# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wdjA 187 3.65e-01 1zaiA 363 1.43e+00 1oyzA 280 1.92e+00 a.118.1.16 93775 1qzzA 374 2.08e+00 a.4.5.29,c.66.1.12 96719,96720 1vphA 149 2.25e+00 1dkqA 410 2.26e+00 1dklA c.60.1.2 33998 1weoA 93 2.63e+00 1dkmA 410 2.86e+00 1dklA c.60.1.2 34000 2av5A 120 3.18e+00 1yk4A 52 4.37e+00 1u7eB 154 4.46e+00 1vp6A 138 4.48e+00 1uu1A 335 5.43e+00 c.67.1.1 99993 1zin 217 5.54e+00 1zin c.37.1.1,g.41.2.1 31915,45178 2fztA 79 5.61e+00 1rlyA 60 6.10e+00 g.41.3.1 104988 1u5kA 244 6.19e+00 1uz3A 102 6.86e+00 2axwA 134 7.15e+00 1vq0A 302 7.83e+00 1t0aA 159 8.49e+00 2f4mA 295 8.63e+00 2fp1A 166 8.76e+00 1vmfA 145 9.02e+00 1ef8A 261 9.78e+00 1ef8A c.14.1.3 30921 1yua 122 9.79e+00 1yua g.41.3.3,g.41.3.3 45210,45211 1q7lB 88 9.94e+00 1nh1A 330 1.03e+01 e.45.1.1 91871 1u6tA 121 1.09e+01 2cc0A 195 1.15e+01 1vkmA 297 1.16e+01 c.138.1.1 108670 1nm2A 317 1.17e+01 c.19.1.1,d.58.23.1 80654,80655 1ykhA 108 1.22e+01 1epxA 370 1.23e+01 1fbaA c.1.10.1 29150 1aa6 715 1.24e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1vmjA 151 1.29e+01 1x1rA 178 1.29e+01 1a8q 274 1.30e+01 1brt c.69.1.12 34702 1vqqA 646 1.31e+01 1bea 127 1.32e+01 1bea a.52.1.2 17826 1v6zA 228 1.35e+01 1wolA 122 1.35e+01 1cxzB 86 1.38e+01 1cxzB a.2.6.1 15705 1iro 54 1.47e+01 1rb9 g.41.5.1 45223 1q5dA 419 1.50e+01 a.104.1.1 95891 2a8eA 220 1.52e+01 1xdzA 240 1.62e+01 1yhvA 297 1.62e+01 1fp1D 372 1.63e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1ucrA 78 1.78e+01 a.4.5.45 99188 1d8bA 81 1.90e+01 1d8bA a.60.8.1 18094 1dq3A 454 1.91e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1dfuP 94 1.97e+01 1dfuP b.53.1.1 26936 1yz4A 160 2.00e+01 1brfA 53 2.01e+01 1rb9 g.41.5.1 45236 1y8qA 346 2.02e+01 2ccyA 128 2.09e+01 2ccyA a.24.3.2 16544 1ytlA 174 2.11e+01 2a14A 263 2.13e+01 1woyA 500 2.13e+01 1lv7A 257 2.14e+01 c.37.1.20 78232 1ub4A 110 2.17e+01 b.34.6.2 88399 1rb9 53 2.19e+01 1rb9 g.41.5.1 45214 1ohlA 342 2.22e+01 c.1.10.3 87035 1dv1A 449 2.22e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1j2zA 270 2.23e+01 b.81.1.1 90805 1gsa 316 2.35e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1ufbA 127 2.37e+01 a.24.16.3 99331 2awiA 317 2.37e+01 1rdg 53 2.39e+01 1rb9 g.41.5.1 45221 1lkoA 191 2.45e+01 a.25.1.1,g.41.5.1 78063,78064 1wmiA 90 2.45e+01 1yf3A 259 2.46e+01 1xpjA 126 2.53e+01 2b0jA 358 2.55e+01 1rg8A 146 2.56e+01 1alu 186 2.59e+01 1alu a.26.1.1 16826 2basA 431 2.59e+01 1lvaA 258 2.59e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1gp6A 