# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sx5A 244 2.34e-01 c.52.1.2 99023 1qwtA 255 2.88e-01 b.26.1.3 96501 2bbhA 269 4.16e-01 1kcfA 258 7.27e-01 a.140.2.1,c.55.3.7 68434,68435 1ng2A 193 1.01e+00 b.34.2.1,b.34.2.1 85660,85661 1vjvA 415 1.53e+00 d.3.1.9 108632 1pc3A 350 1.73e+00 c.94.1.1 104102 1d3gA 367 1.75e+00 1d3gA c.1.4.1 28600 1j2gA 319 2.45e+00 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1n08A 163 2.60e+00 b.43.5.1 79730 1gk9B 557 2.97e+00 1gttA 429 3.16e+00 d.177.1.1,d.177.1.1 70529,70530 1wyxA 69 3.27e+00 1twyA 290 4.68e+00 2cqeA 98 5.14e+00 1oa4A 222 5.26e+00 b.29.1.11 86731 3gcb 470 5.71e+00 3gcb d.3.1.1 37032 1lk9A 448 5.82e+00 c.67.1.1 78057 1md6A 154 5.96e+00 b.42.1.2 91242 1bb9 115 6.34e+00 1bb9 b.34.2.1 24554 1eajA 126 6.93e+00 1f5wA b.1.1.1 59401 2ahmE 203 8.22e+00 1wtaA 275 8.57e+00 1e0cA 271 8.94e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1l7dA 384 8.99e+00 c.2.1.4,c.23.12.2 77774,77775 1yqzA 438 9.40e+00 2bv5A 282 9.67e+00 1i1qA 520 1.07e+01 1qdlA d.161.1.1 61543 1vheA 373 1.09e+01 b.49.3.1,c.56.5.4 100669,100670 1kk1A 410 1.10e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1yf2A 425 1.17e+01 1j5wA 298 1.44e+01 d.104.1.1 71589 1vi6A 208 1.46e+01 c.23.15.1 100736 2bmeA 186 1.71e+01 2rslA 140 1.78e+01 2rslA c.53.1.1 33345 1cs1A 386 1.79e+01 1ibjA c.67.1.3 34399 1q33A 292 1.87e+01 d.113.1.1 95657 1bs0A 384 1.89e+01 1bs0A c.67.1.4 34490 1paz 123 1.89e+01 1bqk b.6.1.1 22878 1v97A 1332 1.94e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1vjyA 303 2.08e+01 d.144.1.7 108633 1pot 325 2.11e+01 1pot c.94.1.1 35807 1xq6A 253 2.18e+01 1lmq 129 2.22e+01 3lzt d.2.1.2 36588 1pvxA 194 2.32e+01 1axkA b.29.1.11 24341 1kutA 230 2.39e+01 d.143.1.1 73017 1vd3A 217 2.40e+01 1gvp 87 2.44e+01 1gvp b.40.4.7 25369 1viaA 175 2.47e+01 c.37.1.2 100754 2aa4A 289 2.49e+01 2awpA 198 2.59e+01 2cb5A 453 2.65e+01 3gcb d.3.1.1 37035 2por 301 2.69e+01 2por f.4.3.1 43759 1pm4A 119 2.69e+01 b.135.1.1 94891 1uwfA 158 2.98e+01 1a53 247 3.02e+01 1a53 c.1.2.4 28564 1k8kA 418 3.05e+01 c.55.1.1,c.55.1.1 68305,68306 1cjaA 342 3.09e+01 1cjaA d.144.1.3 41708 1l6pA 125 3.10e+01 b.1.17.1 73626 1vq3A 94 3.15e+01 1r4pA 297 3.32e+01 d.165.1.2 97025 2fy6A 143 3.36e+01 1gqzA 274 3.44e+01 d.21.1.1,d.21.1.1 83311,83312 1qynA 153 3.45e+01 d.33.1.1 96597 1cg2A 393 3.54e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1qfoA 119 3.68e+01 1qfoA b.1.1.1 19708 1faoA 126 3.69e+01 