# List of top-scoring protein chains for t06-100-30-o_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sx5A 244 1.23e-01 c.52.1.2 99023 1kcfA 258 6.81e-01 a.140.2.1,c.55.3.7 68434,68435 1oa4A 222 8.54e-01 b.29.1.11 86731 1twyA 290 2.04e+00 1qwtA 255 3.12e+00 b.26.1.3 96501 2bjuA 453 3.20e+00 1vqqA 646 3.27e+00 1d3gA 367 3.62e+00 1d3gA c.1.4.1 28600 1ton 235 3.81e+00 5ptp b.47.1.2 26307 1elvA 333 4.20e+00 5ptp b.47.1.2,g.18.1.1 59454,59455 1cjaA 342 4.22e+00 1cjaA d.144.1.3 41708 1wtaA 275 4.93e+00 1l6pA 125 5.07e+00 b.1.17.1 73626 1pm4A 119 6.37e+00 b.135.1.1 94891 2cqeA 98 7.56e+00 1q45A 391 7.63e+00 c.1.4.1 95780 1hfuA 503 7.76e+00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1gttA 429 9.70e+00 d.177.1.1,d.177.1.1 70529,70530 3gcb 470 9.90e+00 3gcb d.3.1.1 37032 1m8uA 173 1.03e+01 b.11.1.1,b.11.1.1 91233,91234 1md6A 154 1.04e+01 b.42.1.2 91242 1eajA 126 1.06e+01 1f5wA b.1.1.1 59401 1pc3A 350 1.08e+01 c.94.1.1 104102 1xmkA 79 1.10e+01 2aq5A 402 1.10e+01 1j2gA 319 1.18e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1bs0A 384 1.30e+01 1bs0A c.67.1.4 34490 1wsrA 375 1.31e+01 1uwfA 158 1.40e+01 1qfoA 119 1.46e+01 1qfoA b.1.1.1 19708 2g6yA 217 1.46e+01 1o6dA 163 1.49e+01 c.116.1.3 92567 1wocA 103 1.59e+01 1upiA 225 1.66e+01 b.82.1.1 99757 2fy6A 143 1.72e+01 1ocsA 162 1.80e+01 d.189.1.1 92776 1qynA 153 1.85e+01 d.33.1.1 96597 1y96A 86 1.87e+01 1n08A 163 1.92e+01 b.43.5.1 79730 1z4eA 153 2.17e+01 1xvsA 126 2.17e+01 1umgA 362 2.25e+01 d.280.1.1 107956 1wk2A 121 2.31e+01 1os8A 223 2.41e+01 b.47.1.1 93481 1va0A 239 2.46e+01 1fthA 122 2.48e+01 d.150.1.2 60028 1vd3A 217 2.54e+01 1zuoA 186 2.76e+01 2covD 104 2.81e+01 1w0nA 131 2.83e+01 1lktA 104 2.86e+01 1lktA b.90.1.1 28398 2bbhA 269 2.94e+01 1gqzA 274 3.05e+01 d.21.1.1,d.21.1.1 83311,83312 1oqvA 192 3.10e+01 d.24.1.2 87320 2gkeA 274 3.11e+01 1yq2A 1024 3.21e+01 1gvp 87 3.21e+01 1gvp b.40.4.7 25369 1kn6A 90 3.30e+01 d.58.3.3 72770 1gvhA 396 3.34e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1bli 483 3.34e+01 1bli b.71.1.1,c.1.8.1 27715,28702 2nlrA 234 3.39e+01 2nlrA b.29.1.11 24344 1uunA 184 3.43e+01 f.6.1.2 100012 1tueA 212 3.49e+01 c.37.1.20 107323 1avwB 171 3.55e+01 1wba b.42.4.1 25599 1nw1A 429 3.77e+01 d.144.1.8 86286 1jjzA 29 3.78e+01 g.3.3.1 71699 1v97A 1332 3.82e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1faoA 126 3.84e+01 1faoA b.55.1.1 26974 1vi6A 208 3.85e+01 c.23.15.1 100736 2bdeA 470 4.00e+01 1vjvA 415 4.02e+01 d.3.1.9 108632 1neu 124 4.04e+01 