# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oo4A 111 7.27e-01 d.93.1.1 87185 1gz8A 299 1.08e+00 d.144.1.7 83405 1hcl 298 1.09e+00 1hcl d.144.1.7 41593 1neiA 60 1.27e+00 d.253.1.1 91843 1mgtA 174 1.38e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1rlzA 369 1.43e+00 c.31.1.1 104989 1a12A 413 2.54e+00 1a12A b.69.5.1 27663 1p0hA 318 2.59e+00 d.108.1.1 93866 1dhs 344 3.38e+00 1dhs c.31.1.1 31727 1s68A 249 3.50e+00 d.142.2.4 98591 2bzpA 226 3.53e+00 1g26A 31 3.59e+00 1g26A g.3.16.1 44381 1hxiA 121 3.93e+00 1hxiA a.118.8.1 61366 1jtdB 273 4.42e+00 b.69.5.2 67265 1pyaB 228 4.58e+00 1pyaB 1r9kA 172 4.66e+00 a.168.1.1 104869 2dcnA 311 6.05e+00 1wp1A 474 6.15e+00 2c27A 315 6.39e+00 2cqsA 842 6.52e+00 2au5A 139 6.68e+00 1sjdA 368 6.72e+00 c.1.11.2,d.54.1.1 105632,105633 1i4jA 110 7.14e+00 d.55.1.1 76734 2d4rA 147 7.23e+00 1s7zA 117 7.25e+00 a.159.3.1 98715 1vkcA 158 8.30e+00 1nm8A 616 8.54e+00 c.43.1.3,c.43.1.3 85872,85873 2olbA 517 8.78e+00 1jevA c.94.1.1 35721 1vquA 374 8.79e+00 1eny 268 9.44e+00 1eny c.2.1.2 29910 1azsB 212 9.50e+00 1azsA d.58.29.1 39423 1ew6A 137 1.10e+01 1ewaA a.1.1.2 15637 1axn 323 1.13e+01 1avc a.65.1.1 18149 1k24A 253 1.18e+01 f.4.4.2 72002 1t6eX 381 1.19e+01 b.50.1.2 106564 2aq8A 269 1.22e+01 1guqA 348 1.27e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1yn8A 59 1.29e+01 1xsnA 335 1.29e+01 1v54G 85 1.31e+01 f.23.2.1 100328 1womA 271 1.33e+01 1s7iA 124 1.34e+01 d.58.4.9 105353 2cu6A 103 1.48e+01 1fc6A 388 1.51e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1mugA 168 1.56e+01 1mugA c.18.1.2 31030 1m5yA 408 1.69e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1tufA 434 1.79e+01 b.49.2.3,c.1.6.1 107335,107336 1li5A 461 1.89e+01 a.27.1.1,c.26.1.1 73912,73913 1jetA 517 1.93e+01 1jevA c.94.1.1 35718 1ehiA 377 1.98e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1h0xA 100 2.06e+01 d.68.6.1 76451 1g99A 408 2.10e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1qqcA 773 2.12e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 2bkyA 97 2.13e+01 1sxvA 172 2.14e+01 1li5B 461 2.17e+01 a.27.1.1,c.26.1.1 73914,73915 1cyx 205 2.19e+01 1cyx b.6.1.2 23023 1p4oA 322 2.22e+01 d.144.1.7 87775 1smlA 269 2.25e+01 1smlA d.157.1.1 42053 2aioA 269 2.25e+01 1cyw 205 2.26e+01 1cyx b.6.1.2 23024 2bhvA 246 2.29e+01 1itwA 741 2.30e+01 c.77.1.2 76793 1twiA 434 2.47e+01 b.49.2.3,c.1.6.1 107399,107400 1xnpA 202 2.48e+01 1v8gA 329 2.70e+01 a.46.2.1,c.27.1.1 100505,100506 1rwrA 301 2.73e+01 b.80.1.11 97990 1l2uA 245 2.78e+01 c.1.2.3 73516 1edqA 540 2.84e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1wy6A 172 2.85e+01 1qhtA 775 2.98e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1gzsB 165 3.00e+01 a.168.1.1 76425 2axwA 134 3.20e+01 1ir3A 306 3.24e+01 1fmk d.144.1.7 41702 2fymA 431 3.24e+01 1wyuB 474 3.30e+01 1k92A 455 3.47e+01 c.26.2.1,d.210.1.1 68325,68326 1xqoA 256 3.49e+01 1i7qB 193 3.50e+01 1qdlB c.23.16.1 61902 1pp7U 131 3.57e+01 a.4.5.44 94973 1p2xA 159 3.61e+01 