# List of top-scoring protein chains for T0320.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1shyA 234 6.90e-01 b.47.1.2 105564 1si5H 240 6.98e-01 2b5xA 148 3.98e+00 1m4uA 206 5.99e+00 g.17.1.7 78625 1oqvA 192 8.07e+00 d.24.1.2 87320 1flcB 175 1.02e+01 1flcB h.3.1.1 45716 1xmkA 79 1.05e+01 1apq 53 1.40e+01 1apq g.3.11.1 44324 1uswA 260 1.43e+01 c.69.1.17 99895 2bjhA 260 1.43e+01 1uwcA 261 1.44e+01 c.69.1.17 100101 1ve1A 304 1.48e+01 1mkmA 249 1.65e+01 a.4.5.33,d.110.2.2 79242,79243 1i6pA 220 1.67e+01 1ddzA c.53.2.1 61848 2bkaA 242 2.62e+01 2fmuA 248 2.77e+01 1k4nA 192 2.82e+01 d.32.1.5 72059 1wxtA 68 2.85e+01 1imuA 107 3.04e+01 d.204.1.1 66218 1q5qH 235 3.12e+01 d.153.1.4 95911 1ls5A 328 3.26e+01 b.50.1.2 74240 2por 301 3.51e+01 2por f.4.3.1 43759 1q5rH 294 3.79e+01 d.153.1.4 95925 1jcaA 21 3.81e+01 1twyA 290 3.97e+01 1lkqA 21 4.09e+01 1j73A 21 4.20e+01 1iogA 21 4.25e+01 2gi3A 476 4.29e+01 1k3mA 21 4.32e+01 1bxnI 139 4.38e+01 1rboC d.73.1.1 39666 1q4vA 21 4.40e+01 1msoA 21 4.40e+01 1xw7A 21 4.42e+01 1evtC 225 4.44e+01 1cvsC b.1.1.4,b.1.1.4 21730,21731 1rm6B 324 4.57e+01 1ztdA 133 4.57e+01 1rweA 21 4.93e+01 2f2bA 246 5.23e+01 1zx4A 192 5.36e+01 2c4nA 250 5.72e+01 1oh2Q 413 5.92e+01 f.4.3.2 87007 1u2fA 90 6.15e+01 1u2fA d.58.7.1 39168 1m55A 197 6.18e+01 d.89.1.3 74469 1pidA 21 6.49e+01 1uwkA 557 6.66e+01 e.51.1.1 108065 2bn3A 21 6.76e+01 1d02A 202 6.77e+01 1d02A c.52.1.8 33313 1gv4A 528 6.88e+01 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2fy6A 143 6.90e+01 1r9lA 309 7.09e+01 c.94.1.1 97262 2cz4A 119 7.14e+01 1mi2A 73 7.14e+01 1tvxA d.9.1.1 37455 1m6iA 493 7.14e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1a0tP 413 7.27e+01 1a0tP f.4.3.2 43794 1sojI 420 7.68e+01 a.211.1.2 98950 1ctj 89 7.74e+01 1ctj a.3.1.1 15798 1u3oA 82 7.75e+01 1eu8A 409 7.86e+01 1eu8A c.94.1.1 59502 1rvkA 382 7.94e+01 c.1.11.2,d.54.1.1 97928,97929 1x3dA 118 8.00e+01 1op9A 121 8.12e+01 b.1.1.1 93398 1dxhA 335 8.22e+01 1othA c.78.1.1,c.78.1.1 35202,35203 1kmaA 55 8.42e+01 g.68.1.1 72743 1w8xP 117 8.43e+01 1so2A 420 8.43e+01 a.211.1.2 98936 1ortA 335 8.47e+01 1othA c.78.1.1,c.78.1.1 35204,35205 1h1dA 221 8.75e+01 c.66.1.1 83452 2cqkA 101 8.88e+01 1md6A 154 8.99e+01 b.42.1.2 91242