make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0320' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0320.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0320/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173373588 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.18006 sec, elapsed time= 6.30849 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.25805 sec, elapsed time= 6.55689 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0320 numbered 1 through 306 Created new target T0320 from T0320.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0320.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0320.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0320.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 9.1926 sec, elapsed time= 10.0497 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.80065 # GDT_score(maxd=8,maxw=2.9)= -5.25406 # GDT_score(maxd=8,maxw=3.2)= -5.12914 # GDT_score(maxd=8,maxw=3.5)= -5.00466 # GDT_score(maxd=10,maxw=3.8)= -5.52365 # GDT_score(maxd=10,maxw=4)= -5.4179 # GDT_score(maxd=10,maxw=4.2)= -5.31287 # GDT_score(maxd=12,maxw=4.3)= -5.82356 # GDT_score(maxd=12,maxw=4.5)= -5.70482 # GDT_score(maxd=12,maxw=4.7)= -5.58607 # GDT_score(maxd=14,maxw=5.2)= -5.77871 # GDT_score(maxd=14,maxw=5.5)= -5.59273 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_397317943.pdb -s /var/tmp/to_scwrl_397317943.seq -o /var/tmp/from_scwrl_397317943.pdb > /var/tmp/scwrl_397317943.log Error: can't open any of /var/tmp/from_scwrl_397317943.pdb or /var/tmp/from_scwrl_397317943_b.pdb or /var/tmp/from_scwrl_397317943_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.47386 # GDT_score(maxd=8,maxw=2.9)= -5.06996 # GDT_score(maxd=8,maxw=3.2)= -4.9623 # GDT_score(maxd=8,maxw=3.5)= -4.85126 # GDT_score(maxd=10,maxw=3.8)= -5.30638 # GDT_score(maxd=10,maxw=4)= -5.2208 # GDT_score(maxd=10,maxw=4.2)= -5.13247 # GDT_score(maxd=12,maxw=4.3)= -5.68896 # GDT_score(maxd=12,maxw=4.5)= -5.58303 # GDT_score(maxd=12,maxw=4.7)= -5.47868 # GDT_score(maxd=14,maxw=5.2)= -5.74281 # GDT_score(maxd=14,maxw=5.5)= -5.56911 # command:# request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_243479507.pdb -s /var/tmp/to_scwrl_243479507.seq -o /var/tmp/from_scwrl_243479507.pdb > /var/tmp/scwrl_243479507.log Error: can't open any of /var/tmp/from_scwrl_243479507.pdb or /var/tmp/from_scwrl_243479507_b.pdb or /var/tmp/from_scwrl_243479507_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.55556 # GDT_score(maxd=8,maxw=2.9)= -5.28628 # GDT_score(maxd=8,maxw=3.2)= -5.15834 # GDT_score(maxd=8,maxw=3.5)= -5.03407 # GDT_score(maxd=10,maxw=3.8)= -5.43205 # GDT_score(maxd=10,maxw=4)= -5.34018 # GDT_score(maxd=10,maxw=4.2)= -5.24419 # GDT_score(maxd=12,maxw=4.3)= -5.74477 # GDT_score(maxd=12,maxw=4.5)= -5.63411 # GDT_score(maxd=12,maxw=4.7)= -5.51952 # GDT_score(maxd=14,maxw=5.2)= -5.76405 # GDT_score(maxd=14,maxw=5.5)= -5.59124 # command:# request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_444783193.pdb -s /var/tmp/to_scwrl_444783193.seq -o /var/tmp/from_scwrl_444783193.pdb > /var/tmp/scwrl_444783193.log Error: can't open any of /var/tmp/from_scwrl_444783193.pdb or /var/tmp/from_scwrl_444783193_b.pdb or /var/tmp/from_scwrl_444783193_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.12745 # GDT_score(maxd=8,maxw=2.9)= -5.42325 # GDT_score(maxd=8,maxw=3.2)= -5.2212 # GDT_score(maxd=8,maxw=3.5)= -5.03246 # GDT_score(maxd=10,maxw=3.8)= -5.76502 # GDT_score(maxd=10,maxw=4)= -5.62382 # GDT_score(maxd=10,maxw=4.2)= -5.48441 # GDT_score(maxd=12,maxw=4.3)= -6.2772 # GDT_score(maxd=12,maxw=4.5)= -6.11535 # GDT_score(maxd=12,maxw=4.7)= -5.95586 # GDT_score(maxd=14,maxw=5.2)= -6.31015 # GDT_score(maxd=14,maxw=5.5)= -6.07291 # command:# request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_498091409.pdb -s /var/tmp/to_scwrl_498091409.seq -o /var/tmp/from_scwrl_498091409.pdb > /var/tmp/scwrl_498091409.log Error: can't open any of /var/tmp/from_scwrl_498091409.pdb or /var/tmp/from_scwrl_498091409_b.pdb or /var/tmp/from_scwrl_498091409_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -5.80065 # GDT_score(maxd=8,maxw=2.9)= -5.24439 # GDT_score(maxd=8,maxw=3.2)= -5.12038 # GDT_score(maxd=8,maxw=3.5)= -5.00776 # GDT_score(maxd=10,maxw=3.8)= -5.53193 # GDT_score(maxd=10,maxw=4)= -5.41874 # GDT_score(maxd=10,maxw=4.2)= -5.3033 # GDT_score(maxd=12,maxw=4.3)= -5.82476 # GDT_score(maxd=12,maxw=4.5)= -5.6966 # GDT_score(maxd=12,maxw=4.7)= -5.57934 # GDT_score(maxd=14,maxw=5.2)= -5.79479 # GDT_score(maxd=14,maxw=5.5)= -5.62131 # command:# request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1502390016.pdb -s /var/tmp/to_scwrl_1502390016.seq -o /var/tmp/from_scwrl_1502390016.pdb > /var/tmp/scwrl_1502390016.log Error: can't open any of /var/tmp/from_scwrl_1502390016.pdb or /var/tmp/from_scwrl_1502390016_b.pdb or /var/tmp/from_scwrl_1502390016_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0320.try1-opt2.pdb looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -6.12745 # GDT_score(maxd=8,maxw=2.9)= -5.43089 # GDT_score(maxd=8,maxw=3.2)= -5.22811 # GDT_score(maxd=8,maxw=3.5)= -5.03878 # GDT_score(maxd=10,maxw=3.8)= -5.77288 # GDT_score(maxd=10,maxw=4)= -5.6313 # GDT_score(maxd=10,maxw=4.2)= -5.49156 # GDT_score(maxd=12,maxw=4.3)= -6.28421 # GDT_score(maxd=12,maxw=4.5)= -6.12208 # GDT_score(maxd=12,maxw=4.7)= -5.96237 # GDT_score(maxd=14,maxw=5.2)= -6.31609 # GDT_score(maxd=14,maxw=5.5)= -6.07853 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0320.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.650327 # GDT_score = -5.39216 # GDT_score(maxd=8,maxw=2.9)= -5.05311 # GDT_score(maxd=8,maxw=3.2)= -4.83118 # GDT_score(maxd=8,maxw=3.5)= -4.64117 # GDT_score(maxd=10,maxw=3.8)= -5.27879 # GDT_score(maxd=10,maxw=4)= -5.14557 # GDT_score(maxd=10,maxw=4.2)= -5.0186 # GDT_score(maxd=12,maxw=4.3)= -5.67373 # GDT_score(maxd=12,maxw=4.5)= -5.52906 # GDT_score(maxd=12,maxw=4.7)= -5.38314 # GDT_score(maxd=14,maxw=5.2)= -5.63449 # GDT_score(maxd=14,maxw=5.5)= -5.43172 # command:# ReadConformPDB reading from PDB file T0320.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.715686 # GDT_score = -5.39216 # GDT_score(maxd=8,maxw=2.9)= -4.71548 # GDT_score(maxd=8,maxw=3.2)= -4.54914 # GDT_score(maxd=8,maxw=3.5)= -4.41131 # GDT_score(maxd=10,maxw=3.8)= -5.00269 # GDT_score(maxd=10,maxw=4)= -4.89961 # GDT_score(maxd=10,maxw=4.2)= -4.80636 # GDT_score(maxd=12,maxw=4.3)= -5.35327 # GDT_score(maxd=12,maxw=4.5)= -5.2455 # GDT_score(maxd=12,maxw=4.7)= -5.13248 # GDT_score(maxd=14,maxw=5.2)= -5.38238 # GDT_score(maxd=14,maxw=5.5)= -5.21272 # command:# ReadConformPDB reading from PDB file T0320.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0320.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0320.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 295 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 279 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try12-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 297 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 273 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 267 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try3-opt2.repack-1stdomain.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file T0320.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 261 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0320.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-models.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file chimera-models.try3andtry8.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try3andtry2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file chimera-try3andtry2combined.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try3andtry4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file chimera-try3andtry4combined.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-try3andtry5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # ReadConformPDB reading from PDB file chimera-try3andtry5combined.pdb.gz looking for model 1 # Found a chain break before 294 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_972707035.pdb -s /var/tmp/to_scwrl_972707035.seq -o /var/tmp/from_scwrl_972707035.pdb > /var/tmp/scwrl_972707035.log Error: can't open any of /var/tmp/from_scwrl_972707035.pdb or /var/tmp/from_scwrl_972707035_b.pdb or /var/tmp/from_scwrl_972707035_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_113334899.pdb -s /var/tmp/to_scwrl_113334899.seq -o /var/tmp/from_scwrl_113334899.pdb > /var/tmp/scwrl_113334899.log Error: can't open any of /var/tmp/from_scwrl_113334899.pdb or /var/tmp/from_scwrl_113334899_b.pdb or /var/tmp/from_scwrl_113334899_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1475797939.pdb -s /var/tmp/to_scwrl_1475797939.seq -o /var/tmp/from_scwrl_1475797939.pdb > /var/tmp/scwrl_1475797939.log Error: can't open any of /var/tmp/from_scwrl_1475797939.pdb or /var/tmp/from_scwrl_1475797939_b.pdb or /var/tmp/from_scwrl_1475797939_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1650881551.pdb -s /var/tmp/to_scwrl_1650881551.seq -o /var/tmp/from_scwrl_1650881551.pdb > /var/tmp/scwrl_1650881551.log Error: can't open any of /var/tmp/from_scwrl_1650881551.pdb or /var/tmp/from_scwrl_1650881551_b.pdb or /var/tmp/from_scwrl_1650881551_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1310511354.pdb -s /var/tmp/to_scwrl_1310511354.seq -o /var/tmp/from_scwrl_1310511354.pdb > /var/tmp/scwrl_1310511354.log Error: can't open any of /var/tmp/from_scwrl_1310511354.pdb or /var/tmp/from_scwrl_1310511354_b.pdb or /var/tmp/from_scwrl_1310511354_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1004945846.pdb -s /var/tmp/to_scwrl_1004945846.seq -o /var/tmp/from_scwrl_1004945846.pdb > /var/tmp/scwrl_1004945846.log Error: can't open any of /var/tmp/from_scwrl_1004945846.pdb or /var/tmp/from_scwrl_1004945846_b.pdb or /var/tmp/from_scwrl_1004945846_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_731861437.pdb -s /var/tmp/to_scwrl_731861437.seq -o /var/tmp/from_scwrl_731861437.pdb > /var/tmp/scwrl_731861437.log Error: can't open any of /var/tmp/from_scwrl_731861437.pdb or /var/tmp/from_scwrl_731861437_b.pdb or /var/tmp/from_scwrl_731861437_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1968224316.pdb -s /var/tmp/to_scwrl_1968224316.seq -o /var/tmp/from_scwrl_1968224316.pdb > /var/tmp/scwrl_1968224316.log Error: can't open any of /var/tmp/from_scwrl_1968224316.pdb or /var/tmp/from_scwrl_1968224316_b.pdb or /var/tmp/from_scwrl_1968224316_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1969307998.pdb -s /var/tmp/to_scwrl_1969307998.seq -o /var/tmp/from_scwrl_1969307998.pdb > /var/tmp/scwrl_1969307998.log Error: can't open any of /var/tmp/from_scwrl_1969307998.pdb or /var/tmp/from_scwrl_1969307998_b.pdb or /var/tmp/from_scwrl_1969307998_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2118472698.pdb -s /var/tmp/to_scwrl_2118472698.seq -o /var/tmp/from_scwrl_2118472698.pdb > /var/tmp/scwrl_2118472698.log Error: can't open any of /var/tmp/from_scwrl_2118472698.pdb or /var/tmp/from_scwrl_2118472698_b.pdb or /var/tmp/from_scwrl_2118472698_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_547418237.pdb -s /var/tmp/to_scwrl_547418237.seq -o /var/tmp/from_scwrl_547418237.pdb > /var/tmp/scwrl_547418237.log Error: can't open any of /var/tmp/from_scwrl_547418237.pdb or /var/tmp/from_scwrl_547418237_b.pdb or /var/tmp/from_scwrl_547418237_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_688956551.pdb -s /var/tmp/to_scwrl_688956551.seq -o /var/tmp/from_scwrl_688956551.pdb > /var/tmp/scwrl_688956551.log Error: can't open any of /var/tmp/from_scwrl_688956551.pdb or /var/tmp/from_scwrl_688956551_b.pdb or /var/tmp/from_scwrl_688956551_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_366054132.pdb -s /var/tmp/to_scwrl_366054132.seq -o /var/tmp/from_scwrl_366054132.pdb > /var/tmp/scwrl_366054132.log Error: can't open any of /var/tmp/from_scwrl_366054132.pdb or /var/tmp/from_scwrl_366054132_b.pdb or /var/tmp/from_scwrl_366054132_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_808804619.pdb -s /var/tmp/to_scwrl_808804619.seq -o /var/tmp/from_scwrl_808804619.pdb > /var/tmp/scwrl_808804619.log Error: can't open any of /var/tmp/from_scwrl_808804619.pdb or /var/tmp/from_scwrl_808804619_b.pdb or /var/tmp/from_scwrl_808804619_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 278 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2039678250.pdb -s /var/tmp/to_scwrl_2039678250.seq -o /var/tmp/from_scwrl_2039678250.pdb > /var/tmp/scwrl_2039678250.log Error: can't open any of /var/tmp/from_scwrl_2039678250.pdb or /var/tmp/from_scwrl_2039678250_b.pdb or /var/tmp/from_scwrl_2039678250_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 232 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1833041282.pdb -s /var/tmp/to_scwrl_1833041282.seq -o /var/tmp/from_scwrl_1833041282.pdb > /var/tmp/scwrl_1833041282.log Error: can't open any of /var/tmp/from_scwrl_1833041282.pdb or /var/tmp/from_scwrl_1833041282_b.pdb or /var/tmp/from_scwrl_1833041282_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_184567040.pdb -s /var/tmp/to_scwrl_184567040.seq -o /var/tmp/from_scwrl_184567040.pdb > /var/tmp/scwrl_184567040.log Error: can't open any of /var/tmp/from_scwrl_184567040.pdb or /var/tmp/from_scwrl_184567040_b.pdb or /var/tmp/from_scwrl_184567040_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1901072067.pdb -s /var/tmp/to_scwrl_1901072067.seq -o /var/tmp/from_scwrl_1901072067.pdb > /var/tmp/scwrl_1901072067.log Error: can't open any of /var/tmp/from_scwrl_1901072067.pdb or /var/tmp/from_scwrl_1901072067_b.pdb or /var/tmp/from_scwrl_1901072067_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1702133006.pdb -s /var/tmp/to_scwrl_1702133006.seq -o /var/tmp/from_scwrl_1702133006.pdb > /var/tmp/scwrl_1702133006.log Error: can't open any of /var/tmp/from_scwrl_1702133006.pdb or /var/tmp/from_scwrl_1702133006_b.pdb or /var/tmp/from_scwrl_1702133006_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_838356729.pdb -s /var/tmp/to_scwrl_838356729.seq -o /var/tmp/from_scwrl_838356729.pdb > /var/tmp/scwrl_838356729.log Error: can't open any of /var/tmp/from_scwrl_838356729.pdb or /var/tmp/from_scwrl_838356729_b.pdb or /var/tmp/from_scwrl_838356729_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1624426647.pdb -s /var/tmp/to_scwrl_1624426647.seq -o /var/tmp/from_scwrl_1624426647.pdb > /var/tmp/scwrl_1624426647.log Error: can't open any of /var/tmp/from_scwrl_1624426647.pdb or /var/tmp/from_scwrl_1624426647_b.pdb or /var/tmp/from_scwrl_1624426647_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 292 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1961306673.pdb -s /var/tmp/to_scwrl_1961306673.seq -o /var/tmp/from_scwrl_1961306673.pdb > /var/tmp/scwrl_1961306673.log Error: can't open any of /var/tmp/from_scwrl_1961306673.pdb or /var/tmp/from_scwrl_1961306673_b.pdb or /var/tmp/from_scwrl_1961306673_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_374691923.pdb -s /var/tmp/to_scwrl_374691923.seq -o /var/tmp/from_scwrl_374691923.pdb > /var/tmp/scwrl_374691923.log Error: can't open any of /var/tmp/from_scwrl_374691923.pdb or /var/tmp/from_scwrl_374691923_b.pdb or /var/tmp/from_scwrl_374691923_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1181210650.pdb -s /var/tmp/to_scwrl_1181210650.seq -o /var/tmp/from_scwrl_1181210650.pdb > /var/tmp/scwrl_1181210650.log Error: can't open any of /var/tmp/from_scwrl_1181210650.pdb or /var/tmp/from_scwrl_1181210650_b.pdb or /var/tmp/from_scwrl_1181210650_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_546076207.pdb -s /var/tmp/to_scwrl_546076207.seq -o /var/tmp/from_scwrl_546076207.pdb > /var/tmp/scwrl_546076207.log Error: can't open any of /var/tmp/from_scwrl_546076207.pdb or /var/tmp/from_scwrl_546076207_b.pdb or /var/tmp/from_scwrl_546076207_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2093306598.pdb -s /var/tmp/to_scwrl_2093306598.seq -o /var/tmp/from_scwrl_2093306598.pdb > /var/tmp/scwrl_2093306598.log Error: can't open any of /var/tmp/from_scwrl_2093306598.pdb or /var/tmp/from_scwrl_2093306598_b.pdb or /var/tmp/from_scwrl_2093306598_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1578528594.pdb -s /var/tmp/to_scwrl_1578528594.seq -o /var/tmp/from_scwrl_1578528594.pdb > /var/tmp/scwrl_1578528594.log Error: can't open any of /var/tmp/from_scwrl_1578528594.pdb or /var/tmp/from_scwrl_1578528594_b.pdb or /var/tmp/from_scwrl_1578528594_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_789555714.pdb -s /var/tmp/to_scwrl_789555714.seq -o /var/tmp/from_scwrl_789555714.pdb > /var/tmp/scwrl_789555714.log Error: can't open any of /var/tmp/from_scwrl_789555714.pdb or /var/tmp/from_scwrl_789555714_b.pdb or /var/tmp/from_scwrl_789555714_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_390606144.pdb -s /var/tmp/to_scwrl_390606144.seq -o /var/tmp/from_scwrl_390606144.pdb > /var/tmp/scwrl_390606144.log Error: can't open any of /var/tmp/from_scwrl_390606144.pdb or /var/tmp/from_scwrl_390606144_b.pdb or /var/tmp/from_scwrl_390606144_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2076620003.pdb -s /var/tmp/to_scwrl_2076620003.seq -o /var/tmp/from_scwrl_2076620003.pdb > /var/tmp/scwrl_2076620003.log Error: can't open any of /var/tmp/from_scwrl_2076620003.pdb or /var/tmp/from_scwrl_2076620003_b.pdb or /var/tmp/from_scwrl_2076620003_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_144462083.pdb -s /var/tmp/to_scwrl_144462083.seq -o /var/tmp/from_scwrl_144462083.pdb > /var/tmp/scwrl_144462083.log Error: can't open any of /var/tmp/from_scwrl_144462083.pdb or /var/tmp/from_scwrl_144462083_b.pdb or /var/tmp/from_scwrl_144462083_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1363313178.pdb -s /var/tmp/to_scwrl_1363313178.seq -o /var/tmp/from_scwrl_1363313178.pdb > /var/tmp/scwrl_1363313178.log Error: can't open any of /var/tmp/from_scwrl_1363313178.pdb or /var/tmp/from_scwrl_1363313178_b.pdb or /var/tmp/from_scwrl_1363313178_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_42471256.pdb -s /var/tmp/to_scwrl_42471256.seq -o /var/tmp/from_scwrl_42471256.pdb > /var/tmp/scwrl_42471256.log Error: can't open any of /var/tmp/from_scwrl_42471256.pdb or /var/tmp/from_scwrl_42471256_b.pdb or /var/tmp/from_scwrl_42471256_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1620260022.pdb -s /var/tmp/to_scwrl_1620260022.seq -o /var/tmp/from_scwrl_1620260022.pdb > /var/tmp/scwrl_1620260022.log Error: can't open any of /var/tmp/from_scwrl_1620260022.pdb or /var/tmp/from_scwrl_1620260022_b.pdb or /var/tmp/from_scwrl_1620260022_a.pdb Error: no new SCWRL conformation added # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_866711084.pdb -s /var/tmp/to_scwrl_866711084.seq -o /var/tmp/from_scwrl_866711084.pdb > /var/tmp/scwrl_866711084.log Error: can't open any of /var/tmp/from_scwrl_866711084.pdb or /var/tmp/from_scwrl_866711084_b.pdb or /var/tmp/from_scwrl_866711084_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1352982610.pdb -s /var/tmp/to_scwrl_1352982610.seq -o /var/tmp/from_scwrl_1352982610.pdb > /var/tmp/scwrl_1352982610.log Error: can't open any of /var/tmp/from_scwrl_1352982610.pdb or /var/tmp/from_scwrl_1352982610_b.pdb or /var/tmp/from_scwrl_1352982610_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_477722222.pdb -s /var/tmp/to_scwrl_477722222.seq -o /var/tmp/from_scwrl_477722222.pdb > /var/tmp/scwrl_477722222.log Error: can't open any of /var/tmp/from_scwrl_477722222.pdb or /var/tmp/from_scwrl_477722222_b.pdb or /var/tmp/from_scwrl_477722222_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1598572520.pdb -s /var/tmp/to_scwrl_1598572520.seq -o /var/tmp/from_scwrl_1598572520.pdb > /var/tmp/scwrl_1598572520.log Error: can't open any of /var/tmp/from_scwrl_1598572520.pdb or /var/tmp/from_scwrl_1598572520_b.pdb or /var/tmp/from_scwrl_1598572520_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1173723279.pdb -s /var/tmp/to_scwrl_1173723279.seq -o /var/tmp/from_scwrl_1173723279.pdb > /var/tmp/scwrl_1173723279.log Error: can't open any of /var/tmp/from_scwrl_1173723279.pdb or /var/tmp/from_scwrl_1173723279_b.pdb or /var/tmp/from_scwrl_1173723279_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_299546573.pdb -s /var/tmp/to_scwrl_299546573.seq -o /var/tmp/from_scwrl_299546573.pdb > /var/tmp/scwrl_299546573.log Error: can't open any of /var/tmp/from_scwrl_299546573.pdb or /var/tmp/from_scwrl_299546573_b.pdb or /var/tmp/from_scwrl_299546573_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1569561572.pdb -s /var/tmp/to_scwrl_1569561572.seq -o /var/tmp/from_scwrl_1569561572.pdb > /var/tmp/scwrl_1569561572.log Error: can't open any of /var/tmp/from_scwrl_1569561572.pdb or /var/tmp/from_scwrl_1569561572_b.pdb or /var/tmp/from_scwrl_1569561572_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1721141517.pdb -s /var/tmp/to_scwrl_1721141517.seq -o /var/tmp/from_scwrl_1721141517.pdb > /var/tmp/scwrl_1721141517.log Error: can't open any of /var/tmp/from_scwrl_1721141517.pdb or /var/tmp/from_scwrl_1721141517_b.pdb or /var/tmp/from_scwrl_1721141517_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_988503124.pdb -s /var/tmp/to_scwrl_988503124.seq -o /var/tmp/from_scwrl_988503124.pdb > /var/tmp/scwrl_988503124.log Error: can't open any of /var/tmp/from_scwrl_988503124.pdb or /var/tmp/from_scwrl_988503124_b.pdb or /var/tmp/from_scwrl_988503124_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1935615704.pdb -s /var/tmp/to_scwrl_1935615704.seq -o /var/tmp/from_scwrl_1935615704.pdb > /var/tmp/scwrl_1935615704.log Error: can't open any of /var/tmp/from_scwrl_1935615704.pdb or /var/tmp/from_scwrl_1935615704_b.pdb or /var/tmp/from_scwrl_1935615704_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_382462489.pdb -s /var/tmp/to_scwrl_382462489.seq -o /var/tmp/from_scwrl_382462489.pdb > /var/tmp/scwrl_382462489.log Error: can't open any of /var/tmp/from_scwrl_382462489.pdb or /var/tmp/from_scwrl_382462489_b.pdb or /var/tmp/from_scwrl_382462489_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_880697727.pdb -s /var/tmp/to_scwrl_880697727.seq -o /var/tmp/from_scwrl_880697727.pdb > /var/tmp/scwrl_880697727.log Error: can't open any of /var/tmp/from_scwrl_880697727.pdb or /var/tmp/from_scwrl_880697727_b.pdb or /var/tmp/from_scwrl_880697727_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1621173339.pdb -s /var/tmp/to_scwrl_1621173339.seq -o /var/tmp/from_scwrl_1621173339.pdb > /var/tmp/scwrl_1621173339.log Error: can't open any of /var/tmp/from_scwrl_1621173339.pdb or /var/tmp/from_scwrl_1621173339_b.pdb or /var/tmp/from_scwrl_1621173339_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_567029529.pdb -s /var/tmp/to_scwrl_567029529.seq -o /var/tmp/from_scwrl_567029529.pdb > /var/tmp/scwrl_567029529.log Error: can't open any of /var/tmp/from_scwrl_567029529.pdb or /var/tmp/from_scwrl_567029529_b.pdb or /var/tmp/from_scwrl_567029529_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_634286147.pdb -s /var/tmp/to_scwrl_634286147.seq -o /var/tmp/from_scwrl_634286147.pdb > /var/tmp/scwrl_634286147.log Error: can't open any of /var/tmp/from_scwrl_634286147.pdb or /var/tmp/from_scwrl_634286147_b.pdb or /var/tmp/from_scwrl_634286147_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1175822698.pdb -s /var/tmp/to_scwrl_1175822698.seq -o /var/tmp/from_scwrl_1175822698.pdb > /var/tmp/scwrl_1175822698.log Error: can't open any of /var/tmp/from_scwrl_1175822698.pdb or /var/tmp/from_scwrl_1175822698_b.pdb or /var/tmp/from_scwrl_1175822698_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1405386257.pdb -s /var/tmp/to_scwrl_1405386257.seq -o /var/tmp/from_scwrl_1405386257.pdb > /var/tmp/scwrl_1405386257.log Error: can't open any of /var/tmp/from_scwrl_1405386257.pdb or /var/tmp/from_scwrl_1405386257_b.pdb or /var/tmp/from_scwrl_1405386257_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_111229147.pdb -s /var/tmp/to_scwrl_111229147.seq -o /var/tmp/from_scwrl_111229147.pdb > /var/tmp/scwrl_111229147.log Error: can't open any of /var/tmp/from_scwrl_111229147.pdb or /var/tmp/from_scwrl_111229147_b.pdb or /var/tmp/from_scwrl_111229147_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_989645726.pdb -s /var/tmp/to_scwrl_989645726.seq -o /var/tmp/from_scwrl_989645726.pdb > /var/tmp/scwrl_989645726.log Error: can't open any of /var/tmp/from_scwrl_989645726.pdb or /var/tmp/from_scwrl_989645726_b.pdb or /var/tmp/from_scwrl_989645726_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1780078181.pdb -s /var/tmp/to_scwrl_1780078181.seq -o /var/tmp/from_scwrl_1780078181.pdb > /var/tmp/scwrl_1780078181.log Error: can't open any of /var/tmp/from_scwrl_1780078181.pdb or /var/tmp/from_scwrl_1780078181_b.pdb or /var/tmp/from_scwrl_1780078181_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1292439798.pdb -s /var/tmp/to_scwrl_1292439798.seq -o /var/tmp/from_scwrl_1292439798.pdb > /var/tmp/scwrl_1292439798.log Error: can't open any of /var/tmp/from_scwrl_1292439798.pdb or /var/tmp/from_scwrl_1292439798_b.pdb or /var/tmp/from_scwrl_1292439798_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 214 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1535721932.pdb -s /var/tmp/to_scwrl_1535721932.seq -o /var/tmp/from_scwrl_1535721932.pdb > /var/tmp/scwrl_1535721932.log Error: can't open any of /var/tmp/from_scwrl_1535721932.pdb or /var/tmp/from_scwrl_1535721932_b.pdb or /var/tmp/from_scwrl_1535721932_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1725901132.pdb -s /var/tmp/to_scwrl_1725901132.seq -o /var/tmp/from_scwrl_1725901132.pdb > /var/tmp/scwrl_1725901132.log Error: can't open any of /var/tmp/from_scwrl_1725901132.pdb or /var/tmp/from_scwrl_1725901132_b.pdb or /var/tmp/from_scwrl_1725901132_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_723484746.pdb -s /var/tmp/to_scwrl_723484746.seq -o /var/tmp/from_scwrl_723484746.pdb > /var/tmp/scwrl_723484746.log Error: can't open any of /var/tmp/from_scwrl_723484746.pdb or /var/tmp/from_scwrl_723484746_b.pdb or /var/tmp/from_scwrl_723484746_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_177794000.pdb -s /var/tmp/to_scwrl_177794000.seq -o /var/tmp/from_scwrl_177794000.pdb > /var/tmp/scwrl_177794000.log Error: can't open any of /var/tmp/from_scwrl_177794000.pdb or /var/tmp/from_scwrl_177794000_b.pdb or /var/tmp/from_scwrl_177794000_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2116507276.pdb -s /var/tmp/to_scwrl_2116507276.seq -o /var/tmp/from_scwrl_2116507276.pdb > /var/tmp/scwrl_2116507276.log Error: can't open any of /var/tmp/from_scwrl_2116507276.pdb or /var/tmp/from_scwrl_2116507276_b.pdb or /var/tmp/from_scwrl_2116507276_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_652621102.pdb -s /var/tmp/to_scwrl_652621102.seq -o /var/tmp/from_scwrl_652621102.pdb > /var/tmp/scwrl_652621102.log Error: can't open any of /var/tmp/from_scwrl_652621102.pdb or /var/tmp/from_scwrl_652621102_b.pdb or /var/tmp/from_scwrl_652621102_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_322256083.pdb -s /var/tmp/to_scwrl_322256083.seq -o /var/tmp/from_scwrl_322256083.pdb > /var/tmp/scwrl_322256083.log Error: can't open any of /var/tmp/from_scwrl_322256083.pdb or /var/tmp/from_scwrl_322256083_b.pdb or /var/tmp/from_scwrl_322256083_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1332336807.pdb -s /var/tmp/to_scwrl_1332336807.seq -o /var/tmp/from_scwrl_1332336807.pdb > /var/tmp/scwrl_1332336807.log Error: can't open any of /var/tmp/from_scwrl_1332336807.pdb or /var/tmp/from_scwrl_1332336807_b.pdb or /var/tmp/from_scwrl_1332336807_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_695092358.pdb -s /var/tmp/to_scwrl_695092358.seq -o /var/tmp/from_scwrl_695092358.pdb > /var/tmp/scwrl_695092358.log Error: can't open any of /var/tmp/from_scwrl_695092358.pdb or /var/tmp/from_scwrl_695092358_b.pdb or /var/tmp/from_scwrl_695092358_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1942516106.pdb -s /var/tmp/to_scwrl_1942516106.seq -o /var/tmp/from_scwrl_1942516106.pdb > /var/tmp/scwrl_1942516106.log Error: can't open any of /var/tmp/from_scwrl_1942516106.pdb or /var/tmp/from_scwrl_1942516106_b.pdb or /var/tmp/from_scwrl_1942516106_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_51564244.pdb -s /var/tmp/to_scwrl_51564244.seq -o /var/tmp/from_scwrl_51564244.pdb > /var/tmp/scwrl_51564244.log Error: can't open any of /var/tmp/from_scwrl_51564244.pdb or /var/tmp/from_scwrl_51564244_b.pdb or /var/tmp/from_scwrl_51564244_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2048074969.pdb -s /var/tmp/to_scwrl_2048074969.seq -o /var/tmp/from_scwrl_2048074969.pdb > /var/tmp/scwrl_2048074969.log Error: can't open any of /var/tmp/from_scwrl_2048074969.pdb or /var/tmp/from_scwrl_2048074969_b.pdb or /var/tmp/from_scwrl_2048074969_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_272754681.pdb -s /var/tmp/to_scwrl_272754681.seq -o /var/tmp/from_scwrl_272754681.pdb > /var/tmp/scwrl_272754681.log Error: can't open any of /var/tmp/from_scwrl_272754681.pdb or /var/tmp/from_scwrl_272754681_b.pdb or /var/tmp/from_scwrl_272754681_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1650136765.pdb -s /var/tmp/to_scwrl_1650136765.seq -o /var/tmp/from_scwrl_1650136765.pdb > /var/tmp/scwrl_1650136765.log Error: can't open any of /var/tmp/from_scwrl_1650136765.pdb or /var/tmp/from_scwrl_1650136765_b.pdb or /var/tmp/from_scwrl_1650136765_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1074314601.pdb -s /var/tmp/to_scwrl_1074314601.seq -o /var/tmp/from_scwrl_1074314601.pdb > /var/tmp/scwrl_1074314601.log Error: can't open any of /var/tmp/from_scwrl_1074314601.pdb or /var/tmp/from_scwrl_1074314601_b.pdb or /var/tmp/from_scwrl_1074314601_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_572301254.pdb -s /var/tmp/to_scwrl_572301254.seq -o /var/tmp/from_scwrl_572301254.pdb > /var/tmp/scwrl_572301254.log Error: can't open any of /var/tmp/from_scwrl_572301254.pdb or /var/tmp/from_scwrl_572301254_b.pdb or /var/tmp/from_scwrl_572301254_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1072214691.pdb -s /var/tmp/to_scwrl_1072214691.seq -o /var/tmp/from_scwrl_1072214691.pdb > /var/tmp/scwrl_1072214691.log Error: can't open any of /var/tmp/from_scwrl_1072214691.pdb or /var/tmp/from_scwrl_1072214691_b.pdb or /var/tmp/from_scwrl_1072214691_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_647972472.pdb -s /var/tmp/to_scwrl_647972472.seq -o /var/tmp/from_scwrl_647972472.pdb > /var/tmp/scwrl_647972472.log Error: can't open any of /var/tmp/from_scwrl_647972472.pdb or /var/tmp/from_scwrl_647972472_b.pdb or /var/tmp/from_scwrl_647972472_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1560804377.pdb -s /var/tmp/to_scwrl_1560804377.seq -o /var/tmp/from_scwrl_1560804377.pdb > /var/tmp/scwrl_1560804377.log Error: can't open any of /var/tmp/from_scwrl_1560804377.pdb or /var/tmp/from_scwrl_1560804377_b.pdb or /var/tmp/from_scwrl_1560804377_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_860346748.pdb -s /var/tmp/to_scwrl_860346748.seq -o /var/tmp/from_scwrl_860346748.pdb > /var/tmp/scwrl_860346748.log Error: can't open any of /var/tmp/from_scwrl_860346748.pdb or /var/tmp/from_scwrl_860346748_b.pdb or /var/tmp/from_scwrl_860346748_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1030434962.pdb -s /var/tmp/to_scwrl_1030434962.seq -o /var/tmp/from_scwrl_1030434962.pdb > /var/tmp/scwrl_1030434962.log Error: can't open any of /var/tmp/from_scwrl_1030434962.pdb or /var/tmp/from_scwrl_1030434962_b.pdb or /var/tmp/from_scwrl_1030434962_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_294018457.pdb -s /var/tmp/to_scwrl_294018457.seq -o /var/tmp/from_scwrl_294018457.pdb > /var/tmp/scwrl_294018457.log Error: can't open any of /var/tmp/from_scwrl_294018457.pdb or /var/tmp/from_scwrl_294018457_b.pdb or /var/tmp/from_scwrl_294018457_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_334036440.pdb -s /var/tmp/to_scwrl_334036440.seq -o /var/tmp/from_scwrl_334036440.pdb > /var/tmp/scwrl_334036440.log Error: can't open any of /var/tmp/from_scwrl_334036440.pdb or /var/tmp/from_scwrl_334036440_b.pdb or /var/tmp/from_scwrl_334036440_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1597464490.pdb -s /var/tmp/to_scwrl_1597464490.seq -o /var/tmp/from_scwrl_1597464490.pdb > /var/tmp/scwrl_1597464490.log Error: can't open any of /var/tmp/from_scwrl_1597464490.pdb or /var/tmp/from_scwrl_1597464490_b.pdb or /var/tmp/from_scwrl_1597464490_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_928304605.pdb -s /var/tmp/to_scwrl_928304605.seq -o /var/tmp/from_scwrl_928304605.pdb > /var/tmp/scwrl_928304605.log Error: can't open any of /var/tmp/from_scwrl_928304605.pdb or /var/tmp/from_scwrl_928304605_b.pdb or /var/tmp/from_scwrl_928304605_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1509859139.pdb -s /var/tmp/to_scwrl_1509859139.seq -o /var/tmp/from_scwrl_1509859139.pdb > /var/tmp/scwrl_1509859139.log Error: can't open any of /var/tmp/from_scwrl_1509859139.pdb or /var/tmp/from_scwrl_1509859139_b.pdb or /var/tmp/from_scwrl_1509859139_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_855367102.pdb -s /var/tmp/to_scwrl_855367102.seq -o /var/tmp/from_scwrl_855367102.pdb > /var/tmp/scwrl_855367102.log Error: can't open any of /var/tmp/from_scwrl_855367102.pdb or /var/tmp/from_scwrl_855367102_b.pdb or /var/tmp/from_scwrl_855367102_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1039533752.pdb -s /var/tmp/to_scwrl_1039533752.seq -o /var/tmp/from_scwrl_1039533752.pdb > /var/tmp/scwrl_1039533752.log Error: can't open any of /var/tmp/from_scwrl_1039533752.pdb or /var/tmp/from_scwrl_1039533752_b.pdb or /var/tmp/from_scwrl_1039533752_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_352021218.pdb -s /var/tmp/to_scwrl_352021218.seq -o /var/tmp/from_scwrl_352021218.pdb > /var/tmp/scwrl_352021218.log Error: can't open any of /var/tmp/from_scwrl_352021218.pdb or /var/tmp/from_scwrl_352021218_b.pdb or /var/tmp/from_scwrl_352021218_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_487961636.pdb -s /var/tmp/to_scwrl_487961636.seq -o /var/tmp/from_scwrl_487961636.pdb > /var/tmp/scwrl_487961636.log Error: can't open any of /var/tmp/from_scwrl_487961636.pdb or /var/tmp/from_scwrl_487961636_b.pdb or /var/tmp/from_scwrl_487961636_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_184489903.pdb -s /var/tmp/to_scwrl_184489903.seq -o /var/tmp/from_scwrl_184489903.pdb > /var/tmp/scwrl_184489903.log Error: can't open any of /var/tmp/from_scwrl_184489903.pdb or /var/tmp/from_scwrl_184489903_b.pdb or /var/tmp/from_scwrl_184489903_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1887743150.pdb -s /var/tmp/to_scwrl_1887743150.seq -o /var/tmp/from_scwrl_1887743150.pdb > /var/tmp/scwrl_1887743150.log Error: can't open any of /var/tmp/from_scwrl_1887743150.pdb or /var/tmp/from_scwrl_1887743150_b.pdb or /var/tmp/from_scwrl_1887743150_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_66379121.pdb -s /var/tmp/to_scwrl_66379121.seq -o /var/tmp/from_scwrl_66379121.pdb > /var/tmp/scwrl_66379121.log Error: can't open any of /var/tmp/from_scwrl_66379121.pdb or /var/tmp/from_scwrl_66379121_b.pdb or /var/tmp/from_scwrl_66379121_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 298 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_907974649.pdb -s /var/tmp/to_scwrl_907974649.seq -o /var/tmp/from_scwrl_907974649.pdb > /var/tmp/scwrl_907974649.log Error: can't open any of /var/tmp/from_scwrl_907974649.pdb or /var/tmp/from_scwrl_907974649_b.pdb or /var/tmp/from_scwrl_907974649_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2065537150.pdb -s /var/tmp/to_scwrl_2065537150.seq -o /var/tmp/from_scwrl_2065537150.pdb > /var/tmp/scwrl_2065537150.log Error: can't open any of /var/tmp/from_scwrl_2065537150.pdb or /var/tmp/from_scwrl_2065537150_b.pdb or /var/tmp/from_scwrl_2065537150_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_35402750.pdb -s /var/tmp/to_scwrl_35402750.seq -o /var/tmp/from_scwrl_35402750.pdb > /var/tmp/scwrl_35402750.log Error: can't open any of /var/tmp/from_scwrl_35402750.pdb or /var/tmp/from_scwrl_35402750_b.pdb or /var/tmp/from_scwrl_35402750_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1560595751.pdb -s /var/tmp/to_scwrl_1560595751.seq -o /var/tmp/from_scwrl_1560595751.pdb > /var/tmp/scwrl_1560595751.log Error: can't open any of /var/tmp/from_scwrl_1560595751.pdb or /var/tmp/from_scwrl_1560595751_b.pdb or /var/tmp/from_scwrl_1560595751_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_240309587.pdb -s /var/tmp/to_scwrl_240309587.seq -o /var/tmp/from_scwrl_240309587.pdb > /var/tmp/scwrl_240309587.log Error: can't open any of /var/tmp/from_scwrl_240309587.pdb or /var/tmp/from_scwrl_240309587_b.pdb or /var/tmp/from_scwrl_240309587_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1367739557.pdb -s /var/tmp/to_scwrl_1367739557.seq -o /var/tmp/from_scwrl_1367739557.pdb > /var/tmp/scwrl_1367739557.log Error: can't open any of /var/tmp/from_scwrl_1367739557.pdb or /var/tmp/from_scwrl_1367739557_b.pdb or /var/tmp/from_scwrl_1367739557_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_108204462.pdb -s /var/tmp/to_scwrl_108204462.seq -o /var/tmp/from_scwrl_108204462.pdb > /var/tmp/scwrl_108204462.log Error: can't open any of /var/tmp/from_scwrl_108204462.pdb or /var/tmp/from_scwrl_108204462_b.pdb or /var/tmp/from_scwrl_108204462_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_35342046.pdb -s /var/tmp/to_scwrl_35342046.seq -o /var/tmp/from_scwrl_35342046.pdb > /var/tmp/scwrl_35342046.log Error: can't open any of /var/tmp/from_scwrl_35342046.pdb or /var/tmp/from_scwrl_35342046_b.pdb or /var/tmp/from_scwrl_35342046_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1419303802.pdb -s /var/tmp/to_scwrl_1419303802.seq -o /var/tmp/from_scwrl_1419303802.pdb > /var/tmp/scwrl_1419303802.log Error: can't open any of /var/tmp/from_scwrl_1419303802.pdb or /var/tmp/from_scwrl_1419303802_b.pdb or /var/tmp/from_scwrl_1419303802_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_8795784.pdb -s /var/tmp/to_scwrl_8795784.seq -o /var/tmp/from_scwrl_8795784.pdb > /var/tmp/scwrl_8795784.log Error: can't open any of /var/tmp/from_scwrl_8795784.pdb or /var/tmp/from_scwrl_8795784_b.pdb or /var/tmp/from_scwrl_8795784_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_308096727.pdb -s /var/tmp/to_scwrl_308096727.seq -o /var/tmp/from_scwrl_308096727.pdb > /var/tmp/scwrl_308096727.log Error: can't open any of /var/tmp/from_scwrl_308096727.pdb or /var/tmp/from_scwrl_308096727_b.pdb or /var/tmp/from_scwrl_308096727_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_921956921.pdb -s /var/tmp/to_scwrl_921956921.seq -o /var/tmp/from_scwrl_921956921.pdb > /var/tmp/scwrl_921956921.log Error: can't open any of /var/tmp/from_scwrl_921956921.pdb or /var/tmp/from_scwrl_921956921_b.pdb or /var/tmp/from_scwrl_921956921_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1083110386.pdb -s /var/tmp/to_scwrl_1083110386.seq -o /var/tmp/from_scwrl_1083110386.pdb > /var/tmp/scwrl_1083110386.log Error: can't open any of /var/tmp/from_scwrl_1083110386.pdb or /var/tmp/from_scwrl_1083110386_b.pdb or /var/tmp/from_scwrl_1083110386_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_880397981.pdb -s /var/tmp/to_scwrl_880397981.seq -o /var/tmp/from_scwrl_880397981.pdb > /var/tmp/scwrl_880397981.log Error: can't open any of /var/tmp/from_scwrl_880397981.pdb or /var/tmp/from_scwrl_880397981_b.pdb or /var/tmp/from_scwrl_880397981_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1994171611.pdb -s /var/tmp/to_scwrl_1994171611.seq -o /var/tmp/from_scwrl_1994171611.pdb > /var/tmp/scwrl_1994171611.log Error: can't open any of /var/tmp/from_scwrl_1994171611.pdb or /var/tmp/from_scwrl_1994171611_b.pdb or /var/tmp/from_scwrl_1994171611_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1731082858.pdb -s /var/tmp/to_scwrl_1731082858.seq -o /var/tmp/from_scwrl_1731082858.pdb > /var/tmp/scwrl_1731082858.log Error: can't open any of /var/tmp/from_scwrl_1731082858.pdb or /var/tmp/from_scwrl_1731082858_b.pdb or /var/tmp/from_scwrl_1731082858_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_293718711.pdb -s /var/tmp/to_scwrl_293718711.seq -o /var/tmp/from_scwrl_293718711.pdb > /var/tmp/scwrl_293718711.log Error: can't open any of /var/tmp/from_scwrl_293718711.pdb or /var/tmp/from_scwrl_293718711_b.pdb or /var/tmp/from_scwrl_293718711_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_707034712.pdb -s /var/tmp/to_scwrl_707034712.seq -o /var/tmp/from_scwrl_707034712.pdb > /var/tmp/scwrl_707034712.log Error: can't open any of /var/tmp/from_scwrl_707034712.pdb or /var/tmp/from_scwrl_707034712_b.pdb or /var/tmp/from_scwrl_707034712_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_614034173.pdb -s /var/tmp/to_scwrl_614034173.seq -o /var/tmp/from_scwrl_614034173.pdb > /var/tmp/scwrl_614034173.log Error: can't open any of /var/tmp/from_scwrl_614034173.pdb or /var/tmp/from_scwrl_614034173_b.pdb or /var/tmp/from_scwrl_614034173_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_587737168.pdb -s /var/tmp/to_scwrl_587737168.seq -o /var/tmp/from_scwrl_587737168.pdb > /var/tmp/scwrl_587737168.log Error: can't open any of /var/tmp/from_scwrl_587737168.pdb or /var/tmp/from_scwrl_587737168_b.pdb or /var/tmp/from_scwrl_587737168_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1041071152.pdb -s /var/tmp/to_scwrl_1041071152.seq -o /var/tmp/from_scwrl_1041071152.pdb > /var/tmp/scwrl_1041071152.log Error: can't open any of /var/tmp/from_scwrl_1041071152.pdb or /var/tmp/from_scwrl_1041071152_b.pdb or /var/tmp/from_scwrl_1041071152_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_64015017.pdb -s /var/tmp/to_scwrl_64015017.seq -o /var/tmp/from_scwrl_64015017.pdb > /var/tmp/scwrl_64015017.log Error: can't open any of /var/tmp/from_scwrl_64015017.pdb or /var/tmp/from_scwrl_64015017_b.pdb or /var/tmp/from_scwrl_64015017_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 282 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1516041772.pdb -s /var/tmp/to_scwrl_1516041772.seq -o /var/tmp/from_scwrl_1516041772.pdb > /var/tmp/scwrl_1516041772.log Error: can't open any of /var/tmp/from_scwrl_1516041772.pdb or /var/tmp/from_scwrl_1516041772_b.pdb or /var/tmp/from_scwrl_1516041772_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_403446644.pdb -s /var/tmp/to_scwrl_403446644.seq -o /var/tmp/from_scwrl_403446644.pdb > /var/tmp/scwrl_403446644.log Error: can't open any of /var/tmp/from_scwrl_403446644.pdb or /var/tmp/from_scwrl_403446644_b.pdb or /var/tmp/from_scwrl_403446644_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_919382119.pdb -s /var/tmp/to_scwrl_919382119.seq -o /var/tmp/from_scwrl_919382119.pdb > /var/tmp/scwrl_919382119.log Error: can't open any of /var/tmp/from_scwrl_919382119.pdb or /var/tmp/from_scwrl_919382119_b.pdb or /var/tmp/from_scwrl_919382119_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_408091878.pdb -s /var/tmp/to_scwrl_408091878.seq -o /var/tmp/from_scwrl_408091878.pdb > /var/tmp/scwrl_408091878.log Error: can't open any of /var/tmp/from_scwrl_408091878.pdb or /var/tmp/from_scwrl_408091878_b.pdb or /var/tmp/from_scwrl_408091878_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_755467862.pdb -s /var/tmp/to_scwrl_755467862.seq -o /var/tmp/from_scwrl_755467862.pdb > /var/tmp/scwrl_755467862.log Error: can't open any of /var/tmp/from_scwrl_755467862.pdb or /var/tmp/from_scwrl_755467862_b.pdb or /var/tmp/from_scwrl_755467862_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1407343754.pdb -s /var/tmp/to_scwrl_1407343754.seq -o /var/tmp/from_scwrl_1407343754.pdb > /var/tmp/scwrl_1407343754.log Error: can't open any of /var/tmp/from_scwrl_1407343754.pdb or /var/tmp/from_scwrl_1407343754_b.pdb or /var/tmp/from_scwrl_1407343754_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_592581781.pdb -s /var/tmp/to_scwrl_592581781.seq -o /var/tmp/from_scwrl_592581781.pdb > /var/tmp/scwrl_592581781.log Error: can't open any of /var/tmp/from_scwrl_592581781.pdb or /var/tmp/from_scwrl_592581781_b.pdb or /var/tmp/from_scwrl_592581781_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_495727366.pdb -s /var/tmp/to_scwrl_495727366.seq -o /var/tmp/from_scwrl_495727366.pdb > /var/tmp/scwrl_495727366.log Error: can't open any of /var/tmp/from_scwrl_495727366.pdb or /var/tmp/from_scwrl_495727366_b.pdb or /var/tmp/from_scwrl_495727366_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1473722875.pdb -s /var/tmp/to_scwrl_1473722875.seq -o /var/tmp/from_scwrl_1473722875.pdb > /var/tmp/scwrl_1473722875.log Error: can't open any of /var/tmp/from_scwrl_1473722875.pdb or /var/tmp/from_scwrl_1473722875_b.pdb or /var/tmp/from_scwrl_1473722875_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1500556430.pdb -s /var/tmp/to_scwrl_1500556430.seq -o /var/tmp/from_scwrl_1500556430.pdb > /var/tmp/scwrl_1500556430.log Error: can't open any of /var/tmp/from_scwrl_1500556430.pdb or /var/tmp/from_scwrl_1500556430_b.pdb or /var/tmp/from_scwrl_1500556430_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_413780869.pdb -s /var/tmp/to_scwrl_413780869.seq -o /var/tmp/from_scwrl_413780869.pdb > /var/tmp/scwrl_413780869.log Error: can't open any of /var/tmp/from_scwrl_413780869.pdb or /var/tmp/from_scwrl_413780869_b.pdb or /var/tmp/from_scwrl_413780869_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1509125625.pdb -s /var/tmp/to_scwrl_1509125625.seq -o /var/tmp/from_scwrl_1509125625.pdb > /var/tmp/scwrl_1509125625.log Error: can't open any of /var/tmp/from_scwrl_1509125625.pdb or /var/tmp/from_scwrl_1509125625_b.pdb or /var/tmp/from_scwrl_1509125625_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_913668535.pdb -s /var/tmp/to_scwrl_913668535.seq -o /var/tmp/from_scwrl_913668535.pdb > /var/tmp/scwrl_913668535.log Error: can't open any of /var/tmp/from_scwrl_913668535.pdb or /var/tmp/from_scwrl_913668535_b.pdb or /var/tmp/from_scwrl_913668535_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_654090456.pdb -s /var/tmp/to_scwrl_654090456.seq -o /var/tmp/from_scwrl_654090456.pdb > /var/tmp/scwrl_654090456.log Error: can't open any of /var/tmp/from_scwrl_654090456.pdb or /var/tmp/from_scwrl_654090456_b.pdb or /var/tmp/from_scwrl_654090456_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_729381536.pdb -s /var/tmp/to_scwrl_729381536.seq -o /var/tmp/from_scwrl_729381536.pdb > /var/tmp/scwrl_729381536.log Error: can't open any of /var/tmp/from_scwrl_729381536.pdb or /var/tmp/from_scwrl_729381536_b.pdb or /var/tmp/from_scwrl_729381536_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1021872997.pdb -s /var/tmp/to_scwrl_1021872997.seq -o /var/tmp/from_scwrl_1021872997.pdb > /var/tmp/scwrl_1021872997.log Error: can't open any of /var/tmp/from_scwrl_1021872997.pdb or /var/tmp/from_scwrl_1021872997_b.pdb or /var/tmp/from_scwrl_1021872997_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_689432502.pdb -s /var/tmp/to_scwrl_689432502.seq -o /var/tmp/from_scwrl_689432502.pdb > /var/tmp/scwrl_689432502.log Error: can't open any of /var/tmp/from_scwrl_689432502.pdb or /var/tmp/from_scwrl_689432502_b.pdb or /var/tmp/from_scwrl_689432502_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1201691.pdb -s /var/tmp/to_scwrl_1201691.seq -o /var/tmp/from_scwrl_1201691.pdb > /var/tmp/scwrl_1201691.log Error: can't open any of /var/tmp/from_scwrl_1201691.pdb or /var/tmp/from_scwrl_1201691_b.pdb or /var/tmp/from_scwrl_1201691_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1030668782.pdb -s /var/tmp/to_scwrl_1030668782.seq -o /var/tmp/from_scwrl_1030668782.pdb > /var/tmp/scwrl_1030668782.log Error: can't open any of /var/tmp/from_scwrl_1030668782.pdb or /var/tmp/from_scwrl_1030668782_b.pdb or /var/tmp/from_scwrl_1030668782_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_997529229.pdb -s /var/tmp/to_scwrl_997529229.seq -o /var/tmp/from_scwrl_997529229.pdb > /var/tmp/scwrl_997529229.log Error: can't open any of /var/tmp/from_scwrl_997529229.pdb or /var/tmp/from_scwrl_997529229_b.pdb or /var/tmp/from_scwrl_997529229_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_923158612.pdb -s /var/tmp/to_scwrl_923158612.seq -o /var/tmp/from_scwrl_923158612.pdb > /var/tmp/scwrl_923158612.log Error: can't open any of /var/tmp/from_scwrl_923158612.pdb or /var/tmp/from_scwrl_923158612_b.pdb or /var/tmp/from_scwrl_923158612_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2113779168.pdb -s /var/tmp/to_scwrl_2113779168.seq -o /var/tmp/from_scwrl_2113779168.pdb > /var/tmp/scwrl_2113779168.log Error: can't open any of /var/tmp/from_scwrl_2113779168.pdb or /var/tmp/from_scwrl_2113779168_b.pdb or /var/tmp/from_scwrl_2113779168_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1877927209.pdb -s /var/tmp/to_scwrl_1877927209.seq -o /var/tmp/from_scwrl_1877927209.pdb > /var/tmp/scwrl_1877927209.log Error: can't open any of /var/tmp/from_scwrl_1877927209.pdb or /var/tmp/from_scwrl_1877927209_b.pdb or /var/tmp/from_scwrl_1877927209_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_769846576.pdb -s /var/tmp/to_scwrl_769846576.seq -o /var/tmp/from_scwrl_769846576.pdb > /var/tmp/scwrl_769846576.log Error: can't open any of /var/tmp/from_scwrl_769846576.pdb or /var/tmp/from_scwrl_769846576_b.pdb or /var/tmp/from_scwrl_769846576_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 215 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1697378379.pdb -s /var/tmp/to_scwrl_1697378379.seq -o /var/tmp/from_scwrl_1697378379.pdb > /var/tmp/scwrl_1697378379.log Error: can't open any of /var/tmp/from_scwrl_1697378379.pdb or /var/tmp/from_scwrl_1697378379_b.pdb or /var/tmp/from_scwrl_1697378379_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_24162273.pdb -s /var/tmp/to_scwrl_24162273.seq -o /var/tmp/from_scwrl_24162273.pdb > /var/tmp/scwrl_24162273.log Error: can't open any of /var/tmp/from_scwrl_24162273.pdb or /var/tmp/from_scwrl_24162273_b.pdb or /var/tmp/from_scwrl_24162273_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1476881287.pdb -s /var/tmp/to_scwrl_1476881287.seq -o /var/tmp/from_scwrl_1476881287.pdb > /var/tmp/scwrl_1476881287.log Error: can't open any of /var/tmp/from_scwrl_1476881287.pdb or /var/tmp/from_scwrl_1476881287_b.pdb or /var/tmp/from_scwrl_1476881287_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_163928906.pdb -s /var/tmp/to_scwrl_163928906.seq -o /var/tmp/from_scwrl_163928906.pdb > /var/tmp/scwrl_163928906.log Error: can't open any of /var/tmp/from_scwrl_163928906.pdb or /var/tmp/from_scwrl_163928906_b.pdb or /var/tmp/from_scwrl_163928906_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_611899442.pdb -s /var/tmp/to_scwrl_611899442.seq -o /var/tmp/from_scwrl_611899442.pdb > /var/tmp/scwrl_611899442.log Error: can't open any of /var/tmp/from_scwrl_611899442.pdb or /var/tmp/from_scwrl_611899442_b.pdb or /var/tmp/from_scwrl_611899442_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_370468793.pdb -s /var/tmp/to_scwrl_370468793.seq -o /var/tmp/from_scwrl_370468793.pdb > /var/tmp/scwrl_370468793.log Error: can't open any of /var/tmp/from_scwrl_370468793.pdb or /var/tmp/from_scwrl_370468793_b.pdb or /var/tmp/from_scwrl_370468793_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_227943923.pdb -s /var/tmp/to_scwrl_227943923.seq -o /var/tmp/from_scwrl_227943923.pdb > /var/tmp/scwrl_227943923.log Error: can't open any of /var/tmp/from_scwrl_227943923.pdb or /var/tmp/from_scwrl_227943923_b.pdb or /var/tmp/from_scwrl_227943923_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2127941214.pdb -s /var/tmp/to_scwrl_2127941214.seq -o /var/tmp/from_scwrl_2127941214.pdb > /var/tmp/scwrl_2127941214.log Error: can't open any of /var/tmp/from_scwrl_2127941214.pdb or /var/tmp/from_scwrl_2127941214_b.pdb or /var/tmp/from_scwrl_2127941214_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_773915437.pdb -s /var/tmp/to_scwrl_773915437.seq -o /var/tmp/from_scwrl_773915437.pdb > /var/tmp/scwrl_773915437.log Error: can't open any of /var/tmp/from_scwrl_773915437.pdb or /var/tmp/from_scwrl_773915437_b.pdb or /var/tmp/from_scwrl_773915437_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1147326041.pdb -s /var/tmp/to_scwrl_1147326041.seq -o /var/tmp/from_scwrl_1147326041.pdb > /var/tmp/scwrl_1147326041.log Error: can't open any of /var/tmp/from_scwrl_1147326041.pdb or /var/tmp/from_scwrl_1147326041_b.pdb or /var/tmp/from_scwrl_1147326041_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_388549445.pdb -s /var/tmp/to_scwrl_388549445.seq -o /var/tmp/from_scwrl_388549445.pdb > /var/tmp/scwrl_388549445.log Error: can't open any of /var/tmp/from_scwrl_388549445.pdb or /var/tmp/from_scwrl_388549445_b.pdb or /var/tmp/from_scwrl_388549445_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1529383299.pdb -s /var/tmp/to_scwrl_1529383299.seq -o /var/tmp/from_scwrl_1529383299.pdb > /var/tmp/scwrl_1529383299.log Error: can't open any of /var/tmp/from_scwrl_1529383299.pdb or /var/tmp/from_scwrl_1529383299_b.pdb or /var/tmp/from_scwrl_1529383299_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_407186149.pdb -s /var/tmp/to_scwrl_407186149.seq -o /var/tmp/from_scwrl_407186149.pdb > /var/tmp/scwrl_407186149.log Error: can't open any of /var/tmp/from_scwrl_407186149.pdb or /var/tmp/from_scwrl_407186149_b.pdb or /var/tmp/from_scwrl_407186149_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # Found a chain break before 296 # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_981131227.pdb -s /var/tmp/to_scwrl_981131227.seq -o /var/tmp/from_scwrl_981131227.pdb > /var/tmp/scwrl_981131227.log Error: can't open any of /var/tmp/from_scwrl_981131227.pdb or /var/tmp/from_scwrl_981131227_b.pdb or /var/tmp/from_scwrl_981131227_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2025110665.pdb -s /var/tmp/to_scwrl_2025110665.seq -o /var/tmp/from_scwrl_2025110665.pdb > /var/tmp/scwrl_2025110665.log Error: can't open any of /var/tmp/from_scwrl_2025110665.pdb or /var/tmp/from_scwrl_2025110665_b.pdb or /var/tmp/from_scwrl_2025110665_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1880909024.pdb -s /var/tmp/to_scwrl_1880909024.seq -o /var/tmp/from_scwrl_1880909024.pdb > /var/tmp/scwrl_1880909024.log Error: can't open any of /var/tmp/from_scwrl_1880909024.pdb or /var/tmp/from_scwrl_1880909024_b.pdb or /var/tmp/from_scwrl_1880909024_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_334204010.pdb -s /var/tmp/to_scwrl_334204010.seq -o /var/tmp/from_scwrl_334204010.pdb > /var/tmp/scwrl_334204010.log Error: can't open any of /var/tmp/from_scwrl_334204010.pdb or /var/tmp/from_scwrl_334204010_b.pdb or /var/tmp/from_scwrl_334204010_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_291407887.pdb -s /var/tmp/to_scwrl_291407887.seq -o /var/tmp/from_scwrl_291407887.pdb > /var/tmp/scwrl_291407887.log Error: can't open any of /var/tmp/from_scwrl_291407887.pdb or /var/tmp/from_scwrl_291407887_b.pdb or /var/tmp/from_scwrl_291407887_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1242551002.pdb -s /var/tmp/to_scwrl_1242551002.seq -o /var/tmp/from_scwrl_1242551002.pdb > /var/tmp/scwrl_1242551002.log Error: can't open any of /var/tmp/from_scwrl_1242551002.pdb or /var/tmp/from_scwrl_1242551002_b.pdb or /var/tmp/from_scwrl_1242551002_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 285 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1247872544.pdb -s /var/tmp/to_scwrl_1247872544.seq -o /var/tmp/from_scwrl_1247872544.pdb > /var/tmp/scwrl_1247872544.log Error: can't open any of /var/tmp/from_scwrl_1247872544.pdb or /var/tmp/from_scwrl_1247872544_b.pdb or /var/tmp/from_scwrl_1247872544_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_945498344.pdb -s /var/tmp/to_scwrl_945498344.seq -o /var/tmp/from_scwrl_945498344.pdb > /var/tmp/scwrl_945498344.log Error: can't open any of /var/tmp/from_scwrl_945498344.pdb or /var/tmp/from_scwrl_945498344_b.pdb or /var/tmp/from_scwrl_945498344_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1971932538.pdb -s /var/tmp/to_scwrl_1971932538.seq -o /var/tmp/from_scwrl_1971932538.pdb > /var/tmp/scwrl_1971932538.log Error: can't open any of /var/tmp/from_scwrl_1971932538.pdb or /var/tmp/from_scwrl_1971932538_b.pdb or /var/tmp/from_scwrl_1971932538_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 283 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_122261894.pdb -s /var/tmp/to_scwrl_122261894.seq -o /var/tmp/from_scwrl_122261894.pdb > /var/tmp/scwrl_122261894.log Error: can't open any of /var/tmp/from_scwrl_122261894.pdb or /var/tmp/from_scwrl_122261894_b.pdb or /var/tmp/from_scwrl_122261894_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 299 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1634930845.pdb -s /var/tmp/to_scwrl_1634930845.seq -o /var/tmp/from_scwrl_1634930845.pdb > /var/tmp/scwrl_1634930845.log Error: can't open any of /var/tmp/from_scwrl_1634930845.pdb or /var/tmp/from_scwrl_1634930845_b.pdb or /var/tmp/from_scwrl_1634930845_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1973134230.pdb -s /var/tmp/to_scwrl_1973134230.seq -o /var/tmp/from_scwrl_1973134230.pdb > /var/tmp/scwrl_1973134230.log Error: can't open any of /var/tmp/from_scwrl_1973134230.pdb or /var/tmp/from_scwrl_1973134230_b.pdb or /var/tmp/from_scwrl_1973134230_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 305 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1152930675.pdb -s /var/tmp/to_scwrl_1152930675.seq -o /var/tmp/from_scwrl_1152930675.pdb > /var/tmp/scwrl_1152930675.log Error: can't open any of /var/tmp/from_scwrl_1152930675.pdb or /var/tmp/from_scwrl_1152930675_b.pdb or /var/tmp/from_scwrl_1152930675_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_484976428.pdb -s /var/tmp/to_scwrl_484976428.seq -o /var/tmp/from_scwrl_484976428.pdb > /var/tmp/scwrl_484976428.log Error: can't open any of /var/tmp/from_scwrl_484976428.pdb or /var/tmp/from_scwrl_484976428_b.pdb or /var/tmp/from_scwrl_484976428_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_748809195.pdb -s /var/tmp/to_scwrl_748809195.seq -o /var/tmp/from_scwrl_748809195.pdb > /var/tmp/scwrl_748809195.log Error: can't open any of /var/tmp/from_scwrl_748809195.pdb or /var/tmp/from_scwrl_748809195_b.pdb or /var/tmp/from_scwrl_748809195_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1119226196.pdb -s /var/tmp/to_scwrl_1119226196.seq -o /var/tmp/from_scwrl_1119226196.pdb > /var/tmp/scwrl_1119226196.log Error: can't open any of /var/tmp/from_scwrl_1119226196.pdb or /var/tmp/from_scwrl_1119226196_b.pdb or /var/tmp/from_scwrl_1119226196_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 287 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_215419990.pdb -s /var/tmp/to_scwrl_215419990.seq -o /var/tmp/from_scwrl_215419990.pdb > /var/tmp/scwrl_215419990.log Error: can't open any of /var/tmp/from_scwrl_215419990.pdb or /var/tmp/from_scwrl_215419990_b.pdb or /var/tmp/from_scwrl_215419990_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 288 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1518655771.pdb -s /var/tmp/to_scwrl_1518655771.seq -o /var/tmp/from_scwrl_1518655771.pdb > /var/tmp/scwrl_1518655771.log Error: can't open any of /var/tmp/from_scwrl_1518655771.pdb or /var/tmp/from_scwrl_1518655771_b.pdb or /var/tmp/from_scwrl_1518655771_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_669120930.pdb -s /var/tmp/to_scwrl_669120930.seq -o /var/tmp/from_scwrl_669120930.pdb > /var/tmp/scwrl_669120930.log Error: can't open any of /var/tmp/from_scwrl_669120930.pdb or /var/tmp/from_scwrl_669120930_b.pdb or /var/tmp/from_scwrl_669120930_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 224 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_239582264.pdb -s /var/tmp/to_scwrl_239582264.seq -o /var/tmp/from_scwrl_239582264.pdb > /var/tmp/scwrl_239582264.log Error: can't open any of /var/tmp/from_scwrl_239582264.pdb or /var/tmp/from_scwrl_239582264_b.pdb or /var/tmp/from_scwrl_239582264_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 194 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_848053412.pdb -s /var/tmp/to_scwrl_848053412.seq -o /var/tmp/from_scwrl_848053412.pdb > /var/tmp/scwrl_848053412.log Error: can't open any of /var/tmp/from_scwrl_848053412.pdb or /var/tmp/from_scwrl_848053412_b.pdb or /var/tmp/from_scwrl_848053412_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 265 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_833049836.pdb -s /var/tmp/to_scwrl_833049836.seq -o /var/tmp/from_scwrl_833049836.pdb > /var/tmp/scwrl_833049836.log Error: can't open any of /var/tmp/from_scwrl_833049836.pdb or /var/tmp/from_scwrl_833049836_b.pdb or /var/tmp/from_scwrl_833049836_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 262 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_851481706.pdb -s /var/tmp/to_scwrl_851481706.seq -o /var/tmp/from_scwrl_851481706.pdb > /var/tmp/scwrl_851481706.log Error: can't open any of /var/tmp/from_scwrl_851481706.pdb or /var/tmp/from_scwrl_851481706_b.pdb or /var/tmp/from_scwrl_851481706_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 177 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1218522204.pdb -s /var/tmp/to_scwrl_1218522204.seq -o /var/tmp/from_scwrl_1218522204.pdb > /var/tmp/scwrl_1218522204.log Error: can't open any of /var/tmp/from_scwrl_1218522204.pdb or /var/tmp/from_scwrl_1218522204_b.pdb or /var/tmp/from_scwrl_1218522204_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 156 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1060993759.pdb -s /var/tmp/to_scwrl_1060993759.seq -o /var/tmp/from_scwrl_1060993759.pdb > /var/tmp/scwrl_1060993759.log Error: can't open any of /var/tmp/from_scwrl_1060993759.pdb or /var/tmp/from_scwrl_1060993759_b.pdb or /var/tmp/from_scwrl_1060993759_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 259 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_831939273.pdb -s /var/tmp/to_scwrl_831939273.seq -o /var/tmp/from_scwrl_831939273.pdb > /var/tmp/scwrl_831939273.log Error: can't open any of /var/tmp/from_scwrl_831939273.pdb or /var/tmp/from_scwrl_831939273_b.pdb or /var/tmp/from_scwrl_831939273_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 163 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1992437642.pdb -s /var/tmp/to_scwrl_1992437642.seq -o /var/tmp/from_scwrl_1992437642.pdb > /var/tmp/scwrl_1992437642.log Error: can't open any of /var/tmp/from_scwrl_1992437642.pdb or /var/tmp/from_scwrl_1992437642_b.pdb or /var/tmp/from_scwrl_1992437642_a.pdb Error: no new SCWRL conformation added # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_60836153.pdb -s /var/tmp/to_scwrl_60836153.seq -o /var/tmp/from_scwrl_60836153.pdb > /var/tmp/scwrl_60836153.log Error: can't open any of /var/tmp/from_scwrl_60836153.pdb or /var/tmp/from_scwrl_60836153_b.pdb or /var/tmp/from_scwrl_60836153_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1220488718.pdb -s /var/tmp/to_scwrl_1220488718.seq -o /var/tmp/from_scwrl_1220488718.pdb > /var/tmp/scwrl_1220488718.log Error: can't open any of /var/tmp/from_scwrl_1220488718.pdb or /var/tmp/from_scwrl_1220488718_b.pdb or /var/tmp/from_scwrl_1220488718_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1374337294.pdb -s /var/tmp/to_scwrl_1374337294.seq -o /var/tmp/from_scwrl_1374337294.pdb > /var/tmp/scwrl_1374337294.log Error: can't open any of /var/tmp/from_scwrl_1374337294.pdb or /var/tmp/from_scwrl_1374337294_b.pdb or /var/tmp/from_scwrl_1374337294_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_468022302.pdb -s /var/tmp/to_scwrl_468022302.seq -o /var/tmp/from_scwrl_468022302.pdb > /var/tmp/scwrl_468022302.log Error: can't open any of /var/tmp/from_scwrl_468022302.pdb or /var/tmp/from_scwrl_468022302_b.pdb or /var/tmp/from_scwrl_468022302_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_54136298.pdb -s /var/tmp/to_scwrl_54136298.seq -o /var/tmp/from_scwrl_54136298.pdb > /var/tmp/scwrl_54136298.log Error: can't open any of /var/tmp/from_scwrl_54136298.pdb or /var/tmp/from_scwrl_54136298_b.pdb or /var/tmp/from_scwrl_54136298_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1251964312.pdb -s /var/tmp/to_scwrl_1251964312.seq -o /var/tmp/from_scwrl_1251964312.pdb > /var/tmp/scwrl_1251964312.log Error: can't open any of /var/tmp/from_scwrl_1251964312.pdb or /var/tmp/from_scwrl_1251964312_b.pdb or /var/tmp/from_scwrl_1251964312_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_201447679.pdb -s /var/tmp/to_scwrl_201447679.seq -o /var/tmp/from_scwrl_201447679.pdb > /var/tmp/scwrl_201447679.log Error: can't open any of /var/tmp/from_scwrl_201447679.pdb or /var/tmp/from_scwrl_201447679_b.pdb or /var/tmp/from_scwrl_201447679_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_388340308.pdb -s /var/tmp/to_scwrl_388340308.seq -o /var/tmp/from_scwrl_388340308.pdb > /var/tmp/scwrl_388340308.log Error: can't open any of /var/tmp/from_scwrl_388340308.pdb or /var/tmp/from_scwrl_388340308_b.pdb or /var/tmp/from_scwrl_388340308_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1543372199.pdb -s /var/tmp/to_scwrl_1543372199.seq -o /var/tmp/from_scwrl_1543372199.pdb > /var/tmp/scwrl_1543372199.log Error: can't open any of /var/tmp/from_scwrl_1543372199.pdb or /var/tmp/from_scwrl_1543372199_b.pdb or /var/tmp/from_scwrl_1543372199_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1443998681.pdb -s /var/tmp/to_scwrl_1443998681.seq -o /var/tmp/from_scwrl_1443998681.pdb > /var/tmp/scwrl_1443998681.log Error: can't open any of /var/tmp/from_scwrl_1443998681.pdb or /var/tmp/from_scwrl_1443998681_b.pdb or /var/tmp/from_scwrl_1443998681_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1636212852.pdb -s /var/tmp/to_scwrl_1636212852.seq -o /var/tmp/from_scwrl_1636212852.pdb > /var/tmp/scwrl_1636212852.log Error: can't open any of /var/tmp/from_scwrl_1636212852.pdb or /var/tmp/from_scwrl_1636212852_b.pdb or /var/tmp/from_scwrl_1636212852_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_341386896.pdb -s /var/tmp/to_scwrl_341386896.seq -o /var/tmp/from_scwrl_341386896.pdb > /var/tmp/scwrl_341386896.log Error: can't open any of /var/tmp/from_scwrl_341386896.pdb or /var/tmp/from_scwrl_341386896_b.pdb or /var/tmp/from_scwrl_341386896_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1268447572.pdb -s /var/tmp/to_scwrl_1268447572.seq -o /var/tmp/from_scwrl_1268447572.pdb > /var/tmp/scwrl_1268447572.log Error: can't open any of /var/tmp/from_scwrl_1268447572.pdb or /var/tmp/from_scwrl_1268447572_b.pdb or /var/tmp/from_scwrl_1268447572_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1758474746.pdb -s /var/tmp/to_scwrl_1758474746.seq -o /var/tmp/from_scwrl_1758474746.pdb > /var/tmp/scwrl_1758474746.log Error: can't open any of /var/tmp/from_scwrl_1758474746.pdb or /var/tmp/from_scwrl_1758474746_b.pdb or /var/tmp/from_scwrl_1758474746_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1976317742.pdb -s /var/tmp/to_scwrl_1976317742.seq -o /var/tmp/from_scwrl_1976317742.pdb > /var/tmp/scwrl_1976317742.log Error: can't open any of /var/tmp/from_scwrl_1976317742.pdb or /var/tmp/from_scwrl_1976317742_b.pdb or /var/tmp/from_scwrl_1976317742_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 258 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1094098155.pdb -s /var/tmp/to_scwrl_1094098155.seq -o /var/tmp/from_scwrl_1094098155.pdb > /var/tmp/scwrl_1094098155.log Error: can't open any of /var/tmp/from_scwrl_1094098155.pdb or /var/tmp/from_scwrl_1094098155_b.pdb or /var/tmp/from_scwrl_1094098155_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_763921776.pdb -s /var/tmp/to_scwrl_763921776.seq -o /var/tmp/from_scwrl_763921776.pdb > /var/tmp/scwrl_763921776.log Error: can't open any of /var/tmp/from_scwrl_763921776.pdb or /var/tmp/from_scwrl_763921776_b.pdb or /var/tmp/from_scwrl_763921776_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 290 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_313810523.pdb -s /var/tmp/to_scwrl_313810523.seq -o /var/tmp/from_scwrl_313810523.pdb > /var/tmp/scwrl_313810523.log Error: can't open any of /var/tmp/from_scwrl_313810523.pdb or /var/tmp/from_scwrl_313810523_b.pdb or /var/tmp/from_scwrl_313810523_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1842907351.pdb -s /var/tmp/to_scwrl_1842907351.seq -o /var/tmp/from_scwrl_1842907351.pdb > /var/tmp/scwrl_1842907351.log Error: can't open any of /var/tmp/from_scwrl_1842907351.pdb or /var/tmp/from_scwrl_1842907351_b.pdb or /var/tmp/from_scwrl_1842907351_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 274 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1883147972.pdb -s /var/tmp/to_scwrl_1883147972.seq -o /var/tmp/from_scwrl_1883147972.pdb > /var/tmp/scwrl_1883147972.log Error: can't open any of /var/tmp/from_scwrl_1883147972.pdb or /var/tmp/from_scwrl_1883147972_b.pdb or /var/tmp/from_scwrl_1883147972_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 236 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_529230513.pdb -s /var/tmp/to_scwrl_529230513.seq -o /var/tmp/from_scwrl_529230513.pdb > /var/tmp/scwrl_529230513.log Error: can't open any of /var/tmp/from_scwrl_529230513.pdb or /var/tmp/from_scwrl_529230513_b.pdb or /var/tmp/from_scwrl_529230513_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 266 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1214079475.pdb -s /var/tmp/to_scwrl_1214079475.seq -o /var/tmp/from_scwrl_1214079475.pdb > /var/tmp/scwrl_1214079475.log Error: can't open any of /var/tmp/from_scwrl_1214079475.pdb or /var/tmp/from_scwrl_1214079475_b.pdb or /var/tmp/from_scwrl_1214079475_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 242 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_404785255.pdb -s /var/tmp/to_scwrl_404785255.seq -o /var/tmp/from_scwrl_404785255.pdb > /var/tmp/scwrl_404785255.log Error: can't open any of /var/tmp/from_scwrl_404785255.pdb or /var/tmp/from_scwrl_404785255_b.pdb or /var/tmp/from_scwrl_404785255_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 240 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_768812777.pdb -s /var/tmp/to_scwrl_768812777.seq -o /var/tmp/from_scwrl_768812777.pdb > /var/tmp/scwrl_768812777.log Error: can't open any of /var/tmp/from_scwrl_768812777.pdb or /var/tmp/from_scwrl_768812777_b.pdb or /var/tmp/from_scwrl_768812777_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 286 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2062132887.pdb -s /var/tmp/to_scwrl_2062132887.seq -o /var/tmp/from_scwrl_2062132887.pdb > /var/tmp/scwrl_2062132887.log Error: can't open any of /var/tmp/from_scwrl_2062132887.pdb or /var/tmp/from_scwrl_2062132887_b.pdb or /var/tmp/from_scwrl_2062132887_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1237835090.pdb -s /var/tmp/to_scwrl_1237835090.seq -o /var/tmp/from_scwrl_1237835090.pdb > /var/tmp/scwrl_1237835090.log Error: can't open any of /var/tmp/from_scwrl_1237835090.pdb or /var/tmp/from_scwrl_1237835090_b.pdb or /var/tmp/from_scwrl_1237835090_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 193 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1620294482.pdb -s /var/tmp/to_scwrl_1620294482.seq -o /var/tmp/from_scwrl_1620294482.pdb > /var/tmp/scwrl_1620294482.log Error: can't open any of /var/tmp/from_scwrl_1620294482.pdb or /var/tmp/from_scwrl_1620294482_b.pdb or /var/tmp/from_scwrl_1620294482_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 197 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1133171445.pdb -s /var/tmp/to_scwrl_1133171445.seq -o /var/tmp/from_scwrl_1133171445.pdb > /var/tmp/scwrl_1133171445.log Error: can't open any of /var/tmp/from_scwrl_1133171445.pdb or /var/tmp/from_scwrl_1133171445_b.pdb or /var/tmp/from_scwrl_1133171445_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 271 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_151345202.pdb -s /var/tmp/to_scwrl_151345202.seq -o /var/tmp/from_scwrl_151345202.pdb > /var/tmp/scwrl_151345202.log Error: can't open any of /var/tmp/from_scwrl_151345202.pdb or /var/tmp/from_scwrl_151345202_b.pdb or /var/tmp/from_scwrl_151345202_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 293 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_304750109.pdb -s /var/tmp/to_scwrl_304750109.seq -o /var/tmp/from_scwrl_304750109.pdb > /var/tmp/scwrl_304750109.log Error: can't open any of /var/tmp/from_scwrl_304750109.pdb or /var/tmp/from_scwrl_304750109_b.pdb or /var/tmp/from_scwrl_304750109_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_978125441.pdb -s /var/tmp/to_scwrl_978125441.seq -o /var/tmp/from_scwrl_978125441.pdb > /var/tmp/scwrl_978125441.log Error: can't open any of /var/tmp/from_scwrl_978125441.pdb or /var/tmp/from_scwrl_978125441_b.pdb or /var/tmp/from_scwrl_978125441_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_212181355.pdb -s /var/tmp/to_scwrl_212181355.seq -o /var/tmp/from_scwrl_212181355.pdb > /var/tmp/scwrl_212181355.log Error: can't open any of /var/tmp/from_scwrl_212181355.pdb or /var/tmp/from_scwrl_212181355_b.pdb or /var/tmp/from_scwrl_212181355_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1525238827.pdb -s /var/tmp/to_scwrl_1525238827.seq -o /var/tmp/from_scwrl_1525238827.pdb > /var/tmp/scwrl_1525238827.log Error: can't open any of /var/tmp/from_scwrl_1525238827.pdb or /var/tmp/from_scwrl_1525238827_b.pdb or /var/tmp/from_scwrl_1525238827_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_204979088.pdb -s /var/tmp/to_scwrl_204979088.seq -o /var/tmp/from_scwrl_204979088.pdb > /var/tmp/scwrl_204979088.log Error: can't open any of /var/tmp/from_scwrl_204979088.pdb or /var/tmp/from_scwrl_204979088_b.pdb or /var/tmp/from_scwrl_204979088_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_680203657.pdb -s /var/tmp/to_scwrl_680203657.seq -o /var/tmp/from_scwrl_680203657.pdb > /var/tmp/scwrl_680203657.log Error: can't open any of /var/tmp/from_scwrl_680203657.pdb or /var/tmp/from_scwrl_680203657_b.pdb or /var/tmp/from_scwrl_680203657_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1579375125.pdb -s /var/tmp/to_scwrl_1579375125.seq -o /var/tmp/from_scwrl_1579375125.pdb > /var/tmp/scwrl_1579375125.log Error: can't open any of /var/tmp/from_scwrl_1579375125.pdb or /var/tmp/from_scwrl_1579375125_b.pdb or /var/tmp/from_scwrl_1579375125_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1456943400.pdb -s /var/tmp/to_scwrl_1456943400.seq -o /var/tmp/from_scwrl_1456943400.pdb > /var/tmp/scwrl_1456943400.log Error: can't open any of /var/tmp/from_scwrl_1456943400.pdb or /var/tmp/from_scwrl_1456943400_b.pdb or /var/tmp/from_scwrl_1456943400_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_881651336.pdb -s /var/tmp/to_scwrl_881651336.seq -o /var/tmp/from_scwrl_881651336.pdb > /var/tmp/scwrl_881651336.log Error: can't open any of /var/tmp/from_scwrl_881651336.pdb or /var/tmp/from_scwrl_881651336_b.pdb or /var/tmp/from_scwrl_881651336_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 302 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1967715433.pdb -s /var/tmp/to_scwrl_1967715433.seq -o /var/tmp/from_scwrl_1967715433.pdb > /var/tmp/scwrl_1967715433.log Error: can't open any of /var/tmp/from_scwrl_1967715433.pdb or /var/tmp/from_scwrl_1967715433_b.pdb or /var/tmp/from_scwrl_1967715433_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 301 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_852831953.pdb -s /var/tmp/to_scwrl_852831953.seq -o /var/tmp/from_scwrl_852831953.pdb > /var/tmp/scwrl_852831953.log Error: can't open any of /var/tmp/from_scwrl_852831953.pdb or /var/tmp/from_scwrl_852831953_b.pdb or /var/tmp/from_scwrl_852831953_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 304 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_178166370.pdb -s /var/tmp/to_scwrl_178166370.seq -o /var/tmp/from_scwrl_178166370.pdb > /var/tmp/scwrl_178166370.log Error: can't open any of /var/tmp/from_scwrl_178166370.pdb or /var/tmp/from_scwrl_178166370_b.pdb or /var/tmp/from_scwrl_178166370_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1456444638.pdb -s /var/tmp/to_scwrl_1456444638.seq -o /var/tmp/from_scwrl_1456444638.pdb > /var/tmp/scwrl_1456444638.log Error: can't open any of /var/tmp/from_scwrl_1456444638.pdb or /var/tmp/from_scwrl_1456444638_b.pdb or /var/tmp/from_scwrl_1456444638_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1194218849.pdb -s /var/tmp/to_scwrl_1194218849.seq -o /var/tmp/from_scwrl_1194218849.pdb > /var/tmp/scwrl_1194218849.log Error: can't open any of /var/tmp/from_scwrl_1194218849.pdb or /var/tmp/from_scwrl_1194218849_b.pdb or /var/tmp/from_scwrl_1194218849_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1446613943.pdb -s /var/tmp/to_scwrl_1446613943.seq -o /var/tmp/from_scwrl_1446613943.pdb > /var/tmp/scwrl_1446613943.log Error: can't open any of /var/tmp/from_scwrl_1446613943.pdb or /var/tmp/from_scwrl_1446613943_b.pdb or /var/tmp/from_scwrl_1446613943_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1067435738.pdb -s /var/tmp/to_scwrl_1067435738.seq -o /var/tmp/from_scwrl_1067435738.pdb > /var/tmp/scwrl_1067435738.log Error: can't open any of /var/tmp/from_scwrl_1067435738.pdb or /var/tmp/from_scwrl_1067435738_b.pdb or /var/tmp/from_scwrl_1067435738_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1023052945.pdb -s /var/tmp/to_scwrl_1023052945.seq -o /var/tmp/from_scwrl_1023052945.pdb > /var/tmp/scwrl_1023052945.log Error: can't open any of /var/tmp/from_scwrl_1023052945.pdb or /var/tmp/from_scwrl_1023052945_b.pdb or /var/tmp/from_scwrl_1023052945_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_393228452.pdb -s /var/tmp/to_scwrl_393228452.seq -o /var/tmp/from_scwrl_393228452.pdb > /var/tmp/scwrl_393228452.log Error: can't open any of /var/tmp/from_scwrl_393228452.pdb or /var/tmp/from_scwrl_393228452_b.pdb or /var/tmp/from_scwrl_393228452_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1831357513.pdb -s /var/tmp/to_scwrl_1831357513.seq -o /var/tmp/from_scwrl_1831357513.pdb > /var/tmp/scwrl_1831357513.log Error: can't open any of /var/tmp/from_scwrl_1831357513.pdb or /var/tmp/from_scwrl_1831357513_b.pdb or /var/tmp/from_scwrl_1831357513_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1336863467.pdb -s /var/tmp/to_scwrl_1336863467.seq -o /var/tmp/from_scwrl_1336863467.pdb > /var/tmp/scwrl_1336863467.log Error: can't open any of /var/tmp/from_scwrl_1336863467.pdb or /var/tmp/from_scwrl_1336863467_b.pdb or /var/tmp/from_scwrl_1336863467_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_88652156.pdb -s /var/tmp/to_scwrl_88652156.seq -o /var/tmp/from_scwrl_88652156.pdb > /var/tmp/scwrl_88652156.log Error: can't open any of /var/tmp/from_scwrl_88652156.pdb or /var/tmp/from_scwrl_88652156_b.pdb or /var/tmp/from_scwrl_88652156_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1567021839.pdb -s /var/tmp/to_scwrl_1567021839.seq -o /var/tmp/from_scwrl_1567021839.pdb > /var/tmp/scwrl_1567021839.log Error: can't open any of /var/tmp/from_scwrl_1567021839.pdb or /var/tmp/from_scwrl_1567021839_b.pdb or /var/tmp/from_scwrl_1567021839_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1866093980.pdb -s /var/tmp/to_scwrl_1866093980.seq -o /var/tmp/from_scwrl_1866093980.pdb > /var/tmp/scwrl_1866093980.log Error: can't open any of /var/tmp/from_scwrl_1866093980.pdb or /var/tmp/from_scwrl_1866093980_b.pdb or /var/tmp/from_scwrl_1866093980_a.pdb Error: no new SCWRL conformation added # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1302731631.pdb -s /var/tmp/to_scwrl_1302731631.seq -o /var/tmp/from_scwrl_1302731631.pdb > /var/tmp/scwrl_1302731631.log Error: can't open any of /var/tmp/from_scwrl_1302731631.pdb or /var/tmp/from_scwrl_1302731631_b.pdb or /var/tmp/from_scwrl_1302731631_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1971807094.pdb -s /var/tmp/to_scwrl_1971807094.seq -o /var/tmp/from_scwrl_1971807094.pdb > /var/tmp/scwrl_1971807094.log Error: can't open any of /var/tmp/from_scwrl_1971807094.pdb or /var/tmp/from_scwrl_1971807094_b.pdb or /var/tmp/from_scwrl_1971807094_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_487423111.pdb -s /var/tmp/to_scwrl_487423111.seq -o /var/tmp/from_scwrl_487423111.pdb > /var/tmp/scwrl_487423111.log Error: can't open any of /var/tmp/from_scwrl_487423111.pdb or /var/tmp/from_scwrl_487423111_b.pdb