# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k8kA 418 1.82e-01 c.55.1.1,c.55.1.1 68305,68306 1htyA 1015 5.50e-01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1oa4A 222 5.78e-01 b.29.1.11 86731 1d2kA 392 2.19e+00 1d2kA c.1.8.5,d.26.3.1 29008,38442 1bxoA 323 2.48e+00 2er7E b.50.1.2 26805 1kblA 873 2.96e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1kolA 398 3.48e+00 b.35.1.2,c.2.1.1 77474,77475 1ncwL 219 3.83e+00 b.1.1.1,b.1.1.2 85557,85558 1nrwA 288 3.85e+00 c.108.1.10 86128 1jchA 551 4.45e+00 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 2d0oA 610 4.56e+00 1zcjA 463 4.61e+00 1l9kA 305 5.10e+00 c.66.1.25 84569 1yuwA 554 5.12e+00 1gpeA 587 5.64e+00 1gpeA c.3.1.2,d.16.1.1 30387,37951 1h7wA 1025 6.21e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1w0pA 781 6.53e+00 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1gteA 1025 7.00e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ll7A 392 7.16e+00 c.1.8.5,d.26.3.1 78085,78086 1oqvA 192 7.45e+00 d.24.1.2 87320 2cn3A 737 8.76e+00 1f1xA 322 8.93e+00 d.32.1.3,d.32.1.3 83208,83209 1wmxA 205 9.21e+00 b.18.1.24 109418 1bf2 750 9.57e+00 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1heiA 451 9.64e+00 1heiA c.37.1.14,c.37.1.14 32463,32464 1axiB 236 1.01e+01 1axiB b.1.2.1,b.1.2.1 21997,21998 1kxoA 184 1.08e+01 b.60.1.1 84475 1rcuA 195 1.13e+01 c.129.1.1 97295 1ct9A 553 1.14e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 2al2A 436 1.21e+01 1n35A 1267 1.21e+01 e.8.1.4 79935 1ms9A 648 1.23e+01 b.29.1.15,b.68.1.1 85088,85089 1w9pA 433 1.25e+01 1uumA 372 1.35e+01 c.1.4.1 100010 1phk 298 1.35e+01 1cdkA d.144.1.7 41635 1d3gA 367 1.37e+01 1d3gA c.1.4.1 28600 1ng0A 253 1.37e+01 b.121.4.7 80475 1evyA 366 1.40e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1y0pA 571 1.44e+01 3csuA 310 1.46e+01 3csuA c.78.1.1,c.78.1.1 35094,35095 1xwl 580 1.52e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 1e3mA 800 1.55e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1hyoA 421 1.60e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1wb9A 800 1.62e+01 1q9iA 571 1.63e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1lehA 364 1.65e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 2cqeA 98 1.66e+01 1oxwA 373 1.66e+01 c.19.1.3 87539 2fh5A 185 1.68e+01 2cvxA 888 1.74e+01 1q9rA 219 1.82e+01 b.1.1.1,b.1.1.2 96305,96306 1qgjA 300 1.90e+01 1bgp a.93.1.1 18691 2f6hX 419 1.95e+01 1on3A 523 2.03e+01 c.14.1.4,c.14.1.4 87107,87108 1kcfA 258 2.31e+01 a.140.2.1,c.55.3.7 68434,68435 1wljA 189 2.31e+01 2adgA 214 2.47e+01 1uwsA 489 2.50e+01 c.1.8.4 108073 1yc5A 246 2.57e+01 1a0cA 438 2.60e+01 1a0cA c.1.15.3 29529 2cfuA 658 2.65e+01 2giyA 191 2.67e+01 2ahuA 531 2.76e+01 4bcl 366 2.77e+01 4bcl b.75.1.1 27968 1cskA 71 2.79e+01 1ckaA b.34.2.1 24513 1vfgA 390 2.81e+01 a.173.1.1,d.218.1.4 108570,108571 1yp2A 451 2.85e+01 