# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlzA 369 8.58e-02 c.31.1.1 104989 1i4jA 110 1.36e-01 d.55.1.1 76734 1twiA 434 1.96e-01 b.49.2.3,c.1.6.1 107399,107400 1sjdA 368 2.23e-01 c.1.11.2,d.54.1.1 105632,105633 1a12A 413 6.06e-01 1a12A b.69.5.1 27663 1g26A 31 7.91e-01 1g26A g.3.16.1 44381 1ew6A 137 1.01e+00 1ewaA a.1.1.2 15637 1p4oA 322 1.07e+00 d.144.1.7 87775 2bkyA 97 1.68e+00 1s14A 194 2.09e+00 d.122.1.2 98329 1x3mA 415 2.16e+00 1s5dA 240 2.32e+00 d.166.1.1 98541 1r9kA 172 2.33e+00 a.168.1.1 104869 1lnsA 763 2.48e+00 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1xqoA 256 2.77e+00 1gz8A 299 2.93e+00 d.144.1.7 83405 2dcnA 311 3.02e+00 1uayA 242 3.40e+00 c.2.1.2 88390 1wxrA 1048 3.40e+00 1mugA 168 3.52e+00 1mugA c.18.1.2 31030 1pmnA 364 3.92e+00 d.144.1.7 94907 1c7qA 445 4.21e+00 2pgi c.80.1.2 35307 1n8vA 112 4.41e+00 a.118.21.1 85457 1neiA 60 4.44e+00 d.253.1.1 91843 2cqsA 842 4.56e+00 1wwiA 148 5.01e+00 1s7iA 124 5.04e+00 d.58.4.9 105353 1y60A 169 6.03e+00 2au5A 139 6.05e+00 1ykdA 398 6.67e+00 2bdwA 362 6.71e+00 1jtdB 273 7.36e+00 b.69.5.2 67265 1rwzA 245 7.39e+00 d.131.1.2,d.131.1.2 98005,98006 1guqA 348 7.40e+00 1guqA d.13.1.2,d.13.1.2 37522,37523 1v54G 85 7.52e+00 f.23.2.1 100328 2gmyA 153 7.57e+00 1hgxA 183 7.58e+00 1tc1A c.61.1.1 34027 1yn8A 59 7.89e+00 1y43A 39 8.25e+00 1sazA 381 8.28e+00 2al6A 375 8.55e+00 1mgtA 174 8.58e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1tn3 137 8.83e+00 1htn d.169.1.1 42423 1edqA 540 9.85e+00 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1id0A 152 1.01e+01 d.122.1.3 66111 1kaeA 434 1.03e+01 c.82.1.2 72247 1vhxA 150 1.04e+01 c.55.3.8 100712 1wdvA 152 1.14e+01 1wzlA 585 1.16e+01 1gzsB 165 1.18e+01 a.168.1.1 76425 1wyuB 474 1.20e+01 1uwkA 557 1.20e+01 e.51.1.1 108065 1jetA 517 1.22e+01 1jevA c.94.1.1 35718 1xjdA 345 1.25e+01 1v9nA 360 1.25e+01 1rwrA 301 1.38e+01 b.80.1.11 97990 2bv2A 83 1.39e+01 1s3eA 520 1.40e+01 c.3.1.2,d.16.1.5 98426,98427 1augA 215 1.44e+01 1a2zA c.56.4.1 33798 1axn 323 1.50e+01 1avc a.65.1.1 18149 1nm8A 616 1.52e+01 c.43.1.3,c.43.1.3 85872,85873 1zkiA 133 1.54e+01 1yhvA 297 1.54e+01 1xxaA 78 1.54e+01 1xxaA d.74.2.1 39700 1to6A 371 1.57e+01 c.141.1.1 107170 1chkA 238 1.58e+01 1chkA d.2.1.7 36999 1vkcA 158 1.59e+01 2fn0A 437 1.59e+01 1fc6A 388 1.63e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1hxiA 121 1.64e+01 1hxiA a.118.8.1 61366 1d0qA 103 1.76e+01 1d0qA g.41.3.2 45208 1csn 298 1.78e+01 1csn d.144.1.7 41664 2axwA 134 1.82e+01 1o12A 376 1.94e+01 b.92.1.5,c.1.9.10 80758,80759 2bhvA 246 2.02e+01 1twuA 139 2.04e+01 d.32.1.8 107413 1wr2A 238 2.04e+01 1wdpA 495 2.05e+01 1t46A 313 2.06e+01 d.144.1.7 106397 2gcuA 245 2.10e+01 2f57A 317 2.17e+01 1pvgA 418 2.18e+01 d.14.1.3,d.122.1.2 95161,95162 2azpA 318 2.21e+01 1yw5A 177 2.23e+01 2fdbM 164 2.23e+01 1k7hA 476 2.24e+01 c.76.1.1 72101 1k24A 253 2.24e+01 f.4.4.2 72002 