# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sjyA 159 9.02e-03 d.113.1.1 98900 1vheA 373 4.12e-02 b.49.3.1,c.56.5.4 100669,100670 1n08A 163 8.78e-02 b.43.5.1 79730 1se8A 301 3.19e-01 b.40.4.3 105448 1k2eA 156 3.45e-01 d.113.1.1 72010 1mqeA 207 4.07e-01 d.113.1.1 91394 1wznA 252 4.09e-01 2bbhA 269 4.77e-01 2b0vA 153 5.43e-01 1ylqA 96 6.25e-01 1u24A 337 7.49e-01 1x3eA 165 7.81e-01 1bb9 115 8.33e-01 1bb9 b.34.2.1 24554 1pm4A 119 1.23e+00 b.135.1.1 94891 1r8oA 96 1.30e+00 b.42.4.1 104852 1kxoA 184 1.55e+00 b.60.1.1 84475 1jmuB 666 1.65e+00 1ng2A 193 2.29e+00 b.34.2.1,b.34.2.1 85660,85661 2ahmE 203 2.41e+00 1wocA 103 2.57e+00 1kcfA 258 2.86e+00 a.140.2.1,c.55.3.7 68434,68435 1jeyA 609 3.08e+00 1jeqA b.131.1.1,c.62.1.3 90370,90371 1g2bA 62 3.59e+00 1tud b.34.2.1 24488 1pht 85 3.63e+00 1ckaA b.34.2.1 24483 1zhvA 134 4.13e+00 1p5vB 147 4.27e+00 b.2.3.2 87814 1amuA 563 4.47e+00 1amuA e.23.1.1 43351 2c43A 323 4.59e+00 1xn5A 146 4.85e+00 1l8bA 190 4.92e+00 d.86.1.1 73683 2a6aA 218 5.01e+00 1vyoA 128 5.03e+00 1gky 187 5.37e+00 1gky c.37.1.1 31839 1faoA 126 5.42e+00 1faoA b.55.1.1 26974 1fyhB 229 6.05e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 1y55X 126 6.44e+00 1t9fA 187 6.47e+00 b.42.6.1 106710 1twyA 290 6.94e+00 2aegA 268 6.95e+00 1umzA 278 7.00e+00 b.29.1.2 99639 1m8uA 173 7.04e+00 b.11.1.1,b.11.1.1 91233,91234 1cjaA 342 7.18e+00 1cjaA d.144.1.3 41708 1zd0A 150 7.57e+00 1m1hA 248 7.67e+00 b.114.1.1,d.58.42.1 78415,78416 2agmA 167 8.06e+00 1ahsA 126 8.27e+00 1ahsA b.19.1.1 23794 1ex7A 186 8.47e+00 1gky c.37.1.1 59537 2cqeA 98 8.75e+00 1pcfA 66 8.83e+00 1pcfA d.18.1.1 38142 1wyxA 69 8.99e+00 1qexA 288 9.28e+00 1qexA b.32.1.1 24425 1aoeA 192 9.52e+00 1aoeA c.71.1.1 34923 1sglA 209 9.55e+00 d.124.1.1 105536 1t4wA 196 9.62e+00 b.2.5.2 106427 2bkaA 242 9.79e+00 1vjyA 303 1.00e+01 d.144.1.7 108633 1gppA 237 1.01e+01 b.86.1.2 76262 1ktbA 405 1.03e+01 b.71.1.1,c.1.8.1 72960,72961 1t8tA 271 1.03e+01 c.37.1.5 106685 1w9hA 427 1.05e+01 1fna 93 1.06e+01 1fnf b.1.2.1 21971 2fkbA 180 1.07e+01 1o69A 394 1.11e+01 c.67.1.4 92560 2b06A 155 1.11e+01 1mfgA 95 1.12e+01 b.36.1.1 79043 1x1rA 178 1.14e+01 2c36A 285 1.17e+01 1ryqA 69 1.25e+01 g.41.9.3 105126 3dfr 162 1.30e+01 3dfr c.71.1.1 34880 1amm 174 