# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tufA 434 8.16e-02 b.49.2.3,c.1.6.1 107335,107336 1rlzA 369 1.04e-01 c.31.1.1 104989 1twiA 434 1.14e-01 b.49.2.3,c.1.6.1 107399,107400 1dhs 344 1.51e-01 1dhs c.31.1.1 31727 1i4jA 110 2.43e-01 d.55.1.1 76734 1g99A 408 4.22e-01 1g99A c.55.1.2,c.55.1.2 33457,33458 1a12A 413 6.56e-01 1a12A b.69.5.1 27663 1bxeA 113 6.83e-01 1bxeA d.55.1.1 38898 1oo4A 111 1.15e+00 d.93.1.1 87185 1wp1A 474 1.48e+00 1pmnA 364 1.51e+00 d.144.1.7 94907 1nh9A 87 1.52e+00 d.68.6.1 91878 1ew6A 137 1.62e+00 1ewaA a.1.1.2 15637 1s14A 194 1.71e+00 d.122.1.2 98329 1neiA 60 1.80e+00 d.253.1.1 91843 1sjdA 368 1.98e+00 c.1.11.2,d.54.1.1 105632,105633 1r9kA 172 1.99e+00 a.168.1.1 104869 1hcl 298 2.17e+00 1hcl d.144.1.7 41593 1ir3A 306 2.27e+00 1fmk d.144.1.7 41702 1gz8A 299 2.29e+00 d.144.1.7 83405 2a19B 284 2.46e+00 1jtdB 273 2.47e+00 b.69.5.2 67265 1xqoA 256 2.50e+00 1x3mA 415 2.50e+00 2bzpA 226 2.80e+00 2bkyA 97 3.31e+00 1c7qA 445 3.34e+00 2pgi c.80.1.2 35307 2dcnA 311 3.43e+00 1y43A 39 3.62e+00 1h0xA 100 3.79e+00 d.68.6.1 76451 2bvaA 292 3.82e+00 1yhvA 297 3.99e+00 1ctn 540 4.13e+00 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 2au5A 139 4.36e+00 1s5dA 240 4.64e+00 d.166.1.1 98541 1p4oA 322 4.72e+00 d.144.1.7 87775 1uayA 242 4.73e+00 c.2.1.2 88390 1edqA 540 5.34e+00 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1lnsA 763 5.56e+00 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1wdpA 495 5.75e+00 1m5yA 408 6.02e+00 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1q6cA 495 6.16e+00 c.1.8.1 95970 1g26A 31 6.29e+00 1g26A g.3.16.1 44381 1f3mC 297 6.71e+00 1hcl d.144.1.7 41677 1mgtA 174 6.95e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 2aehA 369 7.45e+00 1hxiA 121 7.85e+00 1hxiA a.118.8.1 61366 1guqA 348 7.97e+00 1guqA d.13.1.2,d.13.1.2 37522,37523 1wdvA 152 8.08e+00 1v54G 85 8.30e+00 f.23.2.1 100328 1hjxA 362 8.44e+00 c.1.8.5,d.26.3.1 83512,83513 1byb 495 8.52e+00 1byb c.1.8.1 28790 2fdbM 164 8.79e+00 1v3hA 495 8.90e+00 c.1.8.1 108303 1pvgA 418 9.70e+00 d.14.1.3,d.122.1.2 95161,95162 2bdwA 362 1.00e+01 1l2uA 245 1.02e+01 c.1.2.3 73516 1womA 271 1.06e+01 1xsnA 335 1.06e+01 1y60A 169 1.11e+01 1u2eA 289 1.13e+01 1tn3 137 1.14e+01 1htn d.169.1.1 42423 1axn 323 1.17e+01 1avc a.65.1.1 18149 1s7iA 124 1.21e+01 d.58.4.9 105353 1d2kA 392 1.23e+01 1d2kA c.1.8.5,d.26.3.1 29008,38442 