(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0321 
                                  10                   20        30    
                                  |                    |         |    
   1 ...M...W.....E...I...YDA...MIN...G...IP..EDFL...VDELVCGTTHSVI.RSG
   2 ...M...W.....E...I...YDA...MIN...G...IP..EDFL...VDELVCGTTHSVV.RSG
   3 ...M...W.....E...I...YDA...MIN...G...IP..EDFL...VDELVCGTTHSVI.RSG
   4 ...M...W.....S...I...YND...LID...S...IP..EDLT...VLDCMLGLHWTLI.KSE
   5 tg.I...LpslvnS...L...KND...LGP...A...L-..KDIE...VKDVRIGLAYTGVmISE
   6 i..I...Hpk...E...I...YDL...LLE...Y...GN..TTTP...IKKILIGLTWTLC.ETE
   7 ...MvnpW.....E...L...YDQ...LLE...QarlAA..GEAL...VAEVIMGPVWTVV.RTD
   8 ...M...W.....E...V...YDE...LIA...A...VP..PDLE...VEDCIVGLNWILV.RSR
   9 lwrW...Wgpe..R...L...YAD...LAN...G...V-..EDAP...VKRVVVGLNWTMV.ETE
  10 ...-...M.....K...L...IEK...LIS...I...TP..EK-K...VRELVIGLGWTVV.LSK
  11 ...Ms..T.....H...I...IEE...LLS...N...LPk.KDVT...VRSVMVGVHWTAV.CSS
  12 lwrW...Wgpg..R...L...YAD...LAN...G...V-..EDCA...VKRVVVGLNWTMV.ETA
  13 lwqW...Wgpe..Q...L...YRD...LAL...G...VA..DD-E...VRQIACGQRWIMV.EGP
  14 lwqW...Wgpe..Q...L...YRD...LAL...G...VA..DD-E...VRQIACGQRWIMV.EGP
  15 pvlV...T.....A...L...KKD...LGP...A...L-..EEIE...VKDVRIGLAYTGVlLSE
  16 rgkT...V.....K...I...LDD...LIG...S...LT..GDAP...AREVRVGRFWTAV.WSR
  17 tg.I...LpalvsA...L...KND...LGP...A...L-..EEIE...VKDVRIGLAYTGVlISE
  18 ...-...M.....S...L...IEA...IIA...S...LS..GDEV...VKEVRIGPFWTGV.WSR
  19 ltiQ...R.....N...L...VDV...LAS...Q...AA..-DSI...VSEIRIGLGYTAV.ALE
  20 ...-...L.....H...I...QNK...LMQtllG...KA..ETLK...IEEVRIGVGYSAV.KLD
  21 liiQ...K.....N...L...IDC...LEP...Q...CA..G-FC...IADVRMGLGYTAV.LLD
  22 ...MtnpC.....E...I...YDL...LQD...Y...AG..APVP...VGTVVIGLVWTLC.EAD
  23 rfpM...M.....E...LdekIYR...FFE...N...RG..RDVT...VEYLNLGLGYTAVtTSD
  24 arlM...N.....G...L...YDW...LLEhaaG...VT..RDDP...VERVCLGLSWTLA.EVG
  25 ...M...-.....-...I...LDD...ILD...E...IEnmPEIR...VRDVAIGRSWTAV.WSS
  26 g..M...Lls...R...I...KKK...AME...-...LA..EDLK...LVDFSFGLPYTWV.LVE
  27 ...M...Lls...E...I...KKK...ALN...-...LA..NGLE...LLDFGFALPYTWV.LIE
  28 ...M...SfmiieE...I...KERalnLLS...E...KE..EDFK...VIDFSFALPYSYV.LIE
  29 ...L...N.....EaenI...LRD...YYG...G...AI..ESLF...IERLVVGVFFTGV.KLS
  30 ...-...-.....-...-...---...---...-...--..----...IACLCVGLSYTAV.ITD
  31 ...-...M.....T...L...LER...LYE...A...AA..PRLCgkrVQDVRIGSHLVGV.LLD
  32 retI...H.....S...I...RNI...LGD...S...L-..DDLT...VERVVIGVFYTGV.KLS


