# List of top-scoring protein chains for T0319.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ba1A 179 2.09e+00 1weoA 93 3.15e+00 1v87A 114 5.06e+00 g.44.1.1 108422 2bxrA 527 5.10e+00 1zin 217 6.09e+00 1zin c.37.1.1,g.41.2.1 31915,45178 1ottA 465 7.53e+00 f.20.1.1 87425 1vr5A 547 7.77e+00 1h7vA 60 9.69e+00 g.41.5.1 65713 1dx8A 70 1.11e+01 1rb9 g.41.5.1 45243 1jqlB 140 1.16e+01 c.37.1.20 63234 1dl6A 58 1.32e+01 1dl6A g.41.3.1 45207 1rlyA 60 1.32e+01 g.41.3.1 104988 1x4vA 63 1.41e+01 1o5wA 534 1.43e+01 c.3.1.2,d.16.1.5 92520,92521 1vg7A 299 1.49e+01 a.128.1.1 108605 1wl2A 299 1.57e+01 2azlA 299 1.59e+01 1vg6A 299 1.61e+01 a.128.1.1 108604 1wl1A 299 1.67e+01 1v4kA 299 1.70e+01 a.128.1.1 100302 1vg3A 299 1.71e+01 a.128.1.1 108601 1vg4A 299 1.73e+01 a.128.1.1 108602 1wkzA 299 1.74e+01 1v4hA 299 1.75e+01 a.128.1.1 100298 1v4eA 299 1.76e+01 a.128.1.1 100296 1wl0A 299 1.76e+01 1gtvA 214 1.77e+01 c.37.1.1 70537 1v4iA 299 1.78e+01 a.128.1.1 100299 1v4jA 299 1.80e+01 a.128.1.1 100300 1jb0A 755 1.81e+01 1jb0A f.29.1.1 62820 1vg2A 299 1.84e+01 a.128.1.1 108600 1otuA 465 1.96e+01 f.20.1.1 87435 2exyA 473 1.98e+01 1wl3A 299 2.12e+01 2fedA 465 2.16e+01 1otsA 465 2.17e+01 f.20.1.1 87415 2exwA 473 2.18e+01 2ez0A 473 2.41e+01 2fe7A 166 2.41e+01 2cf2B 304 2.56e+01 2cdh4 305 2.60e+01 1nm2A 317 2.62e+01 c.19.1.1,d.58.23.1 80654,80655 1bgxT 832 2.63e+01 1taq a.60.7.1,c.120.1.2,c.55.3.5,e.8.1.1 18083,33353,33699,42992 1taq 832 2.68e+01 1taq a.60.7.1,c.120.1.2,c.55.3.5,e.8.1.1 18082,33352,33698,42991 1z1zA 131 2.84e+01 1af8 86 2.85e+01 2af8 a.28.1.1 16932 1x6hA 86 2.96e+01 1b6fA 159 3.05e+01 1bv1 d.129.3.1 41316 1w9yA 319 3.34e+01 1jssA 224 3.35e+01 d.129.3.2 71844 1jyoE 105 3.38e+01 d.184.1.2 67487 1udeA 195 3.55e+01 b.40.5.1 99208 2cquA 116 3.64e+01 1e5uI 187 3.74e+01 1f00I b.1.14.1,d.169.1.3 22372,42441 1kcw 1046 3.88e+01 1kcw b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 1qibA 161 3.96e+01 1ck7A d.92.1.11 40359 4wbcA 183 4.01e+01 1wba b.42.4.1 25596 1bor 56 4.11e+01 1bor g.44.1.1 45324 1fn0A 186 4.15e+01 1wba b.42.4.1 25595 1eylA 186 4.17e+01 1wba b.42.4.1 25593 1fmzA 186 4.18e+01 1wba b.42.4.1 25594 1xtoA 311 4.27e+01 1wdjA 187 4.29e+01 1it2A 146 4.52e+01 a.1.1.2 66365 1fm4A 159 4.59e+01 1bv1 d.129.3.1 76186 1f00I 282 4.68e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1z6nA 167 4.76e+01 1bez 310 4.78e+01 1b6g c.69.1.8 34666 2eiaA 206 4.81e+01 1eia a.28.3.1,a.73.1.1 16949,18329 1eia 207 4.81e+01 1eia a.28.3.1,a.73.1.1 16951,18331 1mgrA 99 4.86e+01 d.1.1.2 79106 1hdeA 310 4.89e+01 