# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yvvA 336 1.04e-01 1cskA 71 2.25e-01 1ckaA b.34.2.1 24513 1eonA 245 2.67e-01 1rvaA c.52.1.2 33238 1sx5A 244 3.03e-01 c.52.1.2 99023 1rvaA 244 3.56e-01 1rvaA c.52.1.2 33240 1qwtA 255 3.73e-01 b.26.1.3 96501 1sqjA 789 5.37e-01 b.69.13.1,b.69.13.1 105918,105919 2bbhA 269 5.40e-01 1ov3A 138 7.05e-01 b.34.2.1,b.34.2.1 87451,87452 1kcfA 258 9.47e-01 a.140.2.1,c.55.3.7 68434,68435 1wlpB 138 1.14e+00 1ng2A 193 1.31e+00 b.34.2.1,b.34.2.1 85660,85661 1o94A 729 1.45e+00 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1mv3A 213 1.61e+00 b.34.2.1 91468 2b0mA 393 1.80e+00 1vjvA 415 2.01e+00 d.3.1.9 108632 1pc3A 350 2.27e+00 c.94.1.1 104102 1d3gA 367 2.29e+00 1d3gA c.1.4.1 28600 1j2gA 319 3.22e+00 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1n08A 163 3.42e+00 b.43.5.1 79730 1e3aB 560 3.81e+00 1ajqB 1gk9B 557 3.90e+00 1i7oA 429 3.96e+00 1i7oA d.177.1.1,d.177.1.1 61893,61894 1gttA 429 4.15e+00 d.177.1.1,d.177.1.1 70529,70530 1uumA 372 4.18e+00 c.1.4.1 100010 1wyxA 69 4.31e+00 1zpuA 534 5.97e+00 1twyA 290 6.16e+00 1gcb 454 6.39e+00 3gcb d.3.1.1 37034 2cqeA 98 6.78e+00 1oa4A 222 6.93e+00 b.29.1.11 86731 3gcb 470 7.54e+00 3gcb d.3.1.1 37032 1lk9A 448 7.69e+00 c.67.1.1 78057 1md6A 154 7.87e+00 b.42.1.2 91242 1bb9 115 8.37e+00 1bb9 b.34.2.1 24554 1eajA 126 9.15e+00 1f5wA b.1.1.1 59401 1p5hA 428 9.30e+00 c.123.1.1 87802 1f8gA 384 1.02e+01 1sayA c.2.1.4,c.23.12.2 59695,59696 2ahmE 203 1.09e+01 1u2fA 90 1.09e+01 1u2fA d.58.7.1 39168 1wtaA 275 1.13e+01 1e0cA 271 1.18e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1u3oA 82 1.19e+01 1l7dA 384 1.19e+01 c.2.1.4,c.23.12.2 77774,77775 1pfzA 380 1.21e+01 1smrA b.50.1.2 26881 1yqzA 438 1.24e+01 2bv5A 282 1.28e+01 1i1qA 520 1.42e+01 1qdlA d.161.1.1 61543 1vheA 373 1.44e+01 b.49.3.1,c.56.5.4 100669,100670 1kk1A 410 1.46e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1yf2A 425 1.56e+01 2tmdA 729 1.78e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1j5wA 298 1.90e+01 d.104.1.1 71589 1vi6A 208 1.93e+01 c.23.15.1 100736 1tr7A 164 2.12e+01 2c9aA 259 2.18e+01 1bwzA 274 2.20e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1h6zA 913 2.26e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2bmeA 186 2.28e+01 1djqA 729 2.31e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 2rslA 140 2.37e+01 2rslA c.53.1.1 33345 1cs1A 386 2.38e+01 1ibjA c.67.1.3 34399 1q33A 292 2.48e+01 d.113.1.1 95657 1bs0A 384 2.51e+01 1bs0A c.67.1.4 34490 1paz 123 2.51e+01 1bqk b.6.1.1 22878 1djnA 729 2.55e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 1v97A 1332 2.57e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1fo4A 1332 2.64e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1eaf 243 2.64e+01 1eaf c.43.1.1 32617 1egiA 147 2.72e+01 1eggA d.169.1.1 42331 1vjyA 303 2.76e+01 d.144.1.7 108633 1pot 325 2.80e+01 1pot c.94.1.1 35807 1xq6A 253 2.90e+01 1lmq 129 2.95e+01 3lzt d.2.1.2 36588 1qunB 279 3.08e+01 b.2.3.2,b.2.3.2 22411,22412 1pvxA 194 3.09e+01 1axkA b.29.1.11 24341 1kutA 230 3.18e+01 d.143.1.1 73017 1vd3A 217 3.19e+01 1vqb 87 3.23e+01 1gvp b.40.4.7 25370 1gvp 87 3.25e+01 1gvp b.40.4.7 25369 1viaA 175 3.29e+01 c.37.1.2 100754 