# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m8uA 173 3.00e-01 b.11.1.1,b.11.1.1 91233,91234 1wocA 103 3.64e-01 2cqeA 98 4.97e-01 1tueA 212 1.41e+00 c.37.1.20 107323 1upiA 225 1.44e+00 b.82.1.1 99757 1xmkA 79 2.53e+00 1k78A 149 3.33e+00 a.4.1.5,a.4.1.5 68255,68256 1uwcA 261 3.64e+00 c.69.1.17 100101 1twyA 290 4.13e+00 2biiA 424 4.15e+00 1zirA 173 4.28e+00 1ukcA 522 4.94e+00 c.69.1.17 107911 1kxoA 184 5.94e+00 b.60.1.1 84475 1eajA 126 6.09e+00 1f5wA b.1.1.1 59401 2c30A 321 8.11e+00 1pm4A 119 8.75e+00 b.135.1.1 94891 2crbA 97 1.02e+01 2azwA 148 1.13e+01 1wa5C 960 1.15e+01 1zs4A 83 1.15e+01 1ahsA 126 1.24e+01 1ahsA b.19.1.1 23794 1sd4A 126 1.34e+01 a.4.5.39 105428 1ywwA 85 1.37e+01 1x1rA 178 1.50e+01 1amm 174 1.51e+01 1amm b.11.1.1,b.11.1.1 23587,23588 2fclA 169 1.56e+01 1n26A 325 1.97e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1p8xA 344 2.12e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1zhvA 134 2.20e+01 1xeeA 91 2.27e+01 1md6A 154 2.28e+01 b.42.1.2 91242 1wtaA 275 2.32e+01 1k2eA 156 2.34e+01 d.113.1.1 72010 1sjyA 159 2.46e+01 d.113.1.1 98900 1ocsA 162 2.54e+01 d.189.1.1 92776 1zbqA 327 2.69e+01 1yn3A 98 2.71e+01 1kn6A 90 2.78e+01 d.58.3.3 72770 1lkqA 21 2.83e+01 1xn5A 146 2.87e+01 1jcaA 21 2.89e+01 1c4oA 664 3.02e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1xjuA 163 3.05e+01 1se8A 301 3.07e+01 b.40.4.3 105448 1iogA 21 3.15e+01 1ve1A 304 3.16e+01 1n08A 163 3.24e+01 b.43.5.1 79730 1k3mA 21 3.26e+01 1q4vA 21 3.30e+01 1msoA 21 3.31e+01 1rxdA 159 3.32e+01 1xw7A 21 3.35e+01 1rweA 21 3.67e+01 2bkaA 242 3.74e+01 1yozA 116 3.78e+01 1rh5A 436 4.03e+01 f.41.1.1 97464 1fp2A 352 4.28e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1a2zA 220 4.42e+01 1a2zA c.56.4.1 33794 2fz4A 237 4.49e+01 1q0pA 223 4.51e+01 c.62.1.1 95507 1bb8 71 4.55e+01 2bb8 d.10.1.1 37478 2f9cA 334 4.60e+01 1o7nA 449 4.60e+01 b.33.1.2,d.129.3.3 81162,81163 2c0zA 216 4.66e+01 1oxdA 227 4.70e+01 d.22.1.1 93687 1wxiA 275 4.71e+01 1o7dE 126 4.87e+01 1pidA 21 4.92e+01 1axiB 236 4.95e+01 1axiB b.1.2.1,b.1.2.1 21997,21998 2awkA 228 4.98e+01 2bayA 61 5.03e+01 1xd3A 230 5.05e+01 2bn3A 21 5.12e+01 2c1lA 358 5.16e+01 1fnnA 389 5.31e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1oh0A 131 5.34e+01 d.17.4.3 87004 2bmoA 447 5.35e+01 1repC 251 5.37e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1jhsA 188 5.48e+01 d.107.1.1 84172 2cb5A 453 5.51e+01 3gcb d.3.1.1 37035 2bg5A 324 5.65e+01 1ls9A 91 5.67e+01 a.3.1.1 78177 1dynA 125 5.84e+01 1dynA b.55.1.1 26955 1j55A 95 5.93e+01 a.39.1.2 77078 1gvhA 396 5.97e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1odfA 290 6.07e+01 c.37.1.6 92782 1wk2A 121 6.29e+01 1wu7A 434 6.47e+01 1zgoA 223 6.50e+01 1jjzA 29 6.50e+01 g.3.3.1 71699 1vheA 373 6.53e+01 b.49.3.1,c.56.5.4 100669,100670 1t8kA 77 6.55e+01 a.28.1.1 106666 2fbyA 205 6.57e+01 1lgpA 116 6.58e+01 b.26.1.2 73890 1gq8A 319 6.73e+01 b.80.1.5 70350 1flcB 175 6.80e+01 1flcB h.3.1.1 45716 1cjaA 342 7.01e+01 1cjaA d.144.1.3 41708 1zljA 78 7.09e+01 2cz2A 223 7.15e+01 1gvp 87 7.16e+01 1gvp b.40.4.7 25369 1eo6A 117 7.24e+01 1eo6A d.15.1.3 37609 1f8rA 498 7.25e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1xvsA 126 7.27e+01 2eveA 157 7.38e+01 1ofcX 304 7.40e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1y9iA 178 7.53e+01 1vjyA 303 7.61e+01 d.144.1.7 108633 1v66A 65 7.69e+01 2c43A 323 7.83e+01 2beqD 48 7.95e+01 1y96A 86 8.20e+01 1hmt 132 8.24e+01 1hmt b.60.1.2 27169 1n1cA 217 8.26e+01 a.184.1.1 85254 1js3A 486 8.28e+01 c.67.1.6 67215 1h6tA 291 8.45e+01 b.1.18.15,c.10.2.1 65686,65687 1cg2A 393 8.51e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 2bs3A 656 8.67e+01 1a70 97 8.69e+01 1awd d.15.4.1 37678 3htsB 102 8.91e+01 2hts a.4.5.22 16175 2dp5A 332 8.95e+01 1ng0A 253 8.96e+01 b.121.4.7 80475 2bz1A 196 8.98e+01