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Sequence Alignment and Modeling Software System
http://www.soe.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0320 FAD1, Saccharomyces cerevisiae, 306 res
    • gi|75256958|ref|ZP_00728534.1|_6:293 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli E22]
    • gi|75210959|ref|ZP_00711083.1| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli B171]
    • gi|75187480|ref|ZP_00700747.1| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli E24377A]
    • gi|75241857|ref|ZP_00725676.1|_6:293 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli F11]
    • gi|75827813|ref|ZP_00757248.1|_6:293 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio cholerae O395]
    • gi|75820184|ref|ZP_00750238.1| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio cholerae V51]
    • gi|31076657|sp|Q9KP19|CYSD_VIBCH_6:293 Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) [Taxonomy]
    • gi|75830510|ref|ZP_00759786.1| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio cholerae MO10]
    • gi|75196727|ref|ZP_00706797.1|_6:293 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli HS]
    • gi|75815992|ref|ZP_00746477.1|_6:293 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio cholerae V52]
    • gi|88191953|pdb|1ZUN|A_22:316 Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase Heterodimer From Pseudomonas Syringae [Taxonomy]
    • gi|75176384|ref|ZP_00696528.1|_6:293 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Shigella boydii BS512]
    • gi|1399349|gb|AAC49573.1|_62:371 3'-phosphoadenosine 5'-phosphosulfate reductase [Taxonomy]
    • gi|75239631|ref|ZP_00723598.1|_1:248 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli F11]
    • gi|75511661|ref|ZP_00734308.1|_1:254 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli 53638]
    • gi|75179245|ref|ZP_00699263.1|_1:254 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Shigella boydii BS512]
    • gi|75209213|ref|ZP_00709460.1|_1:254 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli B171]
    • gi|32129473|sp|Q9PD79|CYSD_XYLFA_8:290 Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) [Taxonomy]
    • gi|48856063|ref|ZP_00310221.1|_5:270 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Cytophaga hutchinsonii]
    • gi|68539939|ref|ZP_00579706.1|_247:470 GMP synthase, C-terminal:GMP synthase, N-terminal [Sphingopyxis alaskensis RB2256]
    • gi|62424460|ref|ZP_00379606.1|_20:270 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Brevibacterium linens BL2]
    • gi|128485|sp|P28603|NODP_AZOBR_8:287 Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) (Nodulation protein P) [Taxonomy]
    • gi|142424|gb|AAA22185.1| nodP [Taxonomy]
    • gi|39930929|sp|Q7MHA7|CYSH_VIBVY_21:249 Phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) [Taxonomy]
    • gi|75822239|ref|ZP_00751904.1|_18:248 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio cholerae RC385]
    • gi|75817915|ref|ZP_00748169.1|_18:248 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio cholerae V51]
    • gi|75854355|ref|ZP_00762053.1|_21:249 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio sp. Ex25]
    • gi|6323873|ref|NP_013944.1|_167:407 GMP synthase, an enzyme that catalyzes the second step in the biosynthesis of GMP from inosine 5'-phosphate (IMP); transcription is not subject to regulation by guanine but is negatively regulated by nutrient starvation; Gua1p [Saccharomyces cerevisiae]
    • gi|854469|emb|CAA89932.1| Gua1p [Saccharomyces cerevisiae]
    • gi|1708073|sp|P38625|GUAA_YEAST GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase) (GMP synthetase) [Taxonomy]
    • gi|54036936|sp|P65671|CYSD_MYCBO_16:265 Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) [Taxonomy]
    • gi|54041029|sp|P65670|CYSD_MYCTU Sulfate adenylyltransferase subunit 2 (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase small subunit) [Taxonomy]
    • gi|83585586|ref|ZP_00924229.1|_9:244 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli 101-1]
    • gi|145682|gb|AAA23652.1| 3'-phosphoadenosine-5'-phosphosulfate sulfotransferase [Taxonomy]
    • gi|75235637|ref|ZP_00719811.1|_9:244 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli E110019]
    • gi|75230027|ref|ZP_00716537.1| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli B7A]
    • gi|75187490|ref|ZP_00700757.1| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli E24377A]
    • gi|67658273|ref|ZP_00455646.1|_32:233 PP-loop [Burkholderia cenocepacia AU 1054]
    • gi|67094114|gb|EAM11650.1| PP-loop [Burkholderia cenocepacia AU 1054]
    • gi|75256969|ref|ZP_00728545.1|_9:244 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli E22]
    • gi|75210972|ref|ZP_00711096.1| COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Escherichia coli B171]
    • gi|75821547|ref|ZP_00751401.1|_2:252 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Vibrio cholerae RC385]
    • gi|7387907|sp|P56859|MET16_EMENI_40:282 Phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) [Taxonomy]
    • gi|78686311|ref|ZP_00851080.1|_11:265 Phosphoadenosine phosphosulfate reductase CysH-type:Phosphoadenosine phosphosulfate reductase thioredoxin [Shewanella sp. ANA-3]
    • gi|78505936|gb|EAP19460.1| Phosphoadenosine phosphosulfate reductase CysH-type:Phosphoadenosine phosphosulfate reductase thioredoxin [Shewanella sp. ANA-3]
    • gi|82498504|ref|ZP_00883997.1|_11:265 Phosphoadenosine phosphosulfate reductase CysH-type:Phosphoadenosine phosphosulfate reductase thioredoxin [Shewanella sp. MR-4]
    • gi|82403499|gb|EAP44227.1| Phosphoadenosine phosphosulfate reductase CysH-type:Phosphoadenosine phosphosulfate reductase thioredoxin [Shewanella sp. MR-4]
    • gi|78689785|ref|ZP_00854442.1|_11:265 Phosphoadenosine phosphosulfate reductase CysH-type:Phosphoadenosine phosphosulfate reductase thioredoxin [Shewanella sp. MR-7]
    • gi|78510814|gb|EAP24179.1| Phosphoadenosine phosphosulfate reductase CysH-type:Phosphoadenosine phosphosulfate reductase thioredoxin [Shewanella sp. MR-7]
    • gi|62424461|ref|ZP_00379607.1|_49:257 COG0175: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Brevibacterium linens BL2]
    • gi|50593215|ref|NP_011304.2|_14:283 Protein with a role in urmylation and in invasive and pseudohyphal growth; inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts; Ncs6p [Saccharomyces cerevisiae]
    • gi|6325425|ref|NP_015493.1|_12:249 3'-phosphoadenylsulfate reductase, reduces 3'-phosphoadenylyl sulfate to adenosine-3',5'-bisphosphate and free sulfite using reduced thioredoxin as cosubstrate, involved in sulfate assimilation and methionine metabolism; Met16p [Saccharomyces cerevisiae]
    • gi|51013923|gb|AAT93255.1| YPR167C [Saccharomyces cerevisiae]
    • gi|2507069|sp|P18408|MET16_YEAST Phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) [Taxonomy]
    • gi|786292|gb|AAB68154.1| 3'-phosphoadenylylsulfate reductase (PAPS reductase, Swiss Prot. accession number P18408) [Taxonomy]
    • gi|77635911|ref|ZP_00797990.1|_27:247 COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Yersinia pestis Angola]
    • gi|2342534|emb|CAA04617.1|_3:173 PAPS reductase [Rhizobium tropici]
    • gi|7387609|sp|O33579|CYSH_RHITR Phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) [Taxonomy]