or /var/tmp/from_scwrl_487423111_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1217380872.pdb -s /var/tmp/to_scwrl_1217380872.seq -o /var/tmp/from_scwrl_1217380872.pdb > /var/tmp/scwrl_1217380872.log Error: can't open any of /var/tmp/from_scwrl_1217380872.pdb or /var/tmp/from_scwrl_1217380872_b.pdb or /var/tmp/from_scwrl_1217380872_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1062158539.pdb -s /var/tmp/to_scwrl_1062158539.seq -o /var/tmp/from_scwrl_1062158539.pdb > /var/tmp/scwrl_1062158539.log Error: can't open any of /var/tmp/from_scwrl_1062158539.pdb or /var/tmp/from_scwrl_1062158539_b.pdb or /var/tmp/from_scwrl_1062158539_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2107717593.pdb -s /var/tmp/to_scwrl_2107717593.seq -o /var/tmp/from_scwrl_2107717593.pdb > /var/tmp/scwrl_2107717593.log Error: can't open any of /var/tmp/from_scwrl_2107717593.pdb or /var/tmp/from_scwrl_2107717593_b.pdb or /var/tmp/from_scwrl_2107717593_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_203068671.pdb -s /var/tmp/to_scwrl_203068671.seq -o /var/tmp/from_scwrl_203068671.pdb > /var/tmp/scwrl_203068671.log Error: can't open any of /var/tmp/from_scwrl_203068671.pdb or /var/tmp/from_scwrl_203068671_b.pdb or /var/tmp/from_scwrl_203068671_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 300 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1213503740.pdb -s /var/tmp/to_scwrl_1213503740.seq -o /var/tmp/from_scwrl_1213503740.pdb > /var/tmp/scwrl_1213503740.log Error: can't open any of /var/tmp/from_scwrl_1213503740.pdb or /var/tmp/from_scwrl_1213503740_b.pdb or /var/tmp/from_scwrl_1213503740_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 303 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_264984055.pdb -s /var/tmp/to_scwrl_264984055.seq -o /var/tmp/from_scwrl_264984055.pdb > /var/tmp/scwrl_264984055.log Error: can't open any of /var/tmp/from_scwrl_264984055.pdb or /var/tmp/from_scwrl_264984055_b.pdb or /var/tmp/from_scwrl_264984055_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1181194111.pdb -s /var/tmp/to_scwrl_1181194111.seq -o /var/tmp/from_scwrl_1181194111.pdb > /var/tmp/scwrl_1181194111.log Error: can't open any of /var/tmp/from_scwrl_1181194111.pdb or /var/tmp/from_scwrl_1181194111_b.pdb or /var/tmp/from_scwrl_1181194111_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1425685096.pdb -s /var/tmp/to_scwrl_1425685096.seq -o /var/tmp/from_scwrl_1425685096.pdb > /var/tmp/scwrl_1425685096.log Error: can't open any of /var/tmp/from_scwrl_1425685096.pdb or /var/tmp/from_scwrl_1425685096_b.pdb or /var/tmp/from_scwrl_1425685096_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # Found a chain break before 270 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1790222882.pdb -s /var/tmp/to_scwrl_1790222882.seq -o /var/tmp/from_scwrl_1790222882.pdb > /var/tmp/scwrl_1790222882.log Error: can't open any of /var/tmp/from_scwrl_1790222882.pdb or /var/tmp/from_scwrl_1790222882_b.pdb or /var/tmp/from_scwrl_1790222882_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1386173199.pdb -s /var/tmp/to_scwrl_1386173199.seq -o /var/tmp/from_scwrl_1386173199.pdb > /var/tmp/scwrl_1386173199.log Error: can't open any of /var/tmp/from_scwrl_1386173199.pdb or /var/tmp/from_scwrl_1386173199_b.pdb or /var/tmp/from_scwrl_1386173199_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_2105888753.pdb -s /var/tmp/to_scwrl_2105888753.seq -o /var/tmp/from_scwrl_2105888753.pdb > /var/tmp/scwrl_2105888753.log Error: can't open any of /var/tmp/from_scwrl_2105888753.pdb or /var/tmp/from_scwrl_2105888753_b.pdb or /var/tmp/from_scwrl_2105888753_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1222114360.pdb -s /var/tmp/to_scwrl_1222114360.seq -o /var/tmp/from_scwrl_1222114360.pdb > /var/tmp/scwrl_1222114360.log Error: can't open any of /var/tmp/from_scwrl_1222114360.pdb or /var/tmp/from_scwrl_1222114360_b.pdb or /var/tmp/from_scwrl_1222114360_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_695632953.pdb -s /var/tmp/to_scwrl_695632953.seq -o /var/tmp/from_scwrl_695632953.pdb > /var/tmp/scwrl_695632953.log Error: can't open any of /var/tmp/from_scwrl_695632953.pdb or /var/tmp/from_scwrl_695632953_b.pdb or /var/tmp/from_scwrl_695632953_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_840056443.pdb -s /var/tmp/to_scwrl_840056443.seq -o /var/tmp/from_scwrl_840056443.pdb > /var/tmp/scwrl_840056443.log Error: can't open any of /var/tmp/from_scwrl_840056443.pdb or /var/tmp/from_scwrl_840056443_b.pdb or /var/tmp/from_scwrl_840056443_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1042346147.pdb -s /var/tmp/to_scwrl_1042346147.seq -o /var/tmp/from_scwrl_1042346147.pdb > /var/tmp/scwrl_1042346147.log Error: can't open any of /var/tmp/from_scwrl_1042346147.pdb or /var/tmp/from_scwrl_1042346147_b.pdb or /var/tmp/from_scwrl_1042346147_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1548464905.pdb -s /var/tmp/to_scwrl_1548464905.seq -o /var/tmp/from_scwrl_1548464905.pdb > /var/tmp/scwrl_1548464905.log Error: can't open any of /var/tmp/from_scwrl_1548464905.pdb or /var/tmp/from_scwrl_1548464905_b.pdb or /var/tmp/from_scwrl_1548464905_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1018222813.pdb -s /var/tmp/to_scwrl_1018222813.seq -o /var/tmp/from_scwrl_1018222813.pdb > /var/tmp/scwrl_1018222813.log Error: can't open any of /var/tmp/from_scwrl_1018222813.pdb or /var/tmp/from_scwrl_1018222813_b.pdb or /var/tmp/from_scwrl_1018222813_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_351307138.pdb -s /var/tmp/to_scwrl_351307138.seq -o /var/tmp/from_scwrl_351307138.pdb > /var/tmp/scwrl_351307138.log Error: can't open any of /var/tmp/from_scwrl_351307138.pdb or /var/tmp/from_scwrl_351307138_b.pdb or /var/tmp/from_scwrl_351307138_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_595200108.pdb -s /var/tmp/to_scwrl_595200108.seq -o /var/tmp/from_scwrl_595200108.pdb > /var/tmp/scwrl_595200108.log Error: can't open any of /var/tmp/from_scwrl_595200108.pdb or /var/tmp/from_scwrl_595200108_b.pdb or /var/tmp/from_scwrl_595200108_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_317353109.pdb -s /var/tmp/to_scwrl_317353109.seq -o /var/tmp/from_scwrl_317353109.pdb > /var/tmp/scwrl_317353109.log Error: can't open any of /var/tmp/from_scwrl_317353109.pdb or /var/tmp/from_scwrl_317353109_b.pdb or /var/tmp/from_scwrl_317353109_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1418742876.pdb -s /var/tmp/to_scwrl_1418742876.seq -o /var/tmp/from_scwrl_1418742876.pdb > /var/tmp/scwrl_1418742876.log Error: can't open any of /var/tmp/from_scwrl_1418742876.pdb or /var/tmp/from_scwrl_1418742876_b.pdb or /var/tmp/from_scwrl_1418742876_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1618253052.pdb -s /var/tmp/to_scwrl_1618253052.seq -o /var/tmp/from_scwrl_1618253052.pdb > /var/tmp/scwrl_1618253052.log Error: can't open any of /var/tmp/from_scwrl_1618253052.pdb or /var/tmp/from_scwrl_1618253052_b.pdb or /var/tmp/from_scwrl_1618253052_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_710581562.pdb -s /var/tmp/to_scwrl_710581562.seq -o /var/tmp/from_scwrl_710581562.pdb > /var/tmp/scwrl_710581562.log Error: can't open any of /var/tmp/from_scwrl_710581562.pdb or /var/tmp/from_scwrl_710581562_b.pdb or /var/tmp/from_scwrl_710581562_a.pdb Error: no new SCWRL conformation added # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0320 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 276 ; scwrl -i /var/tmp/to_scwrl_1102616742.pdb -s /var/tmp/to_scwrl_1102616742.seq -o /var/tmp/from_scwrl_1102616742.pdb > /var/tmp/scwrl_1102616742.log Error: can't open any of /var/tmp/from_scwrl_1102616742.pdb or /var/tmp/from_scwrl_1102616742_b.pdb or /var/tmp/from_scwrl_1102616742_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 69.7024 sec, elapsed time= 86.2186 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 434.855 real_cost = 457.892 panther2_TS1-scwrl costs 1774.7 real_cost = 700.004 nFOLD_TS5-scwrl costs 25052.3 real_cost = 655.995 nFOLD_TS4-scwrl costs 17986.5 real_cost = 718.166 nFOLD_TS3-scwrl costs 23850.7 real_cost = 649.915 nFOLD_TS2-scwrl costs 17109.6 real_cost = 666.171 nFOLD_TS1-scwrl costs 29566.3 real_cost = 668.697 mGen-3D_TS1-scwrl costs 25703 real_cost = 662.714 keasar-server_TS5-scwrl costs 815.738 real_cost = 507.107 keasar-server_TS4-scwrl costs 412.46 real_cost = 455.261 keasar-server_TS3-scwrl costs 1035.26 real_cost = 584.673 keasar-server_TS2-scwrl costs 814.149 real_cost = 519.017 keasar-server_TS1-scwrl costs 810.405 real_cost = 527.751 karypis.srv_TS5-scwrl costs 536.332 real_cost = 455.856 karypis.srv_TS4-scwrl costs 463.211 real_cost = 454.484 karypis.srv_TS3-scwrl costs 370.576 real_cost = 442.817 karypis.srv_TS2-scwrl costs 1081.01 real_cost = 554.657 karypis.srv_TS1-scwrl costs 955.986 real_cost = 543.418 karypis.srv.4_TS5-scwrl costs 454.923 real_cost = 459.75 karypis.srv.4_TS4-scwrl costs 508.694 real_cost = 435.36 karypis.srv.4_TS3-scwrl costs 429.026 real_cost = 440.236 karypis.srv.4_TS1-scwrl costs 458.786 real_cost = 441.886 karypis.srv.2_TS5-scwrl costs 414.463 real_cost = 426.479 karypis.srv.2_TS4-scwrl costs 406.729 real_cost = 434.139 karypis.srv.2_TS3-scwrl costs 540.396 real_cost = 443.231 karypis.srv.2_TS2-scwrl costs 394.473 real_cost = 444.844 karypis.srv.2_TS1-scwrl costs 395.706 real_cost = 418.784 gtg_AL5-scwrl costs 56869.2 real_cost = 781.202 gtg_AL4-scwrl costs 74172.8 real_cost = 773.651 gtg_AL3-scwrl costs 48954.3 real_cost = 769.618 gtg_AL2-scwrl costs 50768.5 real_cost = 758.469 gtg_AL1-scwrl costs 178027 real_cost = 785.496 forecast-s_AL5-scwrl costs 38396.4 real_cost = 849.31 forecast-s_AL4-scwrl costs 99702.2 real_cost = 721.947 forecast-s_AL3-scwrl costs 67160.9 real_cost = 732.06 forecast-s_AL2-scwrl costs 141882 real_cost = 776.805 forecast-s_AL1-scwrl costs 40847.7 real_cost = 772.429 beautshotbase_TS1-scwrl costs 1134.06 real_cost = 591.55 beautshot_TS1-scwrl costs 400.912 real_cost = 446.173 Zhang-Server_TS5-scwrl costs 357.883 real_cost = 428.966 Zhang-Server_TS4-scwrl costs 406.465 real_cost = 431.638 Zhang-Server_TS3-scwrl costs 405.607 real_cost = 421.142 Zhang-Server_TS2-scwrl costs 387.325 real_cost = 445.8 Zhang-Server_TS1-scwrl costs 387.873 real_cost = 421.288 UNI-EID_sfst_AL2-scwrl costs 55108.7 real_cost = 791.192 UNI-EID_sfst_AL1-scwrl costs 37065.7 real_cost = 775.603 UNI-EID_expm_TS1-scwrl costs 17013.6 real_cost = 723.598 UNI-EID_bnmx_TS2-scwrl costs 37062.2 real_cost = 775.817 UNI-EID_bnmx_TS1-scwrl costs 55351.3 real_cost = 789.489 SPARKS2_TS5-scwrl costs 367.813 real_cost = 410.342 SPARKS2_TS4-scwrl costs 405.884 real_cost = 439.883 SPARKS2_TS3-scwrl costs 384.364 real_cost = 421.225 SPARKS2_TS2-scwrl costs 403.862 real_cost = 410.934 SPARKS2_TS1-scwrl costs 358.903 real_cost = 419.169 SP4_TS5-scwrl costs 353.365 real_cost = 430.25 SP4_TS4-scwrl costs 373.545 real_cost = 431.501 SP4_TS3-scwrl costs 332.452 real_cost = 422.986 SP4_TS2-scwrl costs 408.173 real_cost = 413.94 SP4_TS1-scwrl costs 361.302 real_cost = 422.53 SP3_TS5-scwrl costs 370.114 real_cost = 432.766 SP3_TS4-scwrl costs 329.596 real_cost = 432.747 SP3_TS3-scwrl costs 338.847 real_cost = 422.963 SP3_TS2-scwrl costs 408.173 real_cost = 413.94 SP3_TS1-scwrl costs 382.454 real_cost = 422.643 SAM_T06_server_TS5-scwrl costs 1417.65 real_cost = 655.53 SAM_T06_server_TS4-scwrl costs 1162.85 real_cost = 596.763 SAM_T06_server_TS3-scwrl costs 1391.06 real_cost = 650.518 SAM_T06_server_TS2-scwrl costs 1143.97 real_cost = 588.969 SAM_T06_server_TS1-scwrl costs 273.418 real_cost = 410.873 SAM-T99_AL5-scwrl costs 12479.1 real_cost = 822.9 SAM-T99_AL4-scwrl costs 24487.5 real_cost = 824.269 SAM-T99_AL3-scwrl costs 24973.6 real_cost = 822.507 SAM-T99_AL2-scwrl costs 36455.7 real_cost = 780.234 SAM-T99_AL1-scwrl costs 56631.6 real_cost = 784.388 SAM-T02_AL5-scwrl costs 25547.3 real_cost = 783.53 SAM-T02_AL4-scwrl costs 19716 real_cost = 806.146 SAM-T02_AL3-scwrl costs 102341 real_cost = 793.459 SAM-T02_AL2-scwrl costs 66352.9 real_cost = 789.668 SAM-T02_AL1-scwrl costs 43616.8 real_cost = 748.692 ROKKY_TS1-scwrl costs 407.449 real_cost = 414.909 ROBETTA_TS5-scwrl costs 290.497 real_cost = 418.015 ROBETTA_TS4-scwrl costs 291.047 real_cost = 406.95 ROBETTA_TS3-scwrl costs 286.432 real_cost = 410.364 ROBETTA_TS2-scwrl costs 291.732 real_cost = 414.275 ROBETTA_TS1-scwrl costs 288.928 real_cost = 413.851 RAPTOR_TS5-scwrl costs 375.826 real_cost = 417.372 RAPTOR_TS4-scwrl costs 394.711 real_cost = 413.003 RAPTOR_TS3-scwrl costs 381.709 real_cost = 421.608 RAPTOR_TS2-scwrl costs 359.781 real_cost = 431.265 RAPTOR_TS1-scwrl costs 399.674 real_cost = 422.902 RAPTORESS_TS5-scwrl costs 350.246 real_cost = 429.886 RAPTORESS_TS4-scwrl costs 358.842 real_cost = 443.39 RAPTORESS_TS3-scwrl costs 348.538 real_cost = 444.738 RAPTORESS_TS2-scwrl costs 412.818 real_cost = 453.209 RAPTORESS_TS1-scwrl costs 350.941 real_cost = 441.814 RAPTOR-ACE_TS5-scwrl costs 341.59 real_cost = 435.259 RAPTOR-ACE_TS4-scwrl costs 376.963 real_cost = 414.22 RAPTOR-ACE_TS3-scwrl costs 772.064 real_cost = 436.476 RAPTOR-ACE_TS2-scwrl costs 370.973 real_cost = 419.757 RAPTOR-ACE_TS1-scwrl costs 375.116 real_cost = 422.806 Pmodeller6_TS5-scwrl costs 368.279 real_cost = 428.706 Pmodeller6_TS4-scwrl costs 374.384 real_cost = 427.136 Pmodeller6_TS3-scwrl costs 436.482 real_cost = 435.461 