1yliA 153 1.27e+01 1wwiA 148 1.32e+01 1ll7A 392 1.33e+01 c.1.8.5,d.26.3.1 78085,78086 2al6A 375 1.34e+01 1s7zA 117 1.34e+01 a.159.3.1 98715 1gzsB 165 1.40e+01 a.168.1.1 76425 1itwA 741 1.58e+01 c.77.1.2 76793 1twjA 84 1.59e+01 d.284.1.1 107407 2cqsA 842 1.59e+01 1rwrA 301 1.62e+01 b.80.1.11 97990 1rypB 250 1.66e+01 1rypB d.153.1.4 41933 2occG 84 1.66e+01 2occG f.23.2.1 43522 1d0qA 103 1.68e+01 1d0qA g.41.3.2 45208 1mugA 168 1.69e+01 1mugA c.18.1.2 31030 1augA 215 1.77e+01 1a2zA c.56.4.1 33798 1el6A 219 1.79e+01 1el6B d.182.1.1 42606 1k24A 253 1.79e+01 f.4.4.2 72002 1chkA 238 1.81e+01 1chkA d.2.1.7 36999 1t4aA 84 1.81e+01 d.284.1.1 106404 1nu0A 138 1.85e+01 c.55.3.8 92165 2cioA 212 1.85e+01 1khqA 212 1.88e+01 d.3.1.1 90964 2aa4A 289 1.93e+01 1th8A 145 1.97e+01 d.122.1.3 106908 1vq3A 94 2.00e+01 1e94F 449 2.01e+01 1do0A c.37.1.20 32443 1n8vA 112 2.10e+01 a.118.21.1 85457 1ppn 212 2.16e+01 1cs8A d.3.1.1 37004 1e9lA 377 2.24e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1to6A 371 2.25e+01 c.141.1.1 107170 2bhvA 246 2.26e+01 2gmyA 153 2.27e+01 2axwA 134 2.33e+01 1owqA 361 2.35e+01 c.1.8.5,d.26.3.1 104041,104042 2f57A 317 2.38e+01 1ykdA 398 2.38e+01 1v9nA 360 2.39e+01 1vf8A 377 2.40e+01 1ryp1 222 2.41e+01 1ryp1 1sazA 381 2.47e+01 1vhxA 150 2.52e+01 c.55.3.8 100712 1udh 244 2.60e+01 3eugA c.18.1.1 31015 1h6kZ 98 2.60e+01 d.58.7.1 60686 1mq4A 272 2.66e+01 d.144.1.7 91391 2bkyX 89 2.66e+01 1puzA 82 2.66e+01 a.218.1.1 104320 2a5lA 200 2.69e+01 1udvA 89 2.71e+01 d.68.6.1 99224 1wxrA 1048 2.72e+01 1np7A 489 2.82e+01 a.99.1.1,c.28.1.1 80677,80678 1wy6A 172 2.94e+01 1id0A 152 3.01e+01 d.122.1.3 66111 2c30A 321 3.05e+01 1th1C 179 3.11e+01 1wzlA 585 3.14e+01 2au3A 407 3.14e+01 1bco 327 3.19e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1zkiA 133 3.20e+01 1i2tA 61 3.31e+01 1i2tA a.144.1.1 61582 1to2I 64 3.33e+01 2feaA 236 3.38e+01 1t46A 313 3.40e+01 d.144.1.7 106397 1blxA 326 3.44e+01 1hcl d.144.1.7 41596 2ghjA 118 3.45e+01 1fc6A 388 3.46e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 1qlmA 316 3.47e+01 1qlmA d.147.1.1 41765 2c4bA 143 3.48e+01 1b04A 318 3.48e+01 1b04A d.142.2.2 41579 1xjdA 345 3.50e+01 1vkcA 158 3.54e+01 1uwkA 557 3.64e+01 e.51.1.1 108065 1zvnA 99 3.66e+01 1jf2A 195 3.66e+01 1ej3A a.39.1.5 62930 1u9lA 70 3.67e+01 a.60.4.2 107751 1hgxA 183 3.75e+01 1tc1A c.61.1.1 34027 1pmmA 466 3.80e+01 c.67.1.6 