1b6g c.69.1.8 34675 1v5kA 115 5.03e+01 a.40.1.1 108377 2ddhA 661 5.05e+01 1b6g 310 5.07e+01 1b6g c.69.1.8 34661 1ede 310 5.08e+01 1b6g c.69.1.8 34662 1eweA 363 5.24e+01 1fbaA c.1.10.1 29136 2bkhA 814 5.37e+01 1vq0A 302 5.38e+01 1oyzA 280 5.40e+01 a.118.1.16 93775 1ex5A 363 5.52e+01 1fbaA c.1.10.1 29140 1jsdA 319 5.52e+01 b.19.1.2 63258 1vp6A 138 5.54e+01 2bkiA 858 5.54e+01 1u12A 138 5.56e+01 1ewgA 363 5.61e+01 1fbaA c.1.10.1 29128 1ni2A 296 5.70e+01 a.11.2.1,b.55.1.5,d.15.1.4 80525,80526,80527 1f62A 51 5.82e+01 1f62A g.50.1.2 45360 1meyC 87 5.84e+01 2gliA k.12.1.1 46430 1w5hA 33 5.88e+01 h.1.3.1 109178 1wicA 152 6.03e+01 2tsrA 307 6.03e+01 1bkpA d.117.1.1 41043 1mzhA 225 6.15e+01 c.1.10.1 79698 1jr3D 343 6.18e+01 a.80.1.1,c.37.1.20 63251,63252 1u5kA 244 6.29e+01 2cvbA 188 6.31e+01 1qo5A 363 6.63e+01 1fbaA c.1.10.1 29102 2aifA 135 6.64e+01 1dv7A 227 6.67e+01 1dvjA c.1.2.3 28550 1fdjA 363 6.72e+01 1fbaA c.1.10.1 59772 1lp6A 229 6.74e+01 c.1.2.3 74171 1loqA 228 6.74e+01 c.1.2.3 74155 1j4eA 363 6.82e+01 c.1.10.1 66375 2a4eA 215 6.87e+01 6aldA 363 6.87e+01 1fbaA c.1.10.1 29144 1wijA 140 6.89e+01 1dvjA 246 6.93e+01 1dvjA c.1.2.3 28546 1km1A 247 6.93e+01 c.1.2.3 72736 1a3gA 308 6.93e+01 1daaA e.17.1.1 43286 1iyeA 309 6.93e+01 e.17.1.1 83786 1pft 50 6.94e+01 1pft g.41.3.1 45206 1j3kC 328 6.94e+01 d.117.1.1 84072 1km2A 247 6.97e+01 c.1.2.3 72738 1ewdA 363 6.99e+01 1fbaA c.1.10.1 29132 1xdmA 365 7.00e+01 1x1zA 252 7.05e+01 1sxvA 172 7.06e+01 1km0A 247 7.20e+01 c.1.2.3 72732 1zaiA 363 7.21e+01 1adoA 363 7.22e+01 1fbaA c.1.10.1 29124 1ald 363 7.28e+01 1fbaA c.1.10.1 29100 1y1pA 342 7.33e+01 1km4A 247 7.33e+01 c.1.2.3 72740 1losA 224 7.41e+01 c.1.2.3 74157 1klyA 247 7.41e+01 c.1.2.3 72730 1wyoA 159 7.48e+01 1klzA 247 7.50e+01 c.1.2.3 72731 2etlA 228 7.53e+01 1twlA 186 7.64e+01 1f7uA 607 7.66e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1dfuP 94 7.67e+01 1dfuP b.53.1.1 26936 2a66A 113 7.72e+01 1w5kA 34 7.77e+01 h.1.3.1 109186 1x1vA 141 7.81e+01 1kzfA 230 7.87e+01 d.108.1.3 73354 1km6A 247 7.93e+01 c.1.2.3 72742 1qp2A 70 8.03e+01 1pse b.34.4.2 24596 487dN 95 8.04e+01 1dfuP i.1.1.2 45841 2f8oA 100 8.06e+01 2fywA 267 8.15e+01 1ub4A 110 8.18e+01 b.34.6.2 88399 1p3jA 217 8.18e+01 c.37.1.1,g.41.2.1 94022,94023 2fmpA 335 8.30e+01 1f5mA 180 8.52e+01 1f5mB d.110.2.1 40895 1jenA 267 8.52e+01 1jenA 1xq5B 146 8.53e+01 1b4bA 71 8.62e+01 1b4aA d.74.2.1 39718 1rie 129 8.62e+01 1rie b.33.1.1 24427 1vjgA 218 8.70e+01 c.23.10.6 100810 1jcoB 30 8.70e+01 g.1.1.1 66503 1km5A 247 8.89e+01 c.1.2.3 72741