# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fjbA 643 3.35e-01 1jnrA 643 3.55e-01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1u8vA 490 5.13e-01 1sjdA 368 2.33e+00 c.1.11.2,d.54.1.1 105632,105633 1s1fA 406 2.74e+00 1b43A 340 2.94e+00 1a76 a.60.7.1,c.120.1.2 18092,33362 1a12A 413 3.31e+00 1a12A b.69.5.1 27663 1nm8A 616 3.46e+00 c.43.1.3,c.43.1.3 85872,85873 1ys4A 354 3.78e+00 1ru3A 732 4.92e+00 e.26.1.3 97835 1y08A 323 5.01e+00 1x8hA 228 5.35e+00 1a76 326 5.71e+00 1a76 a.60.7.1,c.120.1.2 18091,33361 1akz 223 5.76e+00 3eugA c.18.1.1 31007 1x8gA 227 6.10e+00 1rlr 761 7.52e+00 1rlr a.98.1.1,c.7.1.2 18753,30679 1xl7A 612 7.73e+00 2etvA 346 8.15e+00 1w98B 283 8.50e+00 1vkwA 218 9.34e+00 d.90.1.2 108695 1gr0A 367 9.56e+00 c.2.1.3,d.81.1.3 70379,70380 1wy6A 172 9.86e+00 1ad1A 266 1.10e+01 1aj2 c.1.21.1 29668 1hrkA 359 1.11e+01 1hrkA c.92.1.1 61228 1oi2A 366 1.13e+01 c.119.1.2 103802 1tx2A 297 1.14e+01 c.1.21.1 107420 2booA 247 1.16e+01 1pa1A 310 1.25e+01 c.45.1.2 94404 2b4vA 468 1.43e+01 2f71A 298 1.51e+01 1g9gA 629 1.53e+01 a.102.1.2 83279 1to6A 371 1.60e+01 c.141.1.1 107170 1uayA 242 1.63e+01 c.2.1.2 88390 1mgtA 174 1.67e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1g60A 260 1.81e+01 c.66.1.11 70151 1cl8A 276 1.89e+01 1ckqA c.52.1.1 33230 1t1uA 639 1.96e+01 2bo4A 397 2.08e+01 1wstA 417 2.29e+01 1gwuA 309 2.33e+01 a.93.1.1 83351 1sbp 310 2.35e+01 1sbp c.94.1.1 35760 1vlbA 907 2.41e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1h5qA 265 2.43e+01 1cydA c.2.1.2 60643 1zuwA 272 2.44e+01 1bn7A 294 2.51e+01 1bn6A c.69.1.8 34677 1vbuA 328 2.53e+01 1sk4A 163 2.55e+01 d.118.1.1 105664 2akaB 299 2.63e+01 1yzyA 413 2.64e+01 1t5oA 351 2.68e+01 c.124.1.5 106459 1e3dA 266 2.73e+01 2frvA e.19.1.1 59188 1kfcA 268 2.74e+01 c.1.2.4 77371 1xi3A 215 2.75e+01 c.1.3.1 109601 1wmaA 276 3.04e+01 1t3tA 1303 3.08e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1lzlA 323 3.08e+01 c.69.1.2 78306 1vggA 161 3.11e+01 1xhkA 187 3.28e+01 1xqoA 256 3.28e+01 1ua7A 422 3.30e+01 b.71.1.1,c.1.8.1 107759,107760 1vj7A 393 3.31e+01 a.211.1.1,d.218.1.8 100801,100802 2cw6A 298 3.34e+01 1mvcA 240 3.35e+01 a.123.1.1 79499 1h65A 270 3.57e+01 c.37.1.8 65640 1xyzA 347 3.59e+01 1taxA c.1.8.3 28804 1hxhA 253 3.79e+01 c.2.1.2 76725 1te5A 257 3.81e+01 d.153.1.1 106795 1k20A 310 3.86e+01 c.107.1.1 68027 1ii5A 233 3.93e+01 c.94.1.1 62412 1lj5A 379 4.03e+01 e.1.1.1 73928 1zsyA 357 4.12e+01 1brwA 433 4.22e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1oaoC 729 4.25e+01 