# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sx5A 244 2.79e-02 c.52.1.2 99023 1qwtA 255 3.72e-01 b.26.1.3 96501 2cqeA 98 4.74e-01 1twyA 290 1.23e+00 1kcfA 258 2.99e+00 a.140.2.1,c.55.3.7 68434,68435 1lk9A 448 3.23e+00 c.67.1.1 78057 1md6A 154 3.42e+00 b.42.1.2 91242 2bbhA 269 4.51e+00 1gk9B 557 4.55e+00 1n08A 163 4.79e+00 b.43.5.1 79730 1d3gA 367 4.83e+00 1d3gA c.1.4.1 28600 1ng2A 193 5.06e+00 b.34.2.1,b.34.2.1 85660,85661 1hfuA 503 5.48e+00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2rslA 140 6.10e+00 2rslA c.53.1.1 33345 1pm4A 119 6.72e+00 b.135.1.1 94891 1j2gA 319 6.95e+00 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1oa4A 222 7.30e+00 b.29.1.11 86731 1e0cA 271 8.10e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1pc3A 350 9.27e+00 c.94.1.1 104102 1qynA 153 1.04e+01 d.33.1.1 96597 1bb9 115 1.06e+01 1bb9 b.34.2.1 24554 1v97A 1332 1.06e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1k8kA 418 1.07e+01 c.55.1.1,c.55.1.1 68305,68306 1gttA 429 1.32e+01 d.177.1.1,d.177.1.1 70529,70530 1u24A 337 1.33e+01 2fe5A 94 1.53e+01 1xzzA 246 1.55e+01 2bcqA 335 1.59e+01 1i4mA 108 1.67e+01 d.6.1.1 66025 1wtaA 275 1.73e+01 1paz 123 1.78e+01 1bqk b.6.1.1 22878 1w0dA 337 1.78e+01 1a2zA 220 1.82e+01 1a2zA c.56.4.1 33794 1vjvA 415 1.86e+01 d.3.1.9 108632 1bs0A 384 1.89e+01 1bs0A c.67.1.4 34490 1va0A 239 2.11e+01 1wyxA 69 2.14e+01 1jmuB 666 2.14e+01 1guiA 155 2.19e+01 b.18.1.14 76351 1xmkA 79 2.19e+01 1fiqC 763 2.22e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1kk1A 410 2.30e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1vheA 373 2.54e+01 b.49.3.1,c.56.5.4 100669,100670 1na6A 404 2.64e+01 b.142.1.1,c.52.1.22 91748,91749 1viaA 175 2.84e+01 c.37.1.2 100754 1eylA 186 2.92e+01 1wba b.42.4.1 25593 1n0lA 224 2.96e+01 b.1.11.1,b.7.2.1 79744,79745 1r4pA 297 2.98e+01 d.165.1.2 97025 1gvp 87 3.07e+01 1gvp b.40.4.7 25369 1g3mA 294 3.21e+01 c.37.1.5 83268 1oyc 400 3.31e+01 1oyc c.1.4.1 28603 1y96A 86 3.35e+01 1vjyA 303 3.38e+01 d.144.1.7 108633 1ugpB 226 3.48e+01 b.34.4.4 107832 2awfA 172 3.51e+01 1d02A 202 3.52e+01 1d02A c.52.1.8 33313 2bl9A 238 3.53e+01 2a2kA 175 3.56e+01 2por 301 3.63e+01 2por f.4.3.1 43759 1k8kC 372 3.76e+01 b.69.4.1 68308 2fy6A 143 3.78e+01 2bv5A 282 3.81e+01 1omoA 322 3.82e+01 c.2.1.13 104017 1vi6A 208 3.82e+01 c.23.15.1 100736 1fl1A 230 3.82e+01 1at3A b.57.1.1 27023 1dqzA 280 3.90e+01 1dqyA c.69.1.3 34638 1wyuB 474 3.97e+01 3gcb 470 4.16e+01 3gcb d.3.1.1 37032 2gkeA 274 4.21e+01 1ymkA 175 4.24e+01 2gnoA 305 4.50e+01 2bjuA 453 4.52e+01 1eajA 126 4.53e+01 1f5wA b.1.1.1 59401 1yqzA 438 4.64e+01 1fcqA 350 4.64e+01 c.1.8.9 65006 1mpp 361 4.71e+01 2rmpA b.50.1.2 26856 2cioA 212 4.71e+01 2fneA 117 4.85e+01 1mixA 206 4.97e+01 a.11.2.1,b.55.1.5 79166,79167 1s99A 200 5.09e+01 1kutA 230 5.24e+01 d.143.1.1 73017 1t8tA 271 5.31e+01 c.37.1.5 106685 1z4eA 153 5.36e+01 1khqA 212 5.45e+01 d.3.1.1 90964 1x1nA 524 5.49e+01 1hcnB 145 5.69e+01 1hcnB g.17.1.4 44810 1u5dA 108 5.71e+01 1kn6A 90 5.81e+01 d.58.3.3 72770 1hxrA 115 5.84e+01 1fwqA b.88.1.1 28392 2bgcA 238 5.90e+01 1lktA 104 5.94e+01 1lktA b.90.1.1 28398 2a6aA 218 5.97e+01 1cjaA 342 6.07e+01 1cjaA d.144.1.3 41708 1cghA 224 6.15e+01 1a7s b.47.1.2 26290 1gnwA 211 6.24e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1vp6A 138 6.28e+01 1v9tA 166 6.34e+01 b.62.1.1 108451 1mtyD 512 6.50e+01 1mhyD a.25.1.2 16742 1q4vA 21 6.70e+01 1spjA 238 6.76e+01 1mfgA 95 6.77e+01 b.36.1.1 79043 1ss9A 311 6.84e+01 c.68.1.4 105978 1gqzA 274 7.21e+01 d.21.1.1,d.21.1.1 83311,83312 2bkaA 242 7.21e+01 2cx1A 187 7.40e+01 1jihA 531 7.51e+01 d.240.1.1,e.8.1.7 90374,90375 2fh7A 595 7.80e+01 1l7dA 384 7.86e+01 c.2.1.4,c.23.12.2 77774,77775 1bf5A 545 7.88e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1qveA 126 7.89e+01 d.24.1.1 104594 2aa4A 289 7.96e+01 2g1lA 104 7.97e+01 1io7A 368 7.99e+01 1f4tA a.104.1.1 18971 1x89A 178 7.99e+01 1oygA 447 8.02e+01 b.67.2.2 93726 1iu8A 206 8.11e+01 c.56.4.1 71436 1g0yI 21 8.21e+01 k.19.1.1 46448 1rhfA 182 8.21e+01 b.1.1.1,b.1.1.4 97469,97470 1zgoA 223 8.21e+01 1e0nA 27 8.27e+01 b.72.1.1 27807 1qmyA 167 8.36e+01 1qmyA d.3.1.2 37094 1xdnA 277 8.58e+01 1q45A 391 8.67e+01 c.1.4.1 95780 1utyA 187 8.76e+01 b.147.1.1 108036 1ga8A 311 8.95e+01 1ga8A c.68.1.4 34516