1.31e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1m2oA 768 1.33e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1guiA 155 1.36e+01 b.18.1.14 76351 1uwfA 158 1.45e+01 1m1cA 680 1.46e+01 e.42.1.1 78395 3ullA 132 1.46e+01 3ullA b.40.4.3 25282 1z52A 470 1.49e+01 1bkb 136 1.50e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1mrzA 293 1.53e+01 b.43.5.1,c.26.1.3 91452,91453 1f7lA 121 1.54e+01 1f7lA d.150.1.2 59666 1qwtA 255 1.60e+01 b.26.1.3 96501 1sx5A 244 1.60e+01 c.52.1.2 99023 1xovA 326 1.62e+01 1vjfA 180 1.63e+01 d.116.1.1 100809 1twfA 1733 1.66e+01 1seiA 130 1.68e+01 1seiA d.140.1.1 41463 1vbvA 105 1.72e+01 2d1pB 119 1.73e+01 2fxqA 264 1.81e+01 1q1oA 98 1.83e+01 d.15.2.2 95596 1vhrA 184 1.84e+01 1vhrA c.45.1.1 32651 1rz2A 254 1.85e+01 b.100.1.1 105130 1l1dA 152 1.92e+01 b.88.1.3 73452 1neu 124 1.94e+01 1neu b.1.1.1 19704 1qwzA 235 1.98e+01 b.100.1.1 96510 1h9oA 112 2.03e+01 1qadA d.93.1.1 60837 1a70 97 2.03e+01 1awd d.15.4.1 37678 2fclA 169 2.07e+01 1qzgA 187 2.08e+01 b.40.4.3 96643 1e1oA 504 2.09e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1r26A 125 2.11e+01 c.47.1.1 96847 1wb4A 297 2.14e+01 1gqzA 274 2.16e+01 d.21.1.1,d.21.1.1 83311,83312 1nr4A 71 2.18e+01 d.9.1.1 92077 1vq3A 94 2.21e+01 2cklA 108 2.22e+01 1ng0A 253 2.23e+01 b.121.4.7 80475 2a7yA 83 2.24e+01 1x9mA 698 2.27e+01 1kid 203 2.36e+01 1derA c.8.5.1 30771 1wmhA 89 2.38e+01 2coaA 125 2.47e+01 1rewC 135 2.48e+01 g.7.1.3 97336 1twfI 122 2.49e+01 1mi8A 158 2.49e+01 b.86.1.2 91279 1yqdA 366 2.51e+01 1k8kA 418 2.54e+01 c.55.1.1,c.55.1.1 68305,68306 1vkiA 181 2.54e+01 d.116.1.1 108664 1a41 234 2.57e+01 1a41 d.163.1.2 42174 1zirA 173 2.59e+01 1sxvA 172 2.63e+01 1h8dH 260 2.64e+01 5ptp 2gkeA 274 2.80e+01 1ok0A 74 2.94e+01 b.5.1.1 93191 1oa4A 222 2.96e+01 b.29.1.11 86731 2f23A 156 2.97e+01 1vc3B 97 2.98e+01 1yarA 233 3.00e+01 2fdbM 164 3.04e+01 1wlsA 328 3.04e+01 1mqiA 263 3.04e+01 c.94.1.1 91398 2amxA 376 3.15e+01 1w7oA 118 3.26e+01 1eaxA 241 3.29e+01 b.47.1.2 64889 2hntE 81 3.31e+01 1ucyH 2a1vA 144 3.32e+01 2csvA 72 3.33e+01 1n6aA 259 3.36e+01 b.76.2.1,b.85.7.1 80121,80122 2b7kA 200 3.40e+01 3pviA 157 3.42e+01 3pviA c.52.1.6 33300 1l1eA 287 3.44e+01 c.66.1.18 73454 1ybiA 288 3.46e+01 1xmkA 79 3.50e+01 1yloA 348 3.51e+01 1cdy 178 3.51e+01 1cdy b.1.1.1,b.1.1.3 19719,21658 