e+01 d.58.7.1 60686 2bcqA 335 6.99e+01 1qi9A 556 7.10e+01 1qhbA a.111.1.2 19053 1dpjA 329 7.28e+01 1smrA b.50.1.2 26828 1ryp1 222 7.50e+01 1ryp1 1jetA 517 7.52e+01 1jevA c.94.1.1 35718 1s1fA 406 7.62e+01 1pgl2 370 7.77e+01 2cvjA 180 7.86e+01 1mlwA 301 7.95e+01 d.178.1.1 79289 1t61C 227 8.03e+01 d.169.1.6,d.169.1.6 106533,106534 1xbbA 291 8.08e+01 1bh0 29 8.10e+01 j.6.1.1 46102 1r0mA 375 8.14e+01 c.1.11.2,d.54.1.1 104747,104748 2a5lA 200 8.32e+01 2ch7A 309 8.40e+01 1l6pA 125 8.44e+01 b.1.17.1 73626 1wlyA 333 8.60e+01 2bdwA 362 8.69e+01 1wqwA 235 8.83e+01 2c2aA 258 8.93e+01 1yfnA 118 8.96e+01