# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bzpA 226 5.39e-01 1twiA 434 5.55e-01 b.49.2.3,c.1.6.1 107399,107400 1oo4A 111 5.91e-01 d.93.1.1 87185 1tufA 434 7.31e-01 b.49.2.3,c.1.6.1 107335,107336 1a12A 413 7.88e-01 1a12A b.69.5.1 27663 1mgtA 174 1.27e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1neiA 60 1.35e+00 d.253.1.1 91843 1i4jA 110 1.72e+00 d.55.1.1 76734 1rlzA 369 2.30e+00 c.31.1.1 104989 1wp1A 474 3.05e+00 1dhs 344 3.17e+00 1dhs c.31.1.1 31727 1wy6A 172 3.95e+00 1bxeA 113 4.19e+00 1bxeA d.55.1.1 38898 2dcnA 311 4.30e+00 1nh9A 87 4.44e+00 d.68.6.1 91878 1s7zA 117 5.71e+00 a.159.3.1 98715 1jtdB 273 6.01e+00 b.69.5.2 67265 1u2eA 289 6.16e+00 1r9kA 172 6.39e+00 a.168.1.1 104869 1sjdA 368 7.38e+00 c.1.11.2,d.54.1.1 105632,105633 1hjxA 362 7.39e+00 c.1.8.5,d.26.3.1 83512,83513 1mugA 168 7.54e+00 1mugA c.18.1.2 31030 1iznB 277 7.84e+00 e.43.1.2 83848 1s14A 194 8.32e+00 d.122.1.2 98329 1ir3A 306 8.68e+00 1fmk d.144.1.7 41702 1g99A 408 9.33e+00 1g99A c.55.1.2,c.55.1.2 33457,33458 1g26A 31 9.59e+00 1g26A g.3.16.1 44381 1s3eA 520 9.89e+00 c.3.1.2,d.16.1.5 98426,98427 1h1aA 191 1.17e+01 b.29.1.11 83450 2au5A 139 1.19e+01 2axwA 134 1.21e+01 1hdhA 536 1.24e+01 c.76.1.2 65805 1xnkA 196 1.26e+01 1y43A 39 1.26e+01 2a19B 284 1.29e+01 1gz8A 299 1.30e+01 d.144.1.7 83405 1xsnA 335 1.32e+01 1hcl 298 1.37e+01 1hcl d.144.1.7 41593 1axn 323 1.45e+01 1avc a.65.1.1 18149 1v54G 85 1.51e+01 f.23.2.1 100328 1jf2A 195 1.54e+01 1ej3A a.39.1.5 62930 1s7iA 124 1.55e+01 d.58.4.9 105353 1m5yA 408 1.68e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1k24A 253 1.77e+01 f.4.4.2 72002 1uayA 242 1.79e+01 c.2.1.2 88390 1zyeA 220 1.86e+01 1nm8A 616 1.86e+01 c.43.1.3,c.43.1.3 85872,85873 1wr2A 238 1.87e+01 2cu6A 103 1.96e+01 2bkkA 264 2.02e+01 1x3mA 415 2.05e+01 1jl0A 334 2.07e+01 1jenA d.156.1.1 63155 1s68A 249 2.07e+01 d.142.2.4 98591 1ojaA 520 2.12e+01 c.3.1.2,d.16.1.5 93096,93097 1womA 271 2.16e+01 1rypB 250 2.23e+01 1rypB d.153.1.4 41933 2c27A 315 2.29e+01 1el4A 195 2.31e+01 1ej3A a.39.1.5 59453 1p4oA 322 2.32e+01 d.144.1.7 87775 2ghjA 118 2.38e+01 1cyw 205 2.43e+01 1cyx b.6.1.2 23024 1d0qA 103 2.44e+01 1d0qA g.41.3.2 45208 1ew6A 137 2.46e+01 1ewaA a.1.1.2 15637 1e94F 449 2.47e+01 1do0A c.37.1.20 32443 1azsB 212 2.58e+01 1azsA d.58.29.1 39423 1cyx 205 2.60e+01 1cyx b.6.1.2 23023 1xqoA 256 2.63e+01 1yhvA 297 2.65e+01 2occG 84 2.69e+01 2occG f.23.2.1 43522 1hxiA 121 2.75e+01 1hxiA a.118.8.1 61366 1rgyA 360 2.75e+01 e.3.1.1 97456 1y60A 169 2.84e+01 2au3A 407 2.85e+01 1qv1A 195 2.89e+01 a.39.1.5 96347 1ppn 212 2.90e+01 1cs8A d.3.1.1 37004 1itwA 741 2.91e+01 c.77.1.2 76793 1edqA 540 3.05e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 2cioA 212 3.06e+01 1khqA 212 3.06e+01 d.3.1.1 90964 1owqA 361 3.11e+01 c.1.8.5,d.26.3.1 104041,104042 1wwiA 148 3.14e+01 1fc6A 388 3.22e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 