2cy3 118 3.51e+01 3cyr a.138.1.1 19649 1hq8A 123 3.54e+01 1b6e d.169.1.1 61127 1wp5A 323 3.59e+01 2djkA 133 3.62e+01 1zmeC 70 3.67e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 1pc6A 146 3.69e+01 d.262.1.1 94430 1tueA 212 3.72e+01 c.37.1.20 107323 2gf9A 189 3.76e+01 2c34A 116 3.87e+01 2fo3A 125 3.89e+01 1upiA 225 3.90e+01 b.82.1.1 99757 1xyiA 66 3.93e+01 1uthA 315 3.93e+01 c.94.1.1 108032 2biiA 424 3.93e+01 1y7mA 164 3.99e+01 1lvwA 295 3.99e+01 c.68.1.6 84723 1xd3A 230 4.05e+01 1ykdA 398 4.07e+01 1g8kB 133 4.11e+01 1g8jB b.33.1.1 24435 1mai 131 4.14e+01 1mai b.55.1.1 26951 2cb5A 453 4.14e+01 3gcb d.3.1.1 37035 1vcdA 126 4.21e+01 2cc3A 150 4.22e+01 1r4pA 297 4.26e+01 d.165.1.2 97025 1dynA 125 4.29e+01 1dynA b.55.1.1 26955 1lkkA 105 4.30e+01 1lckA d.93.1.1 40412 2g1lA 104 4.34e+01 1hztA 190 4.35e+01 1i9aA d.113.1.2 61459 1zdrA 164 4.37e+01 1nh8A 304 4.39e+01 c.94.1.1,d.58.5.3 80507,80508 2eulA 156 4.40e+01 1uaiA 224 4.44e+01 b.29.1.18 107761 1x6oA 174 4.49e+01 b.34.5.2,b.40.4.5 109493,109494 1r8nA 185 4.55e+01 b.42.4.1 104851 1jh6A 189 4.68e+01 d.61.1.1 66707 1ro7A 259 4.72e+01 c.130.1.1 97667 1usuB 170 4.84e+01 d.83.2.1 99886 1pufA 77 4.89e+01 a.4.1.1 95131 1agi 125 4.98e+01 7rsa d.5.1.1 37303 2bycA 137 5.14e+01 1kcvH 217 5.16e+01 b.1.1.1,b.1.1.2 72315,72316 1mjfA 281 5.26e+01 c.66.1.17 79198 1nb9A 147 5.32e+01 b.43.5.1 85515 1h5rA 293 5.35e+01 c.68.1.6 65623 1gnkA 112 5.36e+01 2pii d.58.5.1 39073 2sak 121 5.38e+01 2sak d.15.5.1 37711 1hyxH 224 5.38e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1o7dE 126 5.39e+01 1xfiA 367 5.44e+01 e.50.1.1 109584 1rhfA 182 5.50e+01 b.1.1.1,b.1.1.4 97469,97470 1s3sG 127 5.54e+01 d.15.1.2 98457 1vioA 243 5.59e+01 d.265.1.3,d.66.1.5 100762,100763 2c0zA 216 5.61e+01 2c3gA 98 5.62e+01 1wz3A 96 5.68e+01 1jhsA 188 5.71e+01 d.107.1.1 84172 2bv5A 282 5.72e+01 1wh2A 78 5.73e+01 1xqaA 113 5.77e+01 1os8A 223 5.81e+01 b.47.1.1 93481 1iwlA 182 5.94e+01 b.125.1.1 83757 1dwnA 127 5.95e+01 1dwnA d.85.1.1 40141 1jy5A 212 5.98e+01 d.124.1.1 71940 1vhsA 175 6.10e+01 d.108.1.1 100698 2c3vA 102 6.14e+01 1dekA 241 6.15e+01 1dekA c.37.1.1 31842 1vzqH 250 6.16e+01 1xdfA 157 6.20e+01 1ze3C 205 6.20e+01 1kk1A 410 6.20e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2gaxA 135 6.21e+01 1wcdJ 441 