# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fjbA 643 7.16e-01 1jnrA 643 7.85e-01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1u8vA 490 8.37e-01 1tx2A 297 2.92e+00 c.1.21.1 107420 1oi2A 366 4.13e+00 c.119.1.2 103802 1ad1A 266 4.41e+00 1aj2 c.1.21.1 29668 1ad4A 266 4.53e+00 1aj2 c.1.21.1 29670 1x8hA 228 4.90e+00 1c4xA 285 5.13e+00 1c4xA c.69.1.10 34684 1x8gA 227 5.70e+00 1to6A 371 6.49e+00 c.141.1.1 107170 1a12A 413 7.35e+00 1a12A b.69.5.1 27663 1cl8A 276 7.58e+00 1ckqA c.52.1.1 33230 1g9gA 629 8.79e+00 a.102.1.2 83279 1zcoA 262 8.93e+00 2d09A 407 9.04e+00 1xiuA 230 9.15e+00 1wstA 417 9.18e+00 1b43A 340 9.39e+00 1a76 a.60.7.1,c.120.1.2 18092,33362 1wy6A 172 1.01e+01 1faeA 629 1.04e+01 1fce a.102.1.2 18837 2d0eA 407 1.09e+01 1bn7A 294 1.10e+01 1bn6A c.69.1.8 34677 1nm8A 616 1.11e+01 c.43.1.3,c.43.1.3 85872,85873 1rlr 761 1.22e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1ru3A 732 1.22e+01 e.26.1.3 97835 1xi3A 215 1.27e+01 c.1.3.1 109601 1cf2O 337 1.28e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1s1fA 406 1.30e+01 1vbuA 328 1.31e+01 2b4vA 468 1.33e+01 1wmaA 276 1.35e+01 1t1uA 639 1.45e+01 2tysA 268 1.46e+01 2tysA c.1.2.4 28572 1gr0A 367 1.47e+01 c.2.1.3,d.81.1.3 70379,70380 2bzpA 226 1.49e+01 1sjdA 368 1.66e+01 c.1.11.2,d.54.1.1 105632,105633 1wzaA 488 1.68e+01 1y08A 323 1.92e+01 1a76 326 1.94e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1ei1A 391 2.05e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1wpnA 188 2.07e+01 1d2mA 665 2.18e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 2etvA 346 2.18e+01 1xqoA 256 2.31e+01 2bvyA 475 2.31e+01 1tufA 434 2.34e+01 b.49.2.3,c.1.6.1 107335,107336 1zsyA 357 2.36e+01 1akz 223 2.41e+01 3eugA c.18.1.1 31007 1ys4A 354 2.43e+01 1v0lA 313 2.47e+01 c.1.8.3 108207 1kfcA 268 2.49e+01 c.1.2.4 77371 1vkwA 218 2.49e+01 d.90.1.2 108695 1txgA 335 2.54e+01 1ii5A 233 2.64e+01 c.94.1.1 62412 1oc7A 364 2.65e+01 c.6.1.1 86794 1mgtA 174 2.79e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1od8A 313 2.87e+01 c.1.8.3 86838 1k20A 310 2.90e+01 c.107.1.1 68027 1twiA 434 2.93e+01 b.49.2.3,c.1.6.1 107399,107400 1w98B 283 2.93e+01 1vp4A 425 2.97e+01 2cw6A 298 2.98e+01 1x8mA 288 3.09e+01 b.82.1.13 109516 1uayA 242 3.15e+01 c.2.1.2 88390 1brwA 433 3.16e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1d3gA 367 3.18e+01 1d3gA c.1.4.1 28600 1n57A 291 3.29e+01 c.23.16.2 85328 1hrkA 359 3.38e+01 1hrkA c.92.1.1 61228 1eyeA 280 3.39e+01 1aj2 c.1.21.1 29672 