356 2.60e+01 b.82.2.1 65441 1zdzA 302 2.60e+01 1jqlB 140 2.62e+01 c.37.1.20 63234 2bkkA 264 2.64e+01 1vrmA 325 2.65e+01 1hyeA 313 2.66e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1thtA 305 2.68e+01 1thtA c.69.1.13 34711 1z0sA 278 2.69e+01 1ukuA 102 2.75e+01 d.58.5.2 99533 1rqbA 539 2.80e+01 a.5.7.2,c.1.10.5 105057,105058 1bfg 146 2.84e+01 1bfg b.42.1.1 25485 1rdqE 350 2.85e+01 d.144.1.7 97314 1ed1A 135 3.01e+01 1hiwA a.61.1.1 18130 1jyoE 105 3.03e+01 d.184.1.2 67487 1brt 277 3.18e+01 1brt c.69.1.12 34699 3fruA 269 3.23e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1dvpA 220 3.24e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1fp0A 88 3.24e+01 1fp0A g.50.1.2 45361 1ee8A 266 3.25e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1m0wA 491 3.39e+01 c.30.1.4,d.142.1.6 78363,78364 1hx1B 114 3.41e+01 1hx1B a.7.7.1 61350 2bwvA 440 3.41e+01 1rjdA 334 3.41e+01 c.66.1.37 97558 1flcB 175 3.45e+01 1flcB h.3.1.1 45716 1nsj 205 3.46e+01 1nsj c.1.2.4 28560 2czcA 334 3.49e+01 1uz5A 402 3.55e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1j7xA 302 3.56e+01 c.14.1.2 66425 1v54F 98 3.57e+01 g.41.5.3 100327 1wijA 140 3.60e+01 2cb5A 453 3.65e+01 3gcb d.3.1.1 37035 1hl9A 449 3.66e+01 b.71.1.3,c.1.8.11 90650,90651 1zbqA 327 3.66e+01 1wgxA 73 3.68e+01 1y1pA 342 3.69e+01 1neeA 138 3.70e+01 d.241.1.1,g.59.1.1 91841,91842 1yovA 537 3.74e+01 1xuuA 349 3.75e+01 1mgtA 174 3.76e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1zosA 230 3.77e+01 2bkaA 242 3.78e+01 2aa1B 146 3.92e+01 1se0A 116 3.97e+01 g.52.1.1 98814 1nc5A 373 4.01e+01 a.102.1.6 85548 1wmmA 145 4.11e+01 1ixh 321 4.13e+01 1ixh c.94.1.1 35761 1p80A 753 4.19e+01 c.23.16.3,e.5.1.1 94337,94338 2djkA 133 4.20e+01 1w3oA 216 4.22e+01 1xreA 217 4.34e+01 1hl2A 297 4.45e+01 c.1.10.1 83581 1ix9A 205 4.47e+01 a.2.11.1,d.44.1.1 76899,76900 2fnoA 248 4.78e+01 1eaxA 241 4.82e+01 b.47.1.2 64889 1kzfA 230 4.83e+01 d.108.1.3 73354 1ezwA 349 4.90e+01 1ezwA c.1.16.3 29558 1sfxA 109 4.92e+01 a.4.5.50 105505 2az0A 73 4.94e+01 1mh1 186 5.02e+01 1eesA c.37.1.8 32002 1hkhA 279 5.07e+01 c.69.1.12 90628 1ebfA 358 5.15e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1suwA 249 5.19e+01 e.52.1.1 106027 1t7vA 278 5.24e+01 2a8yA 270 5.37e+01 1ro0A 216 5.38e+01 d.264.1.2 97664 1pyoA 167 5.39e+01 c.17.1.1 95370 1xd7A 145 5.41e+01 a.4.5.55 109566 1t77A 414 5.45e+01 1nthA 458 5.47e+01 c.1.25.1 80730 1evlA 401 5.48e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1i60A 278 5.48e+01 c.1.15.4 71118 