# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1flcB 175 8.79e-01 1flcB h.3.1.1 45716 1tbrR 103 3.06e+00 1tbrR g.68.1.1,g.68.1.1 44707,44708 1kn6A 90 5.04e+00 d.58.3.3 72770 1imuA 107 7.70e+00 d.204.1.1 66218 1m4uA 206 8.85e+00 g.17.1.7 78625 1v7pB 128 9.30e+00 d.169.1.1 108407 1ukmB 128 9.44e+00 d.169.1.1 99500 2g7uA 257 9.59e+00 2bh1X 96 1.05e+01 1lu4A 136 1.57e+01 c.47.1.10 91124 1yozA 116 1.62e+01 2fy6A 143 1.68e+01 1voqa 90 1.90e+01 1ve1A 304 1.93e+01 1tqgA 105 1.94e+01 a.24.10.3 107224 1odfA 290 2.14e+01 c.37.1.6 92782 1b59A 370 2.27e+01 1bn5 a.4.5.25,d.127.1.1 16225,41162 1f60A 458 2.31e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1l4sA 112 2.43e+01 d.204.1.1 77693 1ng0A 253 2.55e+01 b.121.4.7 80475 1nepA 130 2.59e+01 b.1.18.7 80440 1xszA 356 2.76e+01 1hu3A 260 2.88e+01 1hu3A a.118.1.14 19137 1dr9A 201 2.98e+01 1dr9A b.1.1.1,b.1.1.3 19762,21684 1zc1A 208 3.11e+01 1i3uA 127 3.17e+01 1gc1H b.1.1.1 61636 1m1fA 110 3.17e+01 b.34.6.2 78401 1v1rA 400 3.19e+01 c.36.1.11 108272 1m55A 197 3.26e+01 d.89.1.3 74469 1x7yA 400 3.36e+01 1ssn 136 3.46e+01 2sak d.15.5.1 37720 2azwA 148 3.61e+01 2bfdA 400 3.69e+01 1olsA 400 3.82e+01 c.36.1.11 93331 2bmoA 447 3.86e+01 1in0A 163 3.88e+01 d.58.49.1,d.58.49.1 83694,83695 1o7nA 449 4.17e+01 b.33.1.2,d.129.3.3 81162,81163 1ucrA 78 4.19e+01 a.4.5.45 99188 1ndoA 449 4.27e+01 1ndoA b.33.1.2,d.129.3.3 24444,41323 1ah9 71 4.31e+01 1ah9 b.40.4.5 25330 1k4zA 159 4.43e+01 b.80.5.1 72070 1uwcA 261 4.46e+01 c.69.1.17 100101 1az3A 244 4.51e+01 1rvaA c.52.1.2 33276 1e5gA 120 4.59e+01 1e5gA g.18.1.1,g.18.1.1 44843,44844 1jcaA 21 4.70e+01 2hmqA 113 4.74e+01 2mhr a.24.4.1 16568 1bn5 478 4.81e+01 1bn5 a.4.5.25,d.127.1.1 16224,41161 2bkaA 242 5.00e+01 2rveA 244 5.01e+01 1rvaA c.52.1.2 33283 1jjzA 29 5.07e+01 g.3.3.1 71699 1vjyA 303 5.16e+01 d.144.1.7 108633 1lkqA 21 5.19e+01 1xmkA 79 5.20e+01 2bbkL 125 5.30e+01 2bbkL g.21.1.1 44882 1iogA 21 5.36e+01 1fg9C 245 5.37e+01 1jrhI b.1.2.1,b.1.2.1 22060,22061 2bjhA 260 5.41e+01 1cyi 90 5.55e+01 1ctj a.3.1.1 15804 1b6a 478 5.73e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1t8sA 484 5.77e+01 c.56.2.1 106679 1xjuA 163 5.79e+01 1broA 277 5.81e+01 1brt c.69.1.12 34700 1kmfA 21 5.84e+01 1q4vA 21 5.84e+01 1dfuP 94 5.88e+01 1dfuP b.53.1.1 26936 1mg2B 131 5.94e+01 g.21.1.1 79060 1uswA 260 6.03e+01 c.69.1.17 99895 1gluA 81 6.03e+01 2nllB g.39.1.2 45124 1xsfA 108 6.04e+01 1xw7A 21 6.05e+01 1brt 277 6.11e+01 1brt c.69.1.12 34699 1k3mA 21 6.18e+01 2a5jA 191 6.19e+01 1b6cB 342 6.23e+01 1b6cB d.144.1.7 41673 1eg9A 449 6.29e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1benA 21 6.33e+01 1g7aA 21 6.33e+01 1msoA 21 6.33e+01 1py5A 326 6.58e+01 d.144.1.7 104389 2aplA 157 6.59e+01 1latA 82 6.83e+01 2nllB g.39.1.2 45122 1h09A 338 6.94e+01 b.109.1.1,c.1.8.8 83420,83421 1i7nA 309 6.99e+01 c.30.1.5,d.142.1.3 83681,83682 1xfpA 142 7.05e+01 b.1.1.1 109587 1mkmA 249 7.05e+01 a.4.5.33,d.110.2.2 79242,79243 1k8kA 418 7.18e+01 c.55.1.1,c.55.1.1 68305,68306 2hmzA 113 7.19e+01 2mhr a.24.4.1 16564 1mntA 76 7.21e+01 1bazA a.43.1.1 17453 1ogpA 393 7.31e+01 b.1.18.6,d.176.1.1 92927,92928 1ctj 89 7.51e+01 1ctj a.3.1.1 15798 1cyj 90 7.59e+01 1ctj a.3.1.1 15805 1u2fA 90 7.60e+01 1u2fA d.58.7.1 39168 1gdc 72 7.69e+01 2nllB g.39.1.2 45127 1p5hA 428 7.81e+01 c.123.1.1 87802 1b75A 94 7.85e+01 1dfuP b.53.1.1 26937 1fjgM 126 7.89e+01 1fjfM a.156.1.1 16293 1p8xA 344 7.89e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1iohA 21 7.98e+01 1rweA 21 7.98e+01 1ydlA 79 8.12e+01 1f2lA 76 8.12e+01 1dokA d.9.1.1 37436 1pidA 21 8.31e+01 1fvuA 133 8.38e+01 1ixxB d.169.1.1 42345 1yw5A 177 8.62e+01 2c3vA 102 8.65e+01 1esxA 96 9.00e+01 1esxA j.11.1.1 59501