1faoA b.55.1.1 26974 1omzA 293 3.77e+01 c.68.1.15 87093 2fmpA 335 3.85e+01 1q7eA 428 3.87e+01 c.123.1.1 96035 1lvmA 229 3.88e+01 b.47.1.3 78243 2fe5A 94 3.89e+01 1p99A 295 4.05e+01 c.94.1.1 94384 1sznA 417 4.07e+01 b.71.1.1,c.1.8.1 106162,106163 1hl9A 449 4.12e+01 b.71.1.3,c.1.8.11 90650,90651 1q45A 391 4.22e+01 c.1.4.1 95780 4ubpB 126 4.47e+01 1ubpB b.85.3.1 28345 2az4A 429 4.48e+01 2biiA 424 4.53e+01 2gkeA 274 4.59e+01 1uwsA 489 4.60e+01 c.1.8.4 108073 2aq5A 402 4.62e+01 1e0nA 27 4.64e+01 b.72.1.1 27807 1amuA 563 4.68e+01 1amuA e.23.1.1 43351 1lgpA 116 4.69e+01 b.26.1.2 73890 2bnuA 203 4.72e+01 1fl1A 230 4.76e+01 1at3A b.57.1.1 27023 1u24A 337 4.78e+01 1reqA 727 4.82e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 2dg5B 190 4.87e+01 1kqfB 294 4.95e+01 d.58.1.5,f.23.22.1 75900,75901 1d02A 202 4.97e+01 1d02A c.52.1.8 33313 1m6dA 214 5.03e+01 d.3.1.1 84849 1avwB 171 5.18e+01 1wba b.42.4.1 25599 1jjzA 29 5.18e+01 g.3.3.1 71699 1zcjA 463 5.23e+01 2bgcA 238 5.27e+01 2bkaA 242 5.47e+01 1omoA 322 5.50e+01 c.2.1.13 104017 1ukcA 522 5.52e+01 c.69.1.17 107911 2exnA 136 5.54e+01 1eb6A 177 5.76e+01 d.92.1.12 64895 2cx1A 187 5.77e+01 1pvmA 184 5.81e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1dq3A 454 5.90e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1y7bA 542 5.91e+01 1xezA 721 5.93e+01 1p9oA 313 5.99e+01 c.72.3.1 94397 1m2oA 768 6.12e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1xdnA 277 6.15e+01 1xzzA 246 6.30e+01 1ahsA 126 6.33e+01 1ahsA b.19.1.1 23794 1ua7A 422 6.47e+01 b.71.1.1,c.1.8.1 107759,107760 1wyuB 474 6.57e+01 1hxrA 115 6.59e+01 1fwqA b.88.1.1 28392 1zgoA 223 6.64e+01 1ruwA 69 6.91e+01 1c7sA 858 7.02e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1w9sA 142 7.15e+01 1qmyA 167 7.22e+01 1qmyA d.3.1.2 37094 1mfgA 95 7.27e+01 b.36.1.1 79043 2bjfA 329 7.31e+01 1qxmA 300 7.32e+01 b.42.2.1,b.42.2.1 96533,96534 1nrvA 105 7.32e+01 d.93.1.1 86126 1w0dA 337 7.32e+01 1sxvA 172 7.52e+01 1xewX 182 7.55e+01 1xkwA 665 7.60e+01 2azwA 148 7.92e+01 1wb9A 800 8.07e+01 1dro 122 8.11e+01 1btn b.55.1.1 26954 1u5dA 108 8.12e+01 1m40A 263 8.12e+01 e.3.1.1 74437 2bw4A 340 8.32e+01 1pc6A 146 8.55e+01 d.262.1.1 94430 1q4vA 21 8.60e+01 1mqeA 207 8.64e+01 d.113.1.1 91394 1f0xA 571 8.78e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1jpyA 137 8.79e+01 g.17.1.6 67065 2pvbA 107 8.80e+01 1a75A a.39.1.4 17205 2csoA 127 8.80e+01 2sak 121 8.99e+01 2sak d.15.5.1 37711