                     40                              50          60    
                     |                               |           |    
   1 .N..G...V.GLG...PN.....R.....P...FE.....TRMP....MLTQN.L.LGLPLRVAA
   2 .N..G...V.GLG...PN.....R.....P...FE.....TRMP....MLTQN.L.LGLPLRVAA
   3 .N..G...V.GLG...PN.....R.....P...FE.....TRMP....MLTQN.L.LGLPLRVAA
   4 .S..G...T.GAA...MT.....V.....N...GG.....QQNS....GEYKE.L.ISMPLKELA
   5 .N..Y...G.GVA...CT.....P.....L...YEfsg..CPTL....GFAGS.L.KGKTADKVL
   6 .-..G...I.GLC...MS.....P.....G...TT.....TRTL....PWSGT.L.VNKPAKELA
   7 .D..Gg..M.GLA...MS.....P.....A...TA.....TRTL....PWSGT.L.RGRPIVELI
   8 .-..A...T.GLV...MT.....P.....L...EG.....HPRI....KLAGE.I.KGMPVRDLA
   9 .T..G...L.GLA...QT.....P.....E...RGtpg..CNAA....PDAGR.R.SEAGLKALA
  10 .-..Y...A.GMA...MT.....Y.....K...SN.....EE-P....RNIES.L.HEIDTRKLA
  11 .H..-...C.GLA...TTfapdkP.....H...DH.....TTHV....RNVGT.L.HQKSAQELA
  12 .T..G...V.GLA...QT.....P.....E...RGtpg..CNAA....PDAGR.R.GQAGLKALA
  13 .H..G...A.GLA...YL.....P.....R...HP.....RALQ....PRLAS.L.GKQSLRQLA
  14 .H..G...A.GLA...YL.....P.....R...HP.....RALQ....PRLAS.L.GKQSLRQLA
  15 .N..Y...G.GVA...CT.....P.....L...YEfsg..CPAL....GFAGF.L.KGNSADKVL
  16 .H..-...C.GLA...ST.....TgpgehK...HG.....ARFV....EHAGS.L.AGRSALELV
  17 .N..Y...G.GVA...CT.....P.....L...YEfsc..CPAL....GFTET.L.KGKTADKVL
  18 .-..Y...C.GLAsttFT.....H.....E...HE.....NRFPv...GEAGF.L.TGKSARELC
  19 .S..Gh..A.GVA...WT.....P.....KsdsHS.....CTHL....SGAGS.L.AGRPASVLL
  20 .N..Gh..A.GLA...WT.....P.....PnrgGG.....CTHL....HAAGT.L.GGKPATELL
  21 .S..Gn..A.GVA...WT.....P.....A...SNapc..CTHF....SAAGT.L.IGRPAVEIL
  22 .-..A...V.GLS...MS.....P.....G...VQ.....TRTL....PWAGT.L.RGKTLSELV
  23 .G..G...I.GIA...YT.....Cfga..K...ES.....CSFM....NSYYD.F.EGRPAVELL
  24 .D..S...L.GFA...FG.....P.....R...QV.....PRTL....SWAGT.L.AGQGAERLY
  25 .S..-...C.GIA...SN.....N.....G...FI.....RDF-....----E.I.PEM-THELL
  26 .GieGra.L.GVA...MT.....L.....P...EE.....--VQ....RYTNS.I.EEPSLLEFI
  27 .GpeGks.L.GVA...MT.....L.....P...EE.....--VQ....RYTNS.I.SEPSIEAFI
  28 sN..GkkaL.GVA...MT.....L.....L...EE.....YRGH....GNRKD.LnINKNLEEFI
  29 .N..G...CgGVA...YT.....P.....P...ETirnasRRIL....RGSPSaI.RGKSADVVI
  30 .D..Gg..M.GIA...YT.....Y.....A...EDthc..CRMN....RNYRD.Y.EGERAIELL
  31 .S..Ge..F.GAA...YA.....L.....P...GE.....RQTPepvfPDPAR.Y.VGMPAVELA
  32 .N..Gq..G.GLC...FT.....Pi10ccP...SS.....ARAM....PASGE.L.RGRKATAFL


           70         80                            90                 