2abqA 306 3.22e+01 1yliA 153 3.22e+01 1paqA 189 3.32e+01 a.118.1.14 94413 1pmnA 364 3.34e+01 d.144.1.7 94907 1puzA 82 3.36e+01 a.218.1.1 104320 1to6A 371 3.39e+01 c.141.1.1 107170 1nmeA 146 3.44e+01 c.17.1.1 85874 2gmyA 153 3.46e+01 1ctn 540 3.47e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 2viuA 328 3.47e+01 1hgeA b.19.1.2 23797 1vr3A 191 3.49e+01 1th1C 179 3.50e+01 1zvnA 99 3.53e+01 1yn8A 59 3.54e+01 2bkyA 97 3.55e+01 1twjA 84 3.59e+01 d.284.1.1 107407 2d4rA 147 3.61e+01 2kfnA 605 3.66e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 1t4aA 84 3.70e+01 d.284.1.1 106404 1th0A 226 3.76e+01 d.3.1.7 106903 1dgnA 89 3.82e+01 1dgnA a.77.1.3 18436 1u14A 172 3.86e+01 c.51.4.3 107579 1rwrA 301 3.92e+01 b.80.1.11 97990 1rypJ 204 3.93e+01 d.153.1.4 41878 2bhvA 246 3.93e+01 1lnsA 763 3.93e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1uwkA 557 3.94e+01 e.51.1.1 108065 1h0xA 100 4.08e+01 d.68.6.1 76451 2f4nA 273 4.13e+01 2gcuA 245 4.38e+01 1p0hA 318 4.56e+01 d.108.1.1 93866 1twuA 139 4.72e+01 d.32.1.8 107413 1xhkA 187 4.88e+01 1nj4A 363 4.93e+01 b.105.1.1,e.3.1.1 80545,80546 1wv8A 73 4.94e+01 1s6xA 34 5.23e+01 1p97A 114 5.27e+01 d.110.3.7 94382 1sg4A 260 5.36e+01 1rztA 331 5.40e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1h8dL 29 5.45e+01 b.47.1.2 60737 1wvqA 167 5.54e+01 1gteA 1025 5.70e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1h7wA 1025 5.71e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1pp7U 131 5.74e+01 a.4.5.44 94973 1tn3 137 5.82e+01 1htn d.169.1.1 42423 1kicA 339 5.90e+01 c.70.1.1 72510 1guqA 348 5.94e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 2bcqA 335 5.96e+01 1vkcA 158 6.12e+01 1gkzA 388 6.16e+01 a.29.5.1,d.122.1.4 65268,65269 1j7lA 264 6.23e+01 d.144.1.6 62697 1jilA 420 6.30e+01 c.26.1.1 66745 1zmmA 33 6.34e+01 1na6A 404 6.48e+01 b.142.1.1,c.52.1.22 91748,91749 2b4gA 317 6.50e+01 1pmmA 466 6.53e+01 c.67.1.6 94901 1np7A 489 6.54e+01 a.99.1.1,c.28.1.1 80677,80678 1nu0A 138 6.61e+01 c.55.3.8 92165 1wyuB 474 6.62e+01 1s12A 94 6.67e+01 2cqsA 842 6.73e+01 1vlaA 150 6.74e+01 d.227.1.2 108735 1q5qA 259 6.84e+01 d.153.1.4 95904 2bvaA 292 6.94e+01 1xuqA 212 7.00e+01 1ryp1 222 7.24e+01 1ryp1 1zc6A 305 7.36e+01 1l2uA 245 7.38e+01 c.1.2.3 73516 1i7qB 193 7.44e+01 1qdlB c.23.16.1 61902 1uhkA 191 7.63e+01 1gzsB 165 7.66e+01 a.168.1.1 76425 1kaeA 434 7.81e+01 c.82.1.2 72247 1b04A 318 7.88e+01 1b04A d.142.2.2 41579 1iicA 422 7.93e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2a5lA 200 8.00e+01 1vbuA 328 8.03e+01 1iz0A 302 8.16e+01 b.35.1.2,c.2.1.1 83821,83822 1zkiA 133 8.29e+01 1brwA 433 8.30e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2fymA 431 8.51e+01 1w98B 283 8.72e+01 1li5A 461 8.75e+01 a.27.1.1,c.26.1.1 73912,73913 1flcB 175 8.77e+01 1flcB h.3.1.1 45716 1v54B 227 8.84e+01 b.6.1.2,f.17.2.1 100322,100323 1xbbA 291 8.94e+01