Pmodeller6_TS2-scwrl costs 402.28 real_cost = 434.254 Pmodeller6_TS1-scwrl costs 402.28 real_cost = 434.254 Phyre-2_TS5-scwrl costs 375.64 real_cost = 426.481 Phyre-2_TS4-scwrl costs 382.987 real_cost = 429.652 Phyre-2_TS3-scwrl costs 374.282 real_cost = 427.479 Phyre-2_TS2-scwrl costs 515.446 real_cost = 453.751 Phyre-2_TS1-scwrl costs 447.172 real_cost = 440.895 Phyre-1_TS1-scwrl costs 1231.57 real_cost = 605.205 Pcons6_TS5-scwrl costs 389.312 real_cost = 432.37 Pcons6_TS4-scwrl costs 489.98 real_cost = 461.074 Pcons6_TS3-scwrl costs 360.999 real_cost = 425.851 Pcons6_TS2-scwrl costs 402.28 real_cost = 434.254 Pcons6_TS1-scwrl costs 368.279 real_cost = 428.706 PROTINFO_TS5-scwrl costs 351.922 real_cost = 424.1 PROTINFO_TS4-scwrl costs 578.09 real_cost = 472.155 PROTINFO_TS3-scwrl costs 363.611 real_cost = 413.736 PROTINFO_TS2-scwrl costs 968.528 real_cost = 558.515 PROTINFO_TS1-scwrl costs 547.209 real_cost = 468.614 PROTINFO-AB_TS5-scwrl costs 357.66 real_cost = 422.536 PROTINFO-AB_TS4-scwrl costs 365.471 real_cost = 431.548 PROTINFO-AB_TS3-scwrl costs 356.321 real_cost = 417.576 PROTINFO-AB_TS2-scwrl costs 363.029 real_cost = 423.808 PROTINFO-AB_TS1-scwrl costs 363.859 real_cost = 432.699 POMYSL_TS5-scwrl costs 2928.48 real_cost = 841.966 POMYSL_TS4-scwrl costs 2978.29 real_cost = 840.264 POMYSL_TS3-scwrl costs 538.207 real_cost = 464.556 POMYSL_TS2-scwrl costs 527.094 real_cost = 436.956 POMYSL_TS1-scwrl costs 724.915 real_cost = 504.16 NN_PUT_lab_TS1-scwrl costs 29566.3 real_cost = 668.697 MetaTasser_TS5-scwrl costs 517.643 real_cost = 437.855 MetaTasser_TS4-scwrl costs 612.821 real_cost = 435.495 MetaTasser_TS3-scwrl costs 539.15 real_cost = 429.391 MetaTasser_TS2-scwrl costs 542.142 real_cost = 443.671 MetaTasser_TS1-scwrl costs 565.865 real_cost = 424.018 Ma-OPUS-server_TS5-scwrl costs 366.786 real_cost = 427.999 Ma-OPUS-server_TS4-scwrl costs 350.205 real_cost = 430.354 Ma-OPUS-server_TS3-scwrl costs 319.889 real_cost = 427.307 Ma-OPUS-server_TS2-scwrl costs 334.82 real_cost = 418.246 Ma-OPUS-server_TS1-scwrl costs 352.386 real_cost = 427.635 Ma-OPUS-server2_TS5-scwrl costs 364.648 real_cost = 447.971 Ma-OPUS-server2_TS4-scwrl costs 349.482 real_cost = 441.396 Ma-OPUS-server2_TS3-scwrl costs 339.805 real_cost = 431.402 Ma-OPUS-server2_TS2-scwrl costs 353.343 real_cost = 416.257 Ma-OPUS-server2_TS1-scwrl costs 347.859 real_cost = 430.799 LOOPP_TS5-scwrl costs 1008.32 real_cost = 524.963 LOOPP_TS4-scwrl costs 930.678 real_cost = 524.976 LOOPP_TS3-scwrl costs 717.232 real_cost = 505.06 LOOPP_TS2-scwrl costs 981.265 real_cost = 524.197 LOOPP_TS1-scwrl costs 1031.34 real_cost = 560.823 Huber-Torda-Server_TS5-scwrl costs 10219.5 real_cost = 764.669 Huber-Torda-Server_TS4-scwrl costs 35335.1 real_cost = 687.928 Huber-Torda-Server_TS3-scwrl costs 12717 real_cost = 774.047 Huber-Torda-Server_TS2-scwrl costs 16142.1 real_cost = 797.552 Huber-Torda-Server_TS1-scwrl costs 14946.4 real_cost = 710.365 HHpred3_TS1-scwrl costs 399.306 real_cost = 406.485 HHpred2_TS1-scwrl costs 399.306 real_cost = 406.485 HHpred1_TS1-scwrl costs 399.306 real_cost = 406.485 GeneSilicoMetaServer_TS5-scwrl costs 951.833 real_cost = 548.099 GeneSilicoMetaServer_TS4-scwrl costs 1127.86 real_cost = 569.243 GeneSilicoMetaServer_TS3-scwrl costs 955.613 real_cost = 540.797 GeneSilicoMetaServer_TS1-scwrl costs 953.22 real_cost = 539.486 FUNCTION_TS5-scwrl costs 379.021 real_cost = 430.047 FUNCTION_TS4-scwrl costs 652.919 real_cost = 489.625 FUNCTION_TS3-scwrl costs 585.873 real_cost = 463.718 FUNCTION_TS2-scwrl costs 372.225 real_cost = 413.151 FUNCTION_TS1-scwrl costs 396.212 real_cost = 414.913 FUGUE_AL5-scwrl costs 36404.1 real_cost = 768.07 FUGUE_AL4-scwrl costs 75352.3 real_cost = 705.115 FUGUE_AL3-scwrl costs 122756 real_cost = 795.348 FUGUE_AL2-scwrl costs 38061.3 real_cost = 719.043 FUGUE_AL1-scwrl costs 46554.9 real_cost = 758.319 FUGMOD_TS5-scwrl costs 748.755 real_cost = 521.439 FUGMOD_TS4-scwrl costs 468.499 real_cost = 461.543 FUGMOD_TS3-scwrl costs 1285.26 real_cost = 613.518 FUGMOD_TS2-scwrl costs 423.078 real_cost = 431.512 FUGMOD_TS1-scwrl costs 997.143 real_cost = 553.961 FPSOLVER-SERVER_TS5-scwrl costs 343.971 real_cost = 417.48 FPSOLVER-SERVER_TS4-scwrl costs 340.894 real_cost = 437.423 FPSOLVER-SERVER_TS3-scwrl costs 337.966 real_cost = 423.95 FPSOLVER-SERVER_TS2-scwrl costs 341.273 real_cost = 445.025 FPSOLVER-SERVER_TS1-scwrl costs 338.897 real_cost = 422.76 FORTE2_AL5-scwrl costs 131156 real_cost = 723.344 FORTE2_AL4-scwrl costs 82822.5 real_cost = 740.631 FORTE2_AL3-scwrl costs 47730 real_cost = 763.987 FORTE2_AL2-scwrl costs 176518 real_cost = 738.57 FORTE2_AL1-scwrl costs 150351 real_cost = 735.497 FORTE1_AL5-scwrl costs 33289 real_cost = 769.199 FORTE1_AL4-scwrl costs 62469.8 real_cost = 734.546 FORTE1_AL3-scwrl costs 85424.7 real_cost = 739.329 FORTE1_AL2-scwrl costs 43391.7 real_cost = 758.962 FORTE1_AL1-scwrl costs 145991 real_cost = 720.335 FOLDpro_TS5-scwrl costs 341.158 real_cost = 410.946 FOLDpro_TS4-scwrl costs 350.389 real_cost = 431.18 FOLDpro_TS3-scwrl costs 449.284 real_cost = 445.401 FOLDpro_TS2-scwrl costs 401.53 real_cost = 426.229 FOLDpro_TS1-scwrl costs 357.073 real_cost = 427.237 FAMS_TS5-scwrl costs 1163.99 real_cost = 576.506 FAMS_TS4-scwrl costs 1163.99 real_cost = 576.506 FAMS_TS3-scwrl costs 1083.74 real_cost = 568.605 FAMS_TS2-scwrl costs 1240.31 real_cost = 591.284 FAMS_TS1-scwrl costs 587.242 real_cost = 444.445 FAMSD_TS5-scwrl costs 1163.99 real_cost = 576.506 FAMSD_TS4-scwrl costs 1249.15 real_cost = 599.068 FAMSD_TS3-scwrl costs 1161.21 real_cost = 575.68 FAMSD_TS2-scwrl costs 1248.09 real_cost = 592.079 FAMSD_TS1-scwrl costs 496.518 real_cost = 462.297 Distill_TS5-scwrl costs 3475.4 real_cost = 793.028 Distill_TS4-scwrl costs 3472.23 real_cost = 794.064 Distill_TS3-scwrl costs 3476.28 real_cost = 792.318 Distill_TS2-scwrl costs 3472.77 real_cost = 791.355 Distill_TS1-scwrl costs 3472.52 real_cost = 794.573 CaspIta-FOX_TS5-scwrl costs 1252.34 real_cost = 569.788 CaspIta-FOX_TS4-scwrl costs 1130.84 real_cost = 593.394 CaspIta-FOX_TS3-scwrl costs 1482 real_cost = 579.525 CaspIta-FOX_TS2-scwrl costs 849.53 real_cost = 522.845 CaspIta-FOX_TS1-scwrl costs 1209.2 real_cost = 607.621 CPHmodels_TS1-scwrl costs 1792.81 real_cost = 692.943 CIRCLE_TS5-scwrl costs 1163.99 real_cost = 576.506 CIRCLE_TS4-scwrl costs 1035.19 real_cost = 560.457 CIRCLE_TS3-scwrl costs 1037.21 real_cost = 561.611 CIRCLE_TS2-scwrl costs 1083.74 real_cost = 568.605 CIRCLE_TS1-scwrl costs 587.242 real_cost = 444.445 Bilab-ENABLE_TS5-scwrl costs 473.059 real_cost = 426.792 Bilab-ENABLE_TS4-scwrl costs 479.482 real_cost = 427.861 Bilab-ENABLE_TS3-scwrl costs 473.708 real_cost = 427.342 Bilab-ENABLE_TS2-scwrl costs 476.468 real_cost = 426.712 Bilab-ENABLE_TS1-scwrl costs 464.142 real_cost = 425.25 BayesHH_TS1-scwrl costs 402.454 real_cost = 408.399 ABIpro_TS5-scwrl costs 416.02 real_cost = 429.309 ABIpro_TS4-scwrl costs 386.168 real_cost = 427.284 ABIpro_TS3-scwrl costs 404.923 real_cost = 426.47 ABIpro_TS2-scwrl costs 437.811 real_cost = 424.801 ABIpro_TS1-scwrl costs 402.156 real_cost = 417.857 3Dpro_TS5-scwrl costs 358.228 real_cost = 424.412 3Dpro_TS4-scwrl costs 338.747 real_cost = 421.09 3Dpro_TS3-scwrl costs 431.079 real_cost = 445.657 3Dpro_TS2-scwrl costs 390.33 real_cost = 433.742 3Dpro_TS1-scwrl costs 376.422 real_cost = 425.898 3D-JIGSAW_TS2-scwrl costs 1628.2 real_cost = 664.866 3D-JIGSAW_TS1-scwrl costs 1439.13 real_cost = 643.467 3D-JIGSAW_RECOM_TS5-scwrl costs 1517.78 real_cost = 658.31 3D-JIGSAW_RECOM_TS4-scwrl costs 1437.68 real_cost = 642.326 3D-JIGSAW_RECOM_TS3-scwrl costs 1442.36 real_cost = 642.546 3D-JIGSAW_RECOM_TS2-scwrl costs 1517.48 real_cost = 657.896 3D-JIGSAW_RECOM_TS1-scwrl costs 1560 real_cost = 649.845 3D-JIGSAW_POPULUS_TS5-scwrl costs 1419.69 real_cost = 627.72 3D-JIGSAW_POPULUS_TS4-scwrl costs 1418.97 real_cost = 629.866 3D-JIGSAW_POPULUS_TS3-scwrl costs 1422.07 real_cost = 637.264 3D-JIGSAW_POPULUS_TS2-scwrl costs 1421.88 real_cost = 629.816 3D-JIGSAW_POPULUS_TS1-scwrl costs 1462.57 real_cost = 626.078 chimera-try3andtry5combined.pdb.gz costs 508.186 real_cost = 397.216 chimera-try3andtry5.pdb.gz costs 973.382 real_cost = 520.605 chimera-try3andtry4combined.pdb.gz costs 365.737 real_cost = 407.863 chimera-try3andtry4.pdb.gz costs 973.382 real_cost = 520.605 chimera-try3andtry2combined.pdb.gz costs 310.658 real_cost = 407.034 chimera-try3andtry2.pdb.gz costs 973.382 real_cost = 520.605 chimera-models.try3andtry8.pdb.gz costs 312.537 real_cost = 410.029 chimera-models.pdb.gz costs 973.382 real_cost = 520.605 T0320.try9-opt2.repack-nonPC.pdb.gz costs 265.557 real_cost = 411.42 T0320.try9-opt2.pdb.gz costs 262.591 real_cost = 411.18 T0320.try9-opt2.gromacs0.pdb.gz costs 284.399 real_cost = 409.318 T0320.try9-opt1.pdb.gz costs 268.924 real_cost = 409.616 T0320.try9-opt1-scwrl.pdb.gz costs 281.687 real_cost = 409.494 T0320.try8-opt2.repack-nonPC.pdb.gz costs 261.867 real_cost = 412.821 T0320.try8-opt2.pdb.gz costs 259.902 real_cost = 412.522 T0320.try8-opt2.gromacs0.pdb.gz costs 283.34 real_cost = 411.617 T0320.try8-opt1.pdb.gz costs 262.47 real_cost = 412.361 T0320.try8-opt1-scwrl.pdb.gz costs 273.649 real_cost = 411.837 T0320.try7-opt2.repack-nonPC.pdb.gz costs 269.843 real_cost = 402.474 T0320.try7-opt2.pdb.gz costs 268.436 real_cost = 402.903 T0320.try7-opt2.gromacs0.pdb.gz costs 286.806 real_cost = 404.591 T0320.try7-opt1.pdb.gz costs 278.1 real_cost = 406.349 T0320.try7-opt1-scwrl.pdb.gz costs 285.003 real_cost = 403.53 T0320.try6-opt2.repack-nonPC.pdb.gz costs 272.559 real_cost = 402.539 T0320.try6-opt2.pdb.gz costs 269.57 real_cost = 402.772 T0320.try6-opt2.gromacs0.pdb.gz costs 289.609 real_cost = 402.143 T0320.try6-opt1.pdb.gz costs 274.559 real_cost = 403.196 T0320.try6-opt1-scwrl.pdb.gz costs 283.443 real_cost = 401.531 T0320.try5-opt2.repack-nonPC.pdb.gz costs 294.665 real_cost = 400.427 T0320.try5-opt2.pdb.gz costs 291.543 real_cost = 401.251 T0320.try5-opt2.gromacs0.pdb.gz costs 299.258 real_cost = 400.282 T0320.try5-opt1.pdb.gz costs 298.631 real_cost = 398.799 T0320.try5-opt1-scwrl.pdb.gz costs 300.374 real_cost = 398.801 T0320.try4-opt2.repack-nonPC.pdb.gz costs 266.131 real_cost = 409.4 T0320.try4-opt2.pdb.gz costs 265.31 real_cost = 409.759 T0320.try4-opt2.gromacs0.pdb.gz costs 280.687 real_cost = 409.063 T0320.try4-opt1.pdb.gz costs 271.743 real_cost = 407.751 T0320.try4-opt1-scwrl.pdb.gz costs 282.891 real_cost = 407.854 T0320.try3-opt2.repack-nonPC.pdb.gz costs 280.438 real_cost = 406.342 T0320.try3-opt2.repack-1stdomain.pdb.gz costs 973.382 real_cost = 520.605 T0320.try3-opt2.pdb.gz costs 281.92 real_cost = 406.561 T0320.try3-opt2.gromacs0.pdb.gz costs 293.026 real_cost = 406.423 T0320.try3-opt1.pdb.gz costs 296.753 real_cost = 403.653 T0320.try3-opt1-scwrl.pdb.gz costs 299.143 real_cost = 403.465 T0320.try2-opt2.repack-nonPC.pdb.gz costs 332.637 real_cost = 411.187 T0320.try2-opt2.pdb.gz costs 333.055 real_cost = 408.968 T0320.try2-opt2.gromacs0.pdb.gz costs 352.416 real_cost = 414.657 T0320.try2-opt1.pdb.gz costs 349.024 real_cost = 410.293 T0320.try2-opt1-scwrl.pdb.gz costs 349.585 real_cost = 410.174 T0320.try12-opt2.repack-nonPC.pdb.gz costs 278.427 real_cost = 403.466 T0320.try12-opt2.pdb.gz costs 277.214 real_cost = 405.22 T0320.try12-opt2.gromacs0.pdb.gz costs 297.116 real_cost = 405.65 T0320.try12-opt1.pdb.gz costs 283.84 real_cost = 404.204 T0320.try12-opt1-scwrl.pdb.gz costs 288.795 real_cost = 403.181 T0320.try11-opt2.repack-nonPC.pdb.gz costs 270.026 real_cost = 409.036 T0320.try11-opt2.pdb.gz costs 267.865 real_cost = 409.458 T0320.try11-opt2.gromacs0.pdb.gz costs 289.503 real_cost = 408.185 T0320.try11-opt1.pdb.gz costs 275.192 real_cost = 409.13 T0320.try11-opt1-scwrl.pdb.gz costs 286.569 real_cost = 407.075 T0320.try10-opt2.repack-nonPC.pdb.gz costs 286.206 real_cost = 422.928 T0320.try10-opt2.pdb.gz costs 283.569 real_cost = 423.056 T0320.try10-opt2.gromacs0.pdb.gz costs 294.822 real_cost = 421.415 T0320.try10-opt1.pdb.gz costs 291.986 real_cost = 423.109 T0320.try10-opt1-scwrl.pdb.gz costs 295.225 real_cost = 422.958 T0320.try1-opt2.repack-nonPC.pdb.gz costs 288.435 real_cost = 423.665 T0320.try1-opt2.pdb.gz costs 286.848 real_cost = 423.928 T0320.try1-opt2.gromacs0.pdb.gz costs 308.28 real_cost = 422.309 T0320.try1-opt1.pdb.gz costs 296.152 real_cost = 425.541 T0320.try1-opt1-scwrl.pdb.gz costs 299.862 real_cost = 425.366 ../model5.ts-submitted costs 268.409 real_cost = 402.897 ../model4.ts-submitted costs 286.85 real_cost = 424.237 ../model3.ts-submitted costs 280.66 real_cost = 406.556 ../model2.ts-submitted costs 267.671 real_cost = 409.958 ../model1.ts-submitted costs 262.767 real_cost = 412.366 align5 costs 1754.05 real_cost = 656.055 align4 costs 4837.85 real_cost = 639.221 align3 costs 4758.22 real_cost = 615.901 align2 costs 2508.47 real_cost = 602.724 align1 costs 1601.04 real_cost = 611.213 T0320.try1-opt2.pdb costs 286.848 real_cost = 423.928 model5-scwrl costs 268.409 real_cost = 402.897 model4-scwrl costs 286.85 real_cost = 424.237 model3-scwrl costs 280.66 real_cost = 406.556 model2-scwrl costs 267.671 real_cost = 409.958 model1-scwrl costs 262.568 real_cost = 412.658 T0320 costs 454.834 real_cost = -895 # command:CPU_time= 880.371 sec, elapsed time= 1137.76 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0320'