a.40.1.1 104062 1twuA 139 3.68e+01 d.32.1.8 107413 1t0bA 252 3.71e+01 c.23.16.6 106199 1jd5A 124 3.74e+01 g.52.1.1 66544 1ctn 540 3.77e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 1ykdA 398 4.04e+01 2ghjA 118 4.10e+01 1hjxA 362 4.18e+01 c.1.8.5,d.26.3.1 83512,83513 1puzA 82 4.20e+01 a.218.1.1 104320 1s12A 94 4.22e+01 1xzzA 246 4.27e+01 2bv2A 83 4.29e+01 1vzoA 355 4.35e+01 d.144.1.7 108971 2b1xA 470 4.37e+01 1yliA 153 4.43e+01 1bxeA 113 4.54e+01 1bxeA d.55.1.1 38898 2occG 84 4.56e+01 2occG f.23.2.1 43522 1kp8A 547 4.56e+01 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 1qnrA 344 4.67e+01 1qnoA c.1.8.3 28834 1e9lA 377 4.80e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1paqA 189 4.84e+01 a.118.1.14 94413 1iicA 422 4.87e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2au3A 407 4.97e+01 1cpcA 162 5.05e+01 1cpcA a.1.1.3 15643 1ecmA 109 5.07e+01 1ecmA a.130.1.1 19492 1b65A 375 5.08e+01 1b65A d.154.1.1 42020 1ff4A 65 5.08e+01 g.7.1.1 83251 1c7qA 445 5.09e+01 2pgi c.80.1.2 35307 1nu0A 138 5.10e+01 c.55.3.8 92165 1h03P 125 5.10e+01 g.18.1.1,g.18.1.1 83411,83412 1chuA 540 5.13e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1qo7A 394 5.24e+01 1qo7A c.69.1.11 34697 1vf8A 377 5.40e+01 1u14A 172 5.41e+01 c.51.4.3 107579 1xbbA 291 5.48e+01 1jl0A 334 5.55e+01 1jenA d.156.1.1 63155 1vhwA 253 5.60e+01 c.56.2.1 100706 1xjdA 345 5.61e+01 1pinA 163 5.75e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1jf2A 195 5.78e+01 1ej3A a.39.1.5 62930 2c1iA 431 5.81e+01 1wr2A 238 5.83e+01 2ajrA 331 5.88e+01 2bkyX 89 6.06e+01 1pkhA 204 6.18e+01 b.85.4.1 94832 1nrjB 218 6.24e+01 c.37.1.8 86125 1e94F 449 6.24e+01 1do0A c.37.1.20 32443 1w6tA 444 6.24e+01 1vr3A 191 6.29e+01 1uelB 48 6.51e+01 j.105.1.1 99266 1kb9D 246 6.53e+01 a.3.1.3,f.23.11.1 77317,77318 1yobA 179 6.58e+01 1n8vA 112 6.63e+01 a.118.21.1 85457 1q8yA 373 6.67e+01 d.144.1.7 96234 1ybzA 91 6.69e+01 1y60A 169 6.71e+01 1zc6A 305 6.75e+01 1zkiA 133 6.89e+01 1wdtA 665 6.95e+01 1w2lA 99 7.03e+01 2fwkA 121 7.06e+01 1wdvA 152 7.07e+01 1qv1A 195 7.07e+01 a.39.1.5 96347 1xm9A 457 7.23e+01 1v54B 227 7.36e+01 b.6.1.2,f.17.2.1 100322,100323 2ddrA 306 7.37e+01 1zyeA 220 7.43e+01 1iyxA 432 7.43e+01 c.1.11.1,d.54.1.1 83815,83816 1u59A 287 7.45e+01 d.144.1.7 107681 1ezvD 245 7.52e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 1thv 207 7.56e+01 1thv b.25.1.1 23904 1fvrA 327 7.67e+01 d.144.1.7 60047 2gmyA 153 7.69e+01 1d0qA 103 7.86e+01 1d0qA g.41.3.2 45208 2bcqA 335 7.95e+01 1th1C 179 7.97e+01 1augA 215 7.97e+01 1a2zA c.56.4.1 33798 1x3mA 415 7.99e+01 4tmkA 213 8.12e+01 5tmpA c.37.1.1 31930 2blrA 206 8.15e+01 1rqwA 207 8.17e+01 b.25.1.1 97781 1suuA 312 8.19e+01 b.68.10.1 99006 1sur 215 8.23e+01 1sur c.26.2.2 31620 1q06A 135 8.59e+01 a.6.1.3 95493 1deoA 233 8.69e+01 1deoA c.23.10.4 31345 1tn3 137 8.83e+01 1htn d.169.1.1 42423 1q5qA 259 8.89e+01 d.153.1.4 95904 1jpmA 366 8.94e+01 c.1.11.2,d.54.1.1 67031,67032 1uayA 242 8.96e+01 c.2.1.2 88390 1ytqA 204 8.99e+01