# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1eu8A 409 5.95e-03 1eu8A c.94.1.1 59502 1twyA 290 4.87e-02 1uwcA 261 3.98e-01 c.69.1.17 100101 1oh0A 131 7.98e-01 d.17.4.3 87004 1rvkA 382 1.11e+00 c.1.11.2,d.54.1.1 97928,97929 1upiA 225 1.93e+00 b.82.1.1 99757 1kcfA 258 2.30e+00 a.140.2.1,c.55.3.7 68434,68435 1ofcX 304 3.16e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1md6A 154 3.18e+00 b.42.1.2 91242 1i6pA 220 3.26e+00 1ddzA c.53.2.1 61848 2cqeA 98 3.33e+00 1d3gA 367 3.73e+00 1d3gA c.1.4.1 28600 1ukcA 522 4.12e+00 c.69.1.17 107911 1ve1A 304 5.16e+00 1w2iA 91 5.96e+00 d.58.10.1 109127 1m8uA 173 6.10e+00 b.11.1.1,b.11.1.1 91233,91234 1ywwA 85 6.53e+00 1vhqA 232 8.96e+00 c.23.16.2 100696 1mugA 168 9.13e+00 1mugA c.18.1.2 31030 2bg5A 324 9.45e+00 1wtaA 275 1.05e+01 1eajA 126 1.05e+01 1f5wA b.1.1.1 59401 1c1lA 136 1.16e+01 1c1lA b.29.1.3 24219 1wocA 103 1.28e+01 2gzqA 200 1.34e+01 1qynA 153 1.37e+01 d.33.1.1 96597 2crbA 97 1.40e+01 1rxdA 159 1.41e+01 1cg2A 393 1.48e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1gvhA 396 1.48e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2ahmE 203 1.48e+01 1ng2A 193 1.58e+01 b.34.2.1,b.34.2.1 85660,85661 1sd4A 126 1.61e+01 a.4.5.39 105428 1k78A 149 1.66e+01 a.4.1.5,a.4.1.5 68255,68256 1p8xA 344 1.70e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1j55A 95 1.76e+01 a.39.1.2 77078 1d02A 202 1.83e+01 1d02A c.52.1.8 33313 1vjvA 415 1.89e+01 d.3.1.9 108632 1kkhA 317 2.00e+01 d.14.1.5,d.58.26.3 72645,72646 1q45A 391 2.01e+01 c.1.4.1 95780 1rm6B 324 2.06e+01 1oa4A 222 2.14e+01 b.29.1.11 86731 1bf5A 545 2.16e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1a2zA 220 2.16e+01 1a2zA c.56.4.1 33794 1vq3A 94 2.20e+01 1rzsA 61 2.29e+01 a.35.1.2 105139 1p6xA 334 2.30e+01 c.37.1.1 94195 2biiA 424 2.36e+01 2covD 104 2.46e+01 1qwtA 255 2.50e+01 b.26.1.3 96501 1gpc 218 2.53e+01 1gpc b.40.4.7 25393 1v97A 1332 2.62e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 2azwA 148 2.66e+01 1tk9A 188 2.73e+01 c.80.1.3 107082 1l1qA 186 2.87e+01 c.61.1.1 77653 1wkuA 254 2.91e+01 1tueA 212 2.92e+01 c.37.1.20 107323 1rjdA 334 2.94e+01 c.66.1.37 97558 2avyM 117 2.97e+01 1yf3A 259 3.11e+01 1tzvA 142 3.12e+01 a.79.1.1 107526 1oxdA 227 3.12e+01 d.22.1.1 93687 1gk9A 260 3.13e+01 d.153.1.2 65246 1fthA 122 3.21e+01 d.150.1.2 60028 1usuB 170 3.27e+01 d.83.2.1 99886 3sdhA 146 3.40e+01 3sdhA a.1.1.2 14984 1ngnA 155 3.60e+01 a.96.1.2 85697 1ew0A 130 3.61e+01 1drmA d.110.3.2 40905 2bkaA 242 3.68e+01 1ga6A 372 3.71e+01 1ga1A c.41.1.2 32556 1el5A 389 3.73e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1umgA 362 3.81e+01 d.280.1.1 107956 2fbyA 205 3.82e+01 1gxrA 337 3.89e+01 b.69.4.1 70722 1zuwA 272 3.93e+01 1oqvA 192 3.96e+01 d.24.1.2 87320 1zirA 173 4.04e+01 1zs4A 83 4.06e+01 1sx5A 244 4.34e+01 c.52.1.2 99023 1f8rA 498 4.67e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 2a1kA 233 4.89e+01 1j5sA 463 4.91e+01 c.1.9.8 71580 1xzzA 246 5.04e+01 1yn3A 98 5.17e+01 1repC 251 5.27e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2cioA 212 5.29e+01 1xjuA 163 5.32e+01 1odfA 290 5.39e+01 c.37.1.6 92782 1vk4A 298 5.42e+01 c.72.1.1 100850 1ls9A 91 5.49e+01 a.3.1.1 78177 1pvxA 194 5.60e+01 1axkA b.29.1.11 24341 1w6vA 141 5.75e+01 1mk0A 97 5.79e+01 d.226.1.1 79216 1vkdA 338 5.79e+01 b.67.2.4 108644 1pa7A 130 5.79e+01 a.40.1.1 94410 1qfoA 119 5.82e+01 1qfoA b.1.1.1 19708 1xeeA 91 6.19e+01 2g6yA 217 6.24e+01 2c30A 321 6.44e+01 2aliA 158 6.48e+01 1khqA 212 6.54e+01 d.3.1.1 90964 1is3A 135 6.59e+01 b.29.1.3 76773 2eng 210 6.79e+01 2eng b.52.1.1 26895 1gttA 429 6.83e+01 d.177.1.1,d.177.1.1 70529,70530 1yozA 116 6.92e+01 1n08A 163 6.93e+01 b.43.5.1 79730 1y9iA 178 6.98e+01 1earA 147 7.07e+01 b.107.1.1,d.58.38.1 64875,64876 1t8kA 77 7.21e+01 a.28.1.1 106666 2bayA 61 7.23e+01 1xmkA 79 7.30e+01 1l6pA 125 7.31e+01 b.1.17.1 73626 1gqzA 274 7.33e+01 d.21.1.1,d.21.1.1 83311,83312 1jcaA 21 7.38e+01 2bjuA 453 7.42e+01 2gi3A 476 7.43e+01 2csoA 127 7.45e+01 1kutA 230 7.48e+01 d.143.1.1 73017 1ncwH 222 7.51e+01 b.1.1.1,b.1.1.2 85555,85556 1y7wA 291 7.57e+01 1paz 123 7.64e+01 1bqk b.6.1.1 22878 1u7bA 261 7.65e+01 1e5rA 290 7.73e+01 1e5rA b.82.2.4 59276 1i4mA 108 7.75e+01 d.6.1.1 66025 1rweA 21 7.83e+01 1a70 97 7.95e+01 1awd d.15.4.1 37678 1lkqA 21 8.13e+01 1cpo 299 8.14e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 1ivyA 452 8.20e+01 1ivyA c.69.1.5 34654 1iogA 21 8.27e+01 2bcqA 335 8.31e+01 1mtyD 512 8.42e+01 1mhyD a.25.1.2 16742 1bl0A 129 8.46e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 2fgeA 995 8.71e+01 1q4vA 21 8.85e+01 1zuoA 186 8.93e+01 1wa3A 205 8.99e+01