2aa4A 289 3.32e+01 2awpA 198 3.44e+01 1an9A 340 3.45e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1klfB 279 3.47e+01 b.2.3.2,b.2.3.2 72684,72685 2cb5A 453 3.53e+01 3gcb d.3.1.1 37035 1uisA 231 3.54e+01 d.22.1.1 99431 2por 301 3.58e+01 2por f.4.3.1 43759 1pm4A 119 3.59e+01 b.135.1.1 94891 1py5A 326 3.71e+01 d.144.1.7 104389 1uwfA 158 3.97e+01 1a53 247 4.03e+01 1a53 c.1.2.4 28564 1jug 125 4.05e+01 3lzt d.2.1.2 36587 1k8kA 418 4.06e+01 c.55.1.1,c.55.1.1 68305,68306 1cjaA 342 4.12e+01 1cjaA d.144.1.3 41708 1l6pA 125 4.12e+01 b.1.17.1 73626 1igs 248 4.16e+01 1a53 c.1.2.4 28565 1vq3A 94 4.20e+01 1ve9A 347 4.33e+01 c.4.1.2,d.16.1.3 100571,100572 1r4pA 297 4.43e+01 d.165.1.2 97025 2fy6A 143 4.48e+01 1gqzA 274 4.59e+01 d.21.1.1,d.21.1.1 83311,83312 1qynA 153 4.60e+01 d.33.1.1 96597 1i7qA 519 4.67e+01 1qdlA d.161.1.1 61901 1cg2A 393 4.72e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1qfoA 119 4.90e+01 1qfoA b.1.1.1 19708 1faoA 126 4.93e+01 1faoA b.55.1.1 26974 1omzA 293 5.03e+01 c.68.1.15 87093 1qqcA 773 5.12e+01 1tgoA c.55.3.5,e.8.1.1 33724,43013 2fmpA 335 5.13e+01 1q7eA 428 5.16e+01 c.123.1.1 96035 1lvmA 229 5.17e+01 b.47.1.3 78243 2fe5A 94 5.19e+01 1p99A 295 5.40e+01 c.94.1.1 94384 1sznA 417 5.43e+01 b.71.1.1,c.1.8.1 106162,106163 1hl9A 449 5.50e+01 b.71.1.3,c.1.8.11 90650,90651 1q45A 391 5.63e+01 c.1.4.1 95780 1a8p 258 5.64e+01 1fdr b.43.4.2,c.25.1.1 25654,31544 1pt7A 437 5.66e+01 c.123.1.1 95093 1jhnA 424 5.77e+01 b.104.1.1,b.29.1.12 66722,70060 4ubpB 126 5.97e+01 1ubpB b.85.3.1 28345 2az4A 429 5.98e+01 2biiA 424 6.05e+01 2gkeA 274 6.13e+01 1uwsA 489 6.15e+01 c.1.8.4 108073 2aq5A 402 6.17e+01 1e0nA 27 6.19e+01 b.72.1.1 27807 1amuA 563 6.25e+01 1amuA e.23.1.1 43351 1lgpA 116 6.27e+01 b.26.1.2 73890 2bnuA 203 6.30e+01 5reqA 727 6.31e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1fl1A 230 6.36e+01 1at3A b.57.1.1 27023 1u24A 337 6.38e+01 1reqA 727 6.44e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 2dg5B 190 6.50e+01 1bag 425 6.58e+01 1bag b.71.1.1,c.1.8.1 27720,28707 1kqfB 294 6.61e+01 d.58.1.5,f.23.22.1 75900,75901 1d02A 202 6.64e+01 1d02A c.52.1.8 33313 1m6dA 214 6.72e+01 d.3.1.1 84849 1oo4A 111 6.82e+01 d.93.1.1 87185 1avwB 171 6.92e+01 1wba b.42.4.1 25599 1jjzA 29 6.92e+01 g.3.3.1 71699 1zcjA 463 6.99e+01 2bgcA 238 7.04e+01 3rabA 169 7.09e+01 1ctqA c.37.1.8 32018 2bijA 305 7.17e+01 2bkaA 242 7.31e+01 1omoA 322 7.35e+01 c.2.1.13 104017 1ukcA 522 7.37e+01 c.69.1.17 107911 2exnA 136 7.41e+01 1gowA 489 7.43e+01 1qvbA c.1.8.4 28981 1aa8A 347 7.64e+01 1an9A 1eb6A 177 7.69e+01 d.92.1.12 64895 2cx1A 187 7.71e+01 1pvmA 184 7.76e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1zs7A 190 7.82e+01 1dq3A 454 7.89e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1y7bA 542 7.91e+01 1xezA 721 7.93e+01 1p9oA 313 8.00e+01 c.72.3.1 94397 1m2oA 768 8.18e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1xdnA 277 8.22e+01 1xzzA 246 8.42e+01 1ahsA 126 8.46e+01 1ahsA b.19.1.1 23794 1ua7A 422 8.66e+01 b.71.1.1,c.1.8.1 107759,107760 1rypE 242 8.71e+01 1rypE d.153.1.4 41936 1iohA 21 8.77e+01 1wyuB 474 8.78e+01 1hxrA 115 8.81e+01 1fwqA b.88.1.1 28392 1zgoA 223 8.88e+01 1ggxA 223 8.88e+01 1ggxA d.22.1.1 38367