94901 1qr0A 228 3.81e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1ve2A 235 3.83e+01 1q5qA 259 3.84e+01 d.153.1.4 95904 1wmwA 330 4.00e+01 1lw6I 64 4.08e+01 d.40.1.1 74294 1nm8A 616 4.18e+01 c.43.1.3,c.43.1.3 85872,85873 1zavA 180 4.26e+01 1xreA 217 4.31e+01 1kaeA 434 4.34e+01 c.82.1.2 72247 1ig8A 486 4.40e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1vflA 356 4.43e+01 1sur 215 4.46e+01 1sur c.26.2.2 31620 1obr 326 4.49e+01 1aye c.56.5.2 33828 1w1iE 357 4.52e+01 c.1.9.1 109051 1y08A 323 4.55e+01 2bkkA 264 4.56e+01 1yn8A 59 4.60e+01 2ac5A 316 4.61e+01 1przA 252 4.65e+01 d.265.1.3 95064 1ekgA 127 4.68e+01 1dlxA d.82.2.1 40021 1ehiA 377 4.71e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1vzoA 355 4.73e+01 d.144.1.7 108971 1zmmA 33 4.73e+01 1xuqA 212 4.74e+01 1q8dA 108 4.76e+01 a.228.1.1 104554 1qqcA 773 4.81e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 1u14A 172 4.83e+01 c.51.4.3 107579 1xpjA 126 4.94e+01 1dljA 402 4.98e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2d2mD 145 5.00e+01 1pp7U 131 5.02e+01 a.4.5.44 94973 1xbbA 291 5.12e+01 1sxvA 172 5.18e+01 1s3eA 520 5.19e+01 c.3.1.2,d.16.1.5 98426,98427 1yw5A 177 5.25e+01 2olbA 517 5.28e+01 1jevA c.94.1.1 35721 1cyx 205 5.28e+01 1cyx b.6.1.2 23023 1hdhA 536 5.30e+01 c.76.1.2 65805 1wyuB 474 5.33e+01 1wu7A 434 5.38e+01 1xm9A 457 5.44e+01 1vr3A 191 5.49e+01 1rztA 331 5.51e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1fvrA 327 5.53e+01 d.144.1.7 60047 1qv1A 195 5.55e+01 a.39.1.5 96347 1oxnA 140 5.57e+01 g.52.1.1 93704 1rypJ 204 5.66e+01 d.153.1.4 41878 1xxaA 78 5.71e+01 1xxaA d.74.2.1 39700 1yqtA 538 5.73e+01 2f9dA 125 5.75e+01 1uch 230 5.77e+01 1uch d.3.1.6 37129 1h1aA 191 5.90e+01 b.29.1.11 83450 1el4A 195 5.90e+01 1ej3A a.39.1.5 59453 1ojaA 520 5.93e+01 c.3.1.2,d.16.1.5 93096,93097 1fkx 349 5.99e+01 1a4mA c.1.9.1 29018 1vlaA 150 6.00e+01 d.227.1.2 108735 1su4A 994 6.01e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1twuA 139 6.04e+01 d.32.1.8 107413 2c27A 315 6.05e+01 2d1eA 248 6.14e+01 1cyw 205 6.17e+01 1cyx b.6.1.2 23024 1k1vA 41 6.19e+01 a.37.1.1 71999 1g0uL 241 6.23e+01 d.153.1.4 41894 1mmiA 366 6.25e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 1p97A 114 6.26e+01 d.110.3.7 94382 1jetA 517 6.31e+01 1jevA c.94.1.1 35718 1a4mA 349 6.36e+01 1a4mA c.1.9.1 29014 1h8dL 29 6.38e+01 b.47.1.2 60737 1utyA 187 6.41e+01 