2aa4A 289 2.35e+01 2d4rA 147 2.38e+01 1cyx 205 2.41e+01 1cyx b.6.1.2 23023 2bkyX 89 2.46e+01 1xm9A 457 2.52e+01 1vquA 374 2.59e+01 1k1vA 41 2.60e+01 a.37.1.1 71999 1bco 327 2.65e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1h6kZ 98 2.76e+01 d.58.7.1 60686 1i2tA 61 2.78e+01 1i2tA a.144.1.1 61582 1womA 271 2.79e+01 1wmwA 330 2.79e+01 1ihgA 370 2.83e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1udh 244 2.86e+01 3eugA c.18.1.1 31015 1rypB 250 2.87e+01 1rypB d.153.1.4 41933 1to2I 64 2.94e+01 1zmmA 33 2.96e+01 2a5lA 200 2.97e+01 1u59A 287 3.00e+01 d.144.1.7 107681 1qntA 176 3.02e+01 1sfe a.4.2.1,c.55.7.1 16074,33749 1xhkA 187 3.02e+01 1w66A 232 3.06e+01 1vq3A 94 3.06e+01 1p2xA 159 3.17e+01 a.40.1.1 104062 1zedA 484 3.17e+01 1t61A 229 3.18e+01 d.169.1.6,d.169.1.6 106529,106530 2c30A 321 3.24e+01 1vlaA 150 3.25e+01 d.227.1.2 108735 2c27A 315 3.28e+01 1yeyA 444 3.30e+01 1qr0A 228 3.36e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1y08A 323 3.46e+01 1zk7A 467 3.51e+01 1xbbA 291 3.52e+01 1qlmA 316 3.56e+01 1qlmA d.147.1.1 41765 1sg4A 260 3.58e+01 1ryp1 222 3.58e+01 1ryp1 1fehA 574 3.59e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1wy6A 172 3.63e+01 1sxvA 172 3.64e+01 1va4A 279 3.65e+01 c.69.1.12 108458 1zvnA 99 3.67e+01 1akz 223 3.90e+01 3eugA c.18.1.1 31007 2b1xA 470 3.91e+01 1amf 233 3.96e+01 1wod c.94.1.1 35833 1jljA 189 3.99e+01 c.57.1.1 63169 1zavA 180 4.01e+01 1h8dL 29 4.08e+01 b.47.1.2 60737 1xpjA 126 4.09e+01 1v9fA 325 4.10e+01 d.265.1.3 108448 2ghjA 118 4.12e+01 2amxA 376 4.14e+01 1s7zA 117 4.14e+01 a.159.3.1 98715 1ok7A 366 4.18e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1uv0A 149 4.29e+01 d.169.1.1 100028 1m6yA 301 4.30e+01 a.60.13.1,c.66.1.23 78716,78717 1vzoA 355 4.35e+01 d.144.1.7 108971 1u9lA 70 4.38e+01 a.60.4.2 107751 2au3A 407 4.44e+01 1eceA 358 4.47e+01 1eceA c.1.8.3 28813 1knyA 253 4.50e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 4eugA 229 4.52e+01 3eugA c.18.1.1 31019 1eexB 224 4.54e+01 1dioB c.51.3.1 33213 1xmxA 385 4.55e+01 1utyA 187 4.58e+01 b.147.1.1 108036 1eh8A 207 4.59e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 2c2nA 339 4.65e+01 1h9oA 112 4.65e+01 1qadA d.93.1.1 60837 1qv1A 195 4.67e+01 a.39.1.5 96347 1wvqA 167 4.67e+01 1ew4A 106 4.69e+01 1ew4A d.82.2.1 40023 1v9tA 166 4.73e+01 b.62.1.1 108451 1t4aA 84 4.79e+01 d.284.1.1 106404 1r0mA 375 4.88e+01 c.1.11.2,d.54.1.1 104747,104748 2fymA 431 4.96e+01 1vj1A 363 4.97e+01 b.35.1.2,c.2.1.1 100794,100795 1egpA 45 5.04e+01 1egpA d.40.1.1 38561 2c1iA 431 5.05e+01 1khqA 212 5.08e+01 d.3.1.1 90964 1q8dA 108 5.08e+01 a.228.1.1 104554 1el6A 219 5.14e+01 1el6B d.182.1.1 42606 2cioA 212 5.21e+01 1u2eA 289 5.33e+01 1vajA 214 5.41e+01 2cwcA 303 5.42e+01 1pp7U 131 5.44e+01 a.4.5.44 94973 1r9cA 139 5.44e+01 d.32.1.2 97255 1yliA 153 5.45e+01 1ehiA 377 5.46e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1oapA 109 5.56e+01 d.79.7.1 92706 1v7rA 186 5.58e+01 c.51.4.1 100482 1j0hA 588 5.