2ajuL 216 2.85e+01 1j1lA 290 2.86e+01 b.82.1.12 90766 1auiB 169 2.89e+01 1auiB a.39.1.5 17325 2btfA 375 2.90e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1k3xA 262 3.00e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1dzlA 505 3.00e+01 1dzlA b.121.6.1 23586 1cnzA 363 3.08e+01 1cnzA c.77.1.1 35061 1pm4A 119 3.08e+01 b.135.1.1 94891 1nffA 260 3.10e+01 c.2.1.2 80457 1k3pA 426 3.16e+01 a.103.1.1 77237 1g94A 448 3.19e+01 b.71.1.1,c.1.8.1 65169,65170 1gxrA 337 3.22e+01 b.69.4.1 70722 2a73B 991 3.24e+01 1cs0A 1073 3.33e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1f0iA 504 3.35e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1xtmA 175 3.40e+01 1wp5A 323 3.40e+01 1b65A 375 3.45e+01 1b65A d.154.1.1 42020 1mlbA 214 3.47e+01 8fabA b.1.1.1,b.1.1.2 20050,21092 1h0pA 182 3.55e+01 b.62.1.1 76450 1w6tA 444 3.56e+01 2sak 121 3.60e+01 2sak d.15.5.1 37711 2gtqA 867 3.62e+01 1rlmA 271 3.64e+01 2fr1A 486 3.81e+01 1c30B 382 3.89e+01 c.8.3.1,c.23.16.1 30736,31413 1z2cB 383 3.97e+01 1budA 197 4.08e+01 1atlA d.92.1.9 40328 2bpa1 426 4.10e+01 2bpa1 1y7bA 542 4.19e+01 1v0wA 506 4.21e+01 d.136.1.2,d.136.1.2 108220,108221 1a9xA 1058 4.21e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1ty0A 211 4.21e+01 b.40.2.2,d.15.6.1 107440,107441 1ohlA 342 4.23e+01 c.1.10.3 87035 1iyxA 432 4.55e+01 c.1.11.1,d.54.1.1 83815,83816 1suuA 312 4.60e+01 b.68.10.1 99006 1qorA 327 4.66e+01 1qorA b.35.1.2,c.2.1.1 24766,29782 1p32A 209 4.72e+01 1p32A d.25.1.1 38379 1vj5A 555 4.73e+01 c.108.1.2,c.69.1.11 100799,100800 2b7kA 200 4.76e+01 1q16A 1247 4.77e+01 b.52.2.2,c.81.1.1 95546,95547 1h09A 338 4.78e+01 b.109.1.1,c.1.8.8 83420,83421 1wdyA 285 4.84e+01 2b4gA 317 4.89e+01 2gfoA 396 4.90e+01 1oi0A 124 5.04e+01 c.97.3.1 93045 1ps9A 671 5.06e+01 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1gppA 237 5.10e+01 b.86.1.2 76262 1o7fA 469 5.11e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2gupA 292 5.19e+01 1u7bA 261 5.23e+01 1n8kA 374 5.24e+01 b.35.1.2,c.2.1.1 80298,80299 1qynA 153 5.26e+01 d.33.1.1 96597 1b7yB 785 5.33e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1o5zA 442 5.35e+01 c.59.1.2,c.72.2.2 92530,92531 1zd3A 555 5.40e+01 1onxA 390 5.43e+01 b.92.1.7,c.1.9.13 87176,87177 1mrg 263 5.48e+01 1mrj d.165.1.1 42183 1cdy 178 5.59e+01 1cdy b.1.1.1,b.1.1.3 19719,21658 1gttA 429 5.61e+01 d.177.1.1,d.177.1.1 70529,70530 2fokA 579 5.68e+01 2fokA a.4.5.12,a.4.5.12,a.4.5.12,c.52.1.12 16131,16132,16133,33323 1n0uA 842 5.71e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1gqzA 274 5.75e+01 d.21.1.1,d.21.1.1 83311,83312 1wwcA 118 5.75e+01 1wwcA b.1.1.4 21778 1yi8A 351 5.77e+01 1kk1A 410 5.79e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1ggzA 148 5.82e+01 a.39.1.5 70176 1esiA 262 5.89e+01 1skf e.3.1.1 42682 1hh1A 143 5.98e+01 1gefA c.52.1.18 61036 2f3yA 148 5.99e+01 1el4A 195 6.04e+01 1ej3A a.39.1.5 