b.147.1.1 108036 1xhkA 187 6.46e+01 1ckiA 317 6.51e+01 1csn d.144.1.7 41660 1sdjA 310 6.52e+01 d.21.1.2,d.21.1.2 98807,98808 1ihgA 370 6.52e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 4eugA 229 6.53e+01 3eugA c.18.1.1 31019 1b0nA 111 6.55e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1xnkA 196 6.56e+01 1czaN 917 6.61e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1anf 370 6.74e+01 4mbp c.94.1.1 35776 2azpA 318 6.78e+01 1xfsA 178 6.78e+01 d.129.3.5 109589 1sx5A 244 6.86e+01 c.52.1.2 99023 2gcuA 245 6.90e+01 1ok7A 366 6.94e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1jilA 420 6.97e+01 c.26.1.1 66745 1k7kA 221 7.00e+01 c.51.4.1 72104 1knyA 253 7.11e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1uasA 362 7.17e+01 b.71.1.1,c.1.8.1 88388,88389 1s3iA 310 7.19e+01 b.46.1.1,c.65.1.1 98435,98436 1vajA 214 7.28e+01 1ehyA 294 7.29e+01 1ehyA c.69.1.11 34693 1c4xA 285 7.31e+01 1c4xA c.69.1.10 34684 1xd3A 230 7.33e+01 1v7rA 186 7.40e+01 c.51.4.1 100482 1rwzA 245 7.52e+01 d.131.1.2,d.131.1.2 98005,98006 1ei1A 391 7.54e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1suuA 312 7.54e+01 b.68.10.1 99006 1rvaA 244 7.56e+01 1rvaA c.52.1.2 33240 1wv8A 73 7.58e+01 1azsB 212 7.62e+01 1azsA d.58.29.1 39423 1nwwA 149 7.68e+01 d.17.4.8 86306 1p2xA 159 7.70e+01 a.40.1.1 104062 1h03P 125 7.74e+01 g.18.1.1,g.18.1.1 83411,83412 1ytvA 366 7.82e+01 1iscA 192 7.83e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1vg5A 73 7.89e+01 1pb6A 212 7.91e+01 a.4.1.9,a.121.1.1 88017,88018 1uelB 48 7.93e+01 j.105.1.1 99266 1omp 370 7.93e+01 4mbp c.94.1.1 35778 4mbp 370 7.94e+01 4mbp c.94.1.1 35777 1gw5A 621 7.97e+01 a.118.1.10 70629 1dd3C 32 7.98e+01 1dd3C a.108.1.1 19033 1zetA 388 8.01e+01 1akz 223 8.03e+01 3eugA c.18.1.1 31007 1qntA 176 8.05e+01 1sfe a.4.2.1,c.55.7.1 16074,33749 1paqA 189 8.10e+01 a.118.1.14 94413 1l6pA 125 8.11e+01 b.1.17.1 73626 1v9fA 325 8.44e+01 d.265.1.3 108448 1v7zA 260 8.51e+01 c.125.1.1 100488 2aw4Q 117 8.55e+01 1wr2A 238 8.60e+01 1u59A 287 8.62e+01 d.144.1.7 107681 1vzmA 45 8.65e+01 1z96A 40 8.65e+01 1egpA 45 8.69e+01 1egpA d.40.1.1 38561 1qyaA 307 8.70e+01 d.21.1.2,d.21.1.2 104653,104654 1ox3A 109 8.73e+01 h.1.17.1 93668 1ac5 483 8.80e+01 1ac5 c.69.1.5 34653 1qpcA 279 8.82e+01 1fgkA d.144.1.7 41685 1kx5B 102 8.83e+01 a.22.1.1 77594 1bmv2 374 8.84e+01 1bmv2 1va4A 279 8.95e+01 c.69.1.12 108458