1neu b.1.1.1 19704 1wzzA 334 4.10e+01 1c3cA 429 4.14e+01 1c3cA a.127.1.1 19425 2fdbM 164 4.35e+01 2evrA 246 4.44e+01 1oygA 447 4.45e+01 b.67.2.2 93726 2cb5A 453 4.45e+01 3gcb d.3.1.1 37035 1zirA 173 4.51e+01 2bcqA 335 4.53e+01 1na6A 404 4.54e+01 b.142.1.1,c.52.1.22 91748,91749 1bb9 115 4.54e+01 1bb9 b.34.2.1 24554 1bf5A 545 4.55e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1ahsA 126 4.56e+01 1ahsA b.19.1.1 23794 2cunA 410 4.59e+01 1oh0A 131 4.61e+01 d.17.4.3 87004 1qq9A 284 4.85e+01 1xjo c.56.5.4 33841 1t62A 166 4.86e+01 b.122.1.4 106541 1gk9B 557 4.87e+01 1viaA 175 5.03e+01 c.37.1.2 100754 1u14A 172 5.08e+01 c.51.4.3 107579 2azwA 148 5.13e+01 1rxdA 159 5.17e+01 2biiA 424 5.22e+01 1a53 247 5.27e+01 1a53 c.1.2.4 28564 2fe5A 94 5.27e+01 1c7sA 858 5.27e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 2g3aA 152 5.46e+01 1eb6A 177 5.55e+01 d.92.1.12 64895 1vjyA 303 5.57e+01 d.144.1.7 108633 1kk1A 410 5.59e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1hxrA 115 5.65e+01 1fwqA b.88.1.1 28392 1cdy 178 5.67e+01 1cdy b.1.1.1,b.1.1.3 19719,21658 1cjwA 166 5.79e+01 1cjwA d.108.1.1 40818 1oyc 400 5.86e+01 1oyc c.1.4.1 28603 2fmpA 335 5.92e+01 2bcmA 165 6.04e+01 1ng2A 193 6.06e+01 b.34.2.1,b.34.2.1 85660,85661 1wyxA 69 6.08e+01 1qwzA 235 6.10e+01 b.100.1.1 96510 1u7bA 261 6.25e+01 1khqA 212 6.53e+01 d.3.1.1 90964 1cpo 299 6.61e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 1v9tA 166 6.71e+01 b.62.1.1 108451 1el5A 389 6.73e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 2d3jA 157 6.85e+01 1pvxA 194 6.87e+01 1axkA b.29.1.11 24341 1zx0A 236 6.88e+01 1kxoA 184 6.89e+01 b.60.1.1 84475 2cioA 212 6.89e+01 2dp5A 332 6.96e+01 1l8fA 207 7.08e+01 b.52.1.1 84537 1mpp 361 7.21e+01 2rmpA b.50.1.2 26856 2apr 325 7.21e+01 2er7E b.50.1.2 26819 1xsfA 108 7.39e+01 4ubpB 126 7.46e+01 1ubpB b.85.3.1 28345 2b8lA 405 7.49e+01 1xzzA 246 7.56e+01 1lk9A 448 7.59e+01 c.67.1.1 78057 1ro5A 201 7.70e+01 d.108.1.3 105023 2fug7 129 7.71e+01 1zjkA 403 7.87e+01 2bbkL 125 7.89e+01 2bbkL g.21.1.1 44882 1zgoA 223 7.91e+01 1vhvA 268 7.95e+01 c.90.1.1 100704 1ckmA 330 8.03e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 2sak 121 8.08e+01 2sak d.15.5.1 37711 2fclA 169 8.09e+01 2bs3A 656 8.17e+01 1zwyA 185 8.26e+01 1lgpA 116 8.39e+01 b.26.1.2 73890 1zosA 230 8.40e+01 1xe1A 116 8.49e+01 b.43.3.1 109571 1t0fA 276 8.51e+01 2f2bA 246 8.68e+01 1mtyD 512 8.78e+01 1mhyD a.25.1.2 16742 1nrvA 105 8.90e+01 d.93.1.1 86126 2gzqA 200 8.93e+01 1w6vA 141 8.99e+01