59453 1g4yR 148 6.07e+01 1cll a.39.1.5 60252 2f2sA 406 6.08e+01 2madH 373 6.11e+01 2bbkH b.69.2.1 27639 1dxrL 273 6.22e+01 6prcL f.26.1.1 43431 1igwA 434 6.23e+01 c.1.12.7 62370 1v5wA 343 6.28e+01 c.37.1.11 108387 1p3dA 475 6.30e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1r8nA 185 6.31e+01 b.42.4.1 104851 1ugpB 226 6.34e+01 b.34.4.4 107832 1ireB 228 6.34e+01 b.34.4.4 76770 2b59B 172 6.37e+01 1bykA 255 6.38e+01 1bykA c.93.1.1 35706 1sotA 320 6.45e+01 b.36.1.4,b.47.1.1 105852,105853 1efyA 350 6.45e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 2a1dD 329 6.47e+01 1ogiA 303 6.51e+01 b.43.4.2,c.25.1.1 92914,92915 1i0dA 332 6.53e+01 1pscA c.1.9.3 61487 1l6sA 323 6.62e+01 c.1.10.3 73627 1mqoA 227 6.81e+01 d.157.1.1 103846 1onwA 390 6.82e+01 b.92.1.7,c.1.9.13 87172,87173 1yo8A 634 6.85e+01 1v7wA 807 6.87e+01 a.102.1.4,b.30.5.3 108411,108412 1yw5A 177 6.88e+01 1e3dA 266 6.94e+01 2frvA e.19.1.1 59188 1e5dA 402 7.04e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1d5rA 324 7.05e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1y71A 130 7.05e+01 1ta8A 332 7.18e+01 1u32A 293 7.33e+01 d.159.1.3 107631 1f0kA 364 7.36e+01 1f0kA c.87.1.2 35465 1fthA 122 7.44e+01 d.150.1.2 60028 2f8lA 344 7.55e+01 2bryA 497 7.58e+01 1kutA 230 7.61e+01 d.143.1.1 73017 1wcgA 464 7.64e+01 1td2A 287 7.74e+01 c.72.1.5 106765 1qfhA 212 7.79e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 1bhe 376 7.84e+01 1bhe b.80.1.3 28030 2d2jA 329 7.86e+01 1jmxB 349 7.96e+01 b.69.2.2 66906 1ri6A 343 7.98e+01 b.69.11.1 97503 1x42A 232 8.02e+01 1poiB 260 8.04e+01 1poiB c.124.1.3 34155 1v4vA 376 8.05e+01 c.87.1.3 100313 1snlA 103 8.05e+01 a.39.1.7 105820 1bpyA 335 8.08e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1mqeA 207 8.08e+01 d.113.1.1 91394 1olsA 400 8.16e+01 c.36.1.11 93331 1kit 757 8.32e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1juvA 193 8.32e+01 c.71.1.1 90912 1jfzA 154 8.34e+01 a.149.1.1 66655 2pvbA 107 8.34e+01 1a75A a.39.1.4 17205 1kdgA 546 8.35e+01 c.3.1.2,d.16.1.1 77337,77338 1udc 338 8.37e+01 1xel c.2.1.2 29785 1a8d 452 8.40e+01 1a8d b.29.1.6,b.42.4.2 24262,25607 1hetA 374 8.42e+01 2ohxA b.35.1.2,c.2.1.1 60975,60976 1wqaA 455 8.44e+01 2bvlA 543 8.46e+01 1go7P 462 8.47e+01 b.80.7.1,d.92.1.6 76245,76246 1hqsA 423 8.49e+01 1iso c.77.1.1 61154 1y42X 392 8.56e+01 2napA 723 8.58e+01 2napA b.52.2.2,c.81.1.1 26926,35334 1j6pA 418 8.59e+01 b.92.1.4,c.1.9.9 77089,77090 1yzyA 413 8.59e+01 1qwnA 1045 8.63e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1fgxA 288 8.64e+01 1fgxA c.68.1.2 34508 1bwzA 274 8.64e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1eylA 186 8.66e+01 1wba b.42.4.1 25593 1s4iA 175 8.71e+01 1qtrA 317 8.74e+01 1qtrA c.69.1.7 34660 1gowA 489 8.78e+01 1qvbA c.1.8.4 28981 2nlrA 234 8.84e+01 2nlrA b.29.1.11 24344 1u9iA 519 8.91e+01 1w3jA 468 8.92e+01 c.1.8.4 109156