           |          |                             |                 
   1 GCV.KSWNY.VEASIGLAAINAY.....Y.....NN.....P.....Q....VA..RE.....HG
   2 GCV.KSWNY.VEASIGLAAINAY.....Y.....NN.....P.....Q....VA..RE.....HG
   3 GCV.KSWNY.VEASIGLAAINAY.....Y.....NN.....P.....Q....VA..RE.....HG
   4 KAV.KSWTM.LEASMGLAAINSA.....L.....NT.....Pk....Q....VS..AL.....TG
   5 ELA.LSKNP.LEASVGVATANAL.....S.....HMlrdikP.....E....NF..PA.....SN
   6 SWL.RSWNS.FEATVGMATINAE.....I.....NR.....R.....S....AV..RK.....EK
   7 EWV.KSWNF.HEAAVGMAALNAA.....L.....GI.....Pm....D....WA..RE.....A-
   8 EYI.KSWNN.FEAALGLAAINSV.....L.....NT.....Pe....Q....VE..SL.....CG
   9 GLV.HSTNA.FDQALGMAACNAH.....Y.....NR.....F.....D....LD..LP.....DG
  10 ELL.KSWNF.LEASIGLAAINST.....I.....PP.....Pksy..K....VA..NA.....LD
  11 QYA.LSENT.IEAGIGIAAINSLme...Y.....NE.....N.....D....AVemNA.....SE
  12 GLV.HSANA.FDQALGMAACNAH.....Y.....NR.....Y.....D....LE..LP.....GG
  13 ALA.MSWDP.LETALGIAAINAH.....Y.....NR.....Y.....D....LA..AA.....AG
  14 ALA.MSWDP.LETALGIAAINAH.....Y.....NR.....Y.....D....LA..AA.....AG
  15 EFA.LSKNP.FEAAVGVATANAL.....S.....HMl....H.....D....LE..PKkfpvsKT
  16 SLA.HSNSS.LEAGIGMAAINSM.....L.....EV.....D.....EgrcvER..NA.....GD
  17 ELA.LSEKP.LEAAVGIATANALsh6rdL.....EP.....E.....H....FQ..RS.....YS
  18 RYA.TSTSL.LEASIGLAAINSL.....L.....EV.....Dmeqc.Q....DI..NA.....GE
  19 TMLcHQKLP.LARAVGLATANAL.....L.....SL.....P.....P....HA..PA.....SD
  20 AGL.VEERP.LLRALGVATANAL.....Lads..PS.....P.....D....VStvNA.....LE
  21 GML.GERNSdLGRTLGLATANAL.....La....SL.....Ph....P....PF..SR.....DE
  22 AWV.REFDP.YRATVGMAAVNAG.....I.....NR.....-.....-....LG..RL.....PD
  23 EKI.KSTHP.LERTMALALVNAL.....N.....YE.....Y.....A....LS..LP.....ED
  24 PWL.LSWNG.AEAAVGLAVVNAV.....V.....NRaspclR.....Q....AQ..PL.....HG
  25 ELS.RSWDP.FYSSLGIATVNSV.....I.....EG.....Gg....K....RC..NA.....FD
  26 DKA.DSLNI.IERTLGVAAINAV.....S.....QY.....Yi....D....LR..EAkw...ID
  27 ERI.DSLNV.IERTLGIAAVNAV.....S.....QY.....Hl....D....VS..DL.....PD
  28 NMA.DSFDI.VERTLGVAAINAV.....S.....QY.....YfnfeaN....GK..DA.....AE
  29 SG-.KIPSP.FADVIRLAAINAL.....Svp6qdGR.....Y.....D....FE..KS.....DD
  30 EEI.RSPDA.LRRSMGLACVNAM.....-.....NY.....H.....D....AS..GF.....PE
  31 AGL.KQEDL.VARALGMAAANAVa....R.....PE.....P.....G....HC..LE.....DP
  32 EGM.FADQA.LRRALGIAVLNAL.....Sa....TC.....W.....Q....VR..PP.....MN


                 100                110           120      
                  |                  |             |      
   1 .....V..I...FSDA...K...RV..EDR.MND...PFI.MSQNEVKGK...