e.26.1.3 86746 3tmkA 216 4.29e+01 3tmkA c.37.1.1 31920 2apjA 260 4.29e+01 1hdcA 253 4.66e+01 1e6wA c.2.1.2 29862 1qopA 268 4.67e+01 2tysA c.1.2.4 28570 1xg5A 279 4.69e+01 1yw3A 208 4.70e+01 2fuvA 549 4.76e+01 1kngA 156 4.77e+01 c.47.1.10 72777 1qlpA 394 4.78e+01 1ovaA e.1.1.1 42628 1a8q 274 4.79e+01 1brt c.69.1.12 34702 1r2rA 248 4.81e+01 c.1.1.1 96875 1uh5A 329 4.92e+01 c.2.1.2 107840 1gdvA 85 4.97e+01 1ctj a.3.1.1 60458 1g7sA 594 5.06e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1twiA 434 5.13e+01 b.49.2.3,c.1.6.1 107399,107400 2f4nA 273 5.14e+01 1x88A 359 5.14e+01 1k92A 455 5.16e+01 c.26.2.1,d.210.1.1 68325,68326 1geeA 261 5.16e+01 c.2.1.2 90509 1e6wA 260 5.23e+01 1e6wA c.2.1.2 59326 1n8kA 374 5.28e+01 b.35.1.2,c.2.1.1 80298,80299 1mp1A 111 5.32e+01 a.188.1.1 91382 1uedA 406 5.36e+01 a.104.1.1 99256 2b1xA 470 5.57e+01 1x6vA 630 5.62e+01 1pa2A 306 5.63e+01 1bgp a.93.1.1 18693 1v10A 521 5.70e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1kb9A 431 5.87e+01 d.185.1.1,d.185.1.1 77311,77312 1ve3A 227 5.92e+01 2bogX 286 5.95e+01 1rwrA 301 5.95e+01 b.80.1.11 97990 1odfA 290 6.11e+01 c.37.1.6 92782 1nrwA 288 6.18e+01 c.108.1.10 86128 1wpnA 188 6.18e+01 1eyeA 280 6.21e+01 1aj2 c.1.21.1 29672 1aj2 282 6.24e+01 1aj2 c.1.21.1 29665 1o5xA 248 6.24e+01 c.1.1.1 92528 1d2mA 665 6.42e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1mdl 359 6.46e+01 2mnr c.1.11.2,d.54.1.1 29247,38891 2gwgA 350 6.47e+01 1gegA 256 6.58e+01 1ybvA c.2.1.2 29888 1rxwA 336 6.60e+01 a.60.7.1,c.120.1.2 98059,98060 1jl0A 334 6.61e+01 1jenA d.156.1.1 63155 1wvqA 167 6.72e+01 1r7mA 235 6.73e+01 1vr6A 350 6.93e+01 1bhdA 118 7.08e+01 1bkrA a.40.1.1 17398 2cwcA 303 7.08e+01 1v0lA 313 7.17e+01 c.1.8.3 108207 1zl0A 311 7.25e+01 2cwlA 302 7.28e+01 1iuqA 367 7.35e+01 c.112.1.1 90703 1lehA 364 7.37e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1yyaA 250 7.44e+01 2a5hA 416 7.46e+01 1w32A 348 7.51e+01 1gq6A 313 7.58e+01 c.42.1.1 70341 1yvrA 538 7.62e+01 2g8lA 299 7.66e+01 1su8A 636 7.67e+01 e.26.1.2 98999 1kv5A 250 7.77e+01 c.1.1.1 73052 1rh9A 373 7.82e+01 2trxA 108 7.89e+01 1thx c.47.1.1 32719 1szoA 257 7.99e+01 c.14.1.3 106164 1ht6A 405 8.07e+01 b.71.1.1,c.1.8.1 83629,83630 1cs0A 1073 8.55e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1dosA 358 8.60e+01 1dosA c.1.10.2 29175 1wzoA 246 8.63e+01 1q3iA 214 8.69e+01 d.220.1.1 104524 1n57A 291 8.69e+01 c.23.16.2 85328 1wxrA 1048 8.71e+01 1xi1A 575 8.94e+01 1mv8A 436 8.97e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130