6.21e+01 2f69A 261 6.27e+01 2fu0A 160 6.27e+01 1m9zA 111 6.34e+01 g.7.1.3 78881 1wxiA 275 6.36e+01 1wtaA 275 6.38e+01 1syxB 86 6.44e+01 2bg5A 324 6.44e+01 2arcA 164 6.48e+01 2arcA b.82.4.1 28148 2d1pC 95 6.49e+01 1hn3A 40 6.52e+01 j.91.1.1 65892 1n26A 325 6.63e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 2avyM 117 6.64e+01 1zrjA 50 6.72e+01 2azwA 148 6.75e+01 1a0tP 413 6.75e+01 1a0tP f.4.3.2 43794 2fz4A 237 6.75e+01 1pwgA 349 6.77e+01 e.3.1.1 104340 1kkhA 317 6.78e+01 d.14.1.5,d.58.26.3 72645,72646 1jjzA 29 6.81e+01 g.3.3.1 71699 2fn4A 181 6.87e+01 1zvpA 133 6.93e+01 1iwdA 215 7.06e+01 d.3.1.1 83756 1jiwI 106 7.18e+01 1smpI b.61.2.1 63078 1z2nX 324 7.20e+01 2c7nA 74 7.23e+01 1em2A 229 7.25e+01 1em2A d.129.3.2 41321 1fsgA 233 7.31e+01 1qk3A c.61.1.1 34029 1epwA 1290 7.32e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1fjgP 88 7.32e+01 1emwA d.27.1.1 38444 1v8yA 170 7.37e+01 1xzzA 246 7.47e+01 2ar0A 541 7.55e+01 1vqoD 177 7.60e+01 1ly2A 130 7.63e+01 g.18.1.1,g.18.1.1 74335,74336 1ii7A 333 7.63e+01 1ii7A d.159.1.4 62415 1wbiA 129 7.67e+01 1f3vA 179 7.68e+01 1f3vA d.58.22.1 39382 1w0dA 337 7.71e+01 1yn8A 59 7.74e+01 1feuA 206 7.75e+01 1feuA b.53.1.1 59801 1eazA 125 7.77e+01 b.55.1.1 70113 1xakA 83 7.77e+01 1je5A 206 7.80e+01 1je5A b.40.4.7 62909 1l5wA 796 7.81e+01 c.87.1.4 73605 2axcA 264 7.83e+01 1lktA 104 8.02e+01 1lktA b.90.1.1 28398 1b35A 260 8.04e+01 1b35A b.121.4.1 23333 2ak3A 226 8.05e+01 1zin c.37.1.1,g.41.2.1 31892,45193 2bbkL 125 8.05e+01 2bbkL g.21.1.1 44882 1qxmA 300 8.05e+01 b.42.2.1,b.42.2.1 96533,96534 1yqsA 349 8.12e+01 1xsfA 108 8.13e+01 1g6gA 127 8.18e+01 1g6gA b.26.1.2 23916 1ylnA 252 8.19e+01 2bgcA 238 8.26e+01 1cfb 205 8.31e+01 1cfb b.1.2.1,b.1.2.1 21991,21992 1eajA 126 8.33e+01 1f5wA b.1.1.1 59401 1ve1A 304 8.34e+01 1srvA 145 8.38e+01 1derA c.8.5.1 30817 1uwsA 489 8.38e+01 c.1.8.4 108073 1rmwA 212 8.47e+01 1f0lA 535 8.49e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2acy 98 8.54e+01 2acy d.58.10.1 39298 1oxdA 227 8.58e+01 d.22.1.1 93687 2fy7A 287 8.60e+01 1no5A 114 8.63e+01 d.218.1.5 92014 2bsfA 176 8.66e+01 1d2vA 104 8.66e+01 1d2vA a.93.1.2 18697 1wa5C 960 8.69e+01 1u5dA 108 8.73e+01 1zxuA 217 8.87e+01 1flmA 122 8.89e+01 1axj b.45.1.1 25747 1a2yB 116 8.96e+01 1gc1H b.1.1.1 19927