2akaB 299 3.43e+01 1t5oA 351 3.61e+01 c.124.1.5 106459 2bvwA 362 3.75e+01 1bvwA c.6.1.1 30666 1ptvA 321 3.81e+01 1pty c.45.1.2 32665 1gwiA 411 3.87e+01 a.104.1.1 76364 1wvqA 167 3.87e+01 1mvcA 240 3.94e+01 a.123.1.1 79499 1cyj 90 4.14e+01 1ctj a.3.1.1 15805 2b0mA 393 4.15e+01 1ve3A 227 4.18e+01 1gegA 256 4.38e+01 1ybvA c.2.1.2 29888 1nrwA 288 4.40e+01 c.108.1.10 86128 1pa1A 310 4.43e+01 c.45.1.2 94404 1g60A 260 4.47e+01 c.66.1.11 70151 1g7fA 298 4.56e+01 1pty c.45.1.2 60330 1w44A 331 4.63e+01 1qlpA 394 4.65e+01 1ovaA e.1.1.1 42628 2f71A 298 4.67e+01 1r0kA 388 4.78e+01 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1rwrA 301 4.96e+01 b.80.1.11 97990 1kpgA 287 5.19e+01 c.66.1.18 68735 1rwtA 232 5.40e+01 f.43.1.1 97992 1xhkA 187 5.42e+01 1e3dA 266 5.43e+01 2frvA e.19.1.1 59188 1aj2 282 5.56e+01 1aj2 c.1.21.1 29665 1vl8A 267 5.57e+01 c.2.1.2 108733 1qopA 268 5.60e+01 2tysA c.1.2.4 28570 1jj2I 145 5.63e+01 1ffkG c.21.1.1 63094 1ua7A 422 5.68e+01 b.71.1.1,c.1.8.1 107759,107760 1r2rA 248 5.70e+01 c.1.1.1 96875 2booA 247 5.80e+01 1xg5A 279 6.02e+01 1lj5A 379 6.03e+01 e.1.1.1 73928 1vj7A 393 6.10e+01 a.211.1.1,d.218.1.8 100801,100802 1x88A 359 6.18e+01 7atjA 308 6.18e+01 1bgp a.93.1.1 18673 1ju8A 37 6.22e+01 g.3.6.4 84231 2fz4A 237 6.31e+01 1syyA 346 6.39e+01 a.25.1.2 106126 1x6vA 630 6.40e+01 1uumA 372 6.46e+01 c.1.4.1 100010 1oaoC 729 6.53e+01 e.26.1.3 86746 1e0wA 313 6.60e+01 1taxA c.1.8.3 59150 1vhqA 232 6.70e+01 c.23.16.2 100696 1s12A 94 6.72e+01 1a8q 274 6.93e+01 1brt c.69.1.12 34702 1tp9A 162 7.10e+01 1jtdB 273 7.16e+01 b.69.5.2 67265 1pn0A 665 7.17e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1vggA 161 7.21e+01 2ax4A 198 7.24e+01 1gwuA 309 7.28e+01 a.93.1.1 83351 1k92A 455 7.41e+01 c.26.2.1,d.210.1.1 68325,68326 1t94A 459 7.41e+01 d.240.1.1,e.8.1.7 106701,106702 2cw5A 255 7.46e+01 1c4oA 664 7.52e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1dusA 194 7.61e+01 1dusA c.66.1.4 34182 2abbA 364 7.63e+01 1xl7A 612 7.63e+01 2cxxA 190 7.73e+01 1y0bA 197 7.78e+01 1xyzA 347 7.90e+01 1taxA c.1.8.3 28804 1gdvA 85 7.90e+01 1ctj a.3.1.1 60458 1xruA 282 8.00e+01 1ydnA 295 8.28e+01 1yyaA 250 8.33e+01 1uedA 406 8.43e+01 a.104.1.1 99256 1eceA 358 8.65e+01 1eceA c.1.8.3 28813 1o5xA 248 8.65e+01 c.1.1.1 92528 1tffA 234 8.68e+01 d.3.1.11 106854 2bo4A 397 8.72e+01 1aboA 62 8.82e+01 1bbzA b.34.2.1 24474 2apjA 260 8.85e+01 1uok 558 8.91e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1h5qA 265 8.95e+01 1cydA c.2.1.2 60643