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1mtyD 512 5.76e+01 1mhyD a.25.1.2 16742 2c2aA 258 5.78e+01 1cnzA 363 5.78e+01 1cnzA c.77.1.1 35061 1exbA 332 5.81e+01 1qrqA c.1.7.1 28666 1vf8A 377 5.88e+01 1hm6A 346 5.88e+01 1avc a.65.1.1 18147 1pb6A 212 5.96e+01 a.4.1.9,a.121.1.1 88017,88018 1z2lA 423 6.01e+01 7taa 478 6.02e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1s68A 249 6.04e+01 d.142.2.4 98591 1pgl2 370 6.08e+01 1sgoA 139 6.10e+01 d.82.3.1 98857 1wwkA 307 6.11e+01 1kte 105 6.18e+01 1kte c.47.1.1 32771 1pmmA 466 6.29e+01 c.67.1.6 94901 1tkkA 366 6.31e+01 c.1.11.2,d.54.1.1 107089,107090 1mv8A 436 6.35e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1x65A 89 6.35e+01 1xuqA 212 6.36e+01 1qhfA 240 6.36e+01 1qhfA c.60.1.1 33960 1xfsA 178 6.37e+01 d.129.3.5 109589 1ysrA 150 6.37e+01 1zetA 388 6.41e+01 2f4nA 273 6.42e+01 1xd3A 230 6.50e+01 1rypJ 204 6.51e+01 d.153.1.4 41878 1wg8A 285 6.53e+01 1hyeA 313 6.55e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1q1oA 98 6.66e+01 d.15.2.2 95596 1ve2A 235 6.74e+01 1sjwA 144 6.74e+01 d.17.4.9 98899 1winA 143 6.79e+01 1of5A 221 6.85e+01 d.17.4.2 86933 1qhtA 775 6.97e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1qi9A 556 7.08e+01 1qhbA a.111.1.2 19053 2c8mA 262 7.08e+01 1e1hA 287 7.16e+01 d.92.1.7 83167 2bhoA 130 7.19e+01 1zsxA 347 7.20e+01 1xreA 217 7.23e+01 1l6pA 125 7.23e+01 b.1.17.1 73626 1sdjA 310 7.24e+01 d.21.1.2,d.21.1.2 98807,98808 1z96A 40 7.27e+01 1ni4A 365 7.31e+01 c.36.1.11 85728 1ix9A 205 7.33e+01 a.2.11.1,d.44.1.1 76899,76900 1y8qB 640 7.35e+01 2fpqA 444 7.35e+01 1t61C 227 7.36e+01 d.169.1.6,d.169.1.6 106533,106534 2feaA 236 7.36e+01 1r0pA 312 7.37e+01 d.144.1.7 96734 1tt7A 330 7.40e+01 1k7kA 221 7.44e+01 c.51.4.1 72104 1suuA 312 7.46e+01 b.68.10.1 99006 1cqtI 44 7.55e+01 1b0nA 111 7.57e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1t6eX 381 7.64e+01 b.50.1.2 106564 2pth 193 7.68e+01 2pth c.56.3.1 33793 1pfvA 551 7.72e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1xdnA 277 7.82e+01 1pdo 135 7.84e+01 1pdo c.54.1.1 33376 1vflA 356 7.89e+01 1iicA 422 7.91e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1l9kA 305 7.94e+01 c.66.1.25 84569 2arzA 247 8.09e+01 1yqtA 538 8.12e+01 1jl0A 334 8.20e+01 1jenA d.156.1.1 63155 1q15A 503 8.25e+01 c.26.2.1,d.153.1.1 95538,95539 1qpcA 279 8.49e+01 1fgkA d.144.1.7 41685 1g6uA 48 8.57e+01 1g6uA k.9.1.1 46425 1iuqA 367 8.60e+01 c.112.1.1 90703 2cvjA 180 8.61e+01 2fdoA 94 8.65e+01 1gbs 185 8.72e+01 153l d.2.1.5 36986 1sx5A 244 8.76e+01 c.52.1.2 99023 1iioA 84 8.81e+01 a.39.4.1 66150 1nu0A 138 8.82e+01 c.55.3.8 92165 1dljA 402 8.83e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1aj2 282 8.83e+01 1aj2 c.1.21.1 29665 2booA 247 8.84e+01 1vl4A 447 8.93e+01 d.283.1.1 108718 1vzmA 45 8.99e+01