   2 .....V..I...FSDA...K...RV..EDR.MND...PFI.MSQNEVKGKkvg
   3 .....V..I...FSDA...K...RV..EDR.MND...PFI.MSQNEVKGKkvg
   4 .....Q..V...FKVS...K...DS..ERA.--N...AFT.CFLPDIKNKkva
   5 .....Id.I...LDLI...K...PEd.RVA.MVG...YFA.PLVPKILKItnk
   6 .....L..P...PTQA...E...PL..SPY.GPGnlaVFE.YFLPMIRGKkva
   7 .....T..P...LMTP...G...SA..NLA.VFD...HFR.HHL--VDKKvvv
   8 .....R..P...LSS-...-...--..QPQ.M-N...AFT.CFQEQVRGKkvt
   9 .....N..G...LESFgv.K...GG..GTV.VIG...AFP.GIAERLPG-...
  10 .....L..A...FQES...K...DK..TVT.MVG...YFP.GYVDKFMKKarh
  11 .....V..L...MERG...A...GK..NVA.IVG...HF-.PFIPKVKKAvkn
  12 .....N..G...LESFgv.K...GG..GTV.VIG...AFP.GIAERLPG-...
  13 .....N..G...VKTF...R...HVagRVG.VIG...AFP.G-VDGILPN...
  14 .....N..G...VKTF...R...HVagRVG.VIG...AFP.G-VDGILPN...
  15 .....N..I...LDLI...K...PEd.KVA.MVG...YFG.PLVPRILKItek
  16 .....L..L...VERG...R...NK..RVA.LIG...HF-.PFVPALREAaeh
  17 .....D..I...LDLI...K...PGd.RVA.MIG...YFG.PLVPKILKItek
  18 .....L..L...IERG...A...GK..RVA.VVG...HF-.PFVPGLRRVare
  19 de...V..Igs.LDIG...A...DD..HVA.MVG...YFA.PVVAKIQKSgcr
  20 .....-..P...LRIT...P...SC..HVV.MVG...YFG.PLVRDLQNVgcr
  21 .....V..Iss.LSIA...P...QE..RVA.MVG...YFG.PIVAQLEKIgct
  22 .....G..V...TLAP...K...DG..AEN.NLA...VFE.HFLGEMRGKrvv
  23 kenr.A..L...FESFgigE...KT..RVA.MVG...YFA.PIAGMLGKMgal
  24 .....A..VpgnLSVF...E...HF..RPR.LEGqkvAVI.GHYPGLAQLwkd
  25 .....I..L...MEEC...R...NR..KIA.MVG...EFPrRYTDRIRTVsde
  26 .....VteL...IQQD...E...IK..RIA.IIG...NMP.PVVRTLKEKyev
  27 .....Vd.V...VELV...E...GFs.EVA.VIG...NMP.PVVRALREKgvk
  28 .....L..V...LNRD...D...IK..KIA.FVG...NMI.PVVNMLKKSekf
  29 .....LsdV...SHLF...T...GR..RVC.MVG...AIV.PLLKRFKKMgvs
  30 dstdrL..W...MDSF...GigsGT..RVA.MVG...FFR.PLMKLFRDRgal
  31 .....D..A...LTTV...-...PV..RPAdTVG...-LI.GFIRSIHRRieg
  32 .....Y..T...LKTG...A...NA..LD-.---...---.---------...