2etxA 209 5.49e+01 1w9yA 319 5.53e+01 1g4mA 393 5.55e+01 b.1.18.11,b.1.18.11 65143,65144 2g7jA 124 5.57e+01 2fdrA 229 5.63e+01 1wer 334 5.63e+01 1wer a.116.1.2 19108 1xl7A 612 5.79e+01 1jtvA 327 5.90e+01 c.2.1.2 84230 1p4xA 250 5.94e+01 a.4.5.28,a.4.5.28 87784,87785 1xteA 154 5.98e+01 2d69A 430 5.99e+01 1wy6A 172 6.03e+01 2evrA 246 6.04e+01 1s3eA 520 6.07e+01 c.3.1.2,d.16.1.5 98426,98427 1w9pA 433 6.10e+01 1yxmA 303 6.10e+01 2fe5A 94 6.16e+01 1ro2A 216 6.19e+01 d.264.1.2 97665 1wwtA 88 6.45e+01 1mla 309 6.46e+01 1mla c.19.1.1,d.58.23.1 31031,39383 2a8nA 144 6.57e+01 1kwgA 645 6.61e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1o97D 320 6.65e+01 c.26.2.3,c.31.1.2 81233,81234 1dpe 507 6.71e+01 1dpe c.94.1.1 35799 1mzgA 146 6.73e+01 d.224.1.1 79696 1o7nA 449 6.73e+01 b.33.1.2,d.129.3.3 81162,81163 1mr7A 209 6.77e+01 b.81.1.3 91430 1fm4A 159 6.80e+01 1bv1 d.129.3.1 76186 1iyeA 309 6.85e+01 e.17.1.1 83786 2es9A 115 6.87e+01 2f8yA 223 6.91e+01 2c8mA 262 6.96e+01 1qg8A 255 7.00e+01 1qg8A c.68.1.1 34505 1qo3C 137 7.04e+01 1qo3C d.169.1.1 42350 1q77A 138 7.14e+01 c.26.2.4 96023 1ikpA 613 7.18e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1k7cA 233 7.21e+01 c.23.10.4 68267 1i5jA 79 7.21e+01 1i5jA j.39.1.1 61788 1mxmA 254 7.26e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1dqpA 230 7.27e+01 1dqnA c.61.1.1 34069 1ut9A 609 7.28e+01 a.102.1.2,b.1.18.2 99912,99913 1b7yB 785 7.29e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ccwA 137 7.33e+01 1be1 c.23.6.1 31238 1a2zA 220 7.44e+01 1a2zA c.56.4.1 33794 1w33A 181 7.45e+01 1pzgA 331 7.46e+01 c.2.1.5,d.162.1.1 95425,95426 2b3wA 168 7.47e+01 1vhtA 218 7.49e+01 c.37.1.1 100700 2gdm 153 7.52e+01 2gdm a.1.1.2 15212 1si2A 149 7.56e+01 b.34.14.1 105569 1gmuA 143 7.58e+01 b.107.1.1,d.58.38.1 65335,65336 1lucA 355 7.59e+01 1lucA c.1.16.1 29547 1qs1A 462 7.64e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 2carA 196 7.70e+01 1t0iA 191 7.79e+01 c.23.5.4 106209 1n40A 396 7.79e+01 a.104.1.1 79977 1spjA 238 7.86e+01 1m56D 51 7.87e+01 f.23.8.1 74475 1aua 296 7.98e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1eswA 500 7.99e+01 1cwyA c.1.8.1 59500 1qtnA 164 8.06e+01 1pauA c.17.1.1 30999 1txnA 328 8.14e+01 2f8aA 208 8.14e+01 1ykhB 132 8.15e+01 1f00I 282 8.24e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 2f6mB 109 8.31e+01 1vk6A 269 8.34e+01 d.113.1.4,d.113.1.4 100851,100852 2a0b 125 8.40e+01 2a0b a.24.10.1 16630 2cybA 323 8.43e+01 1j8rA 196 8.56e+01 1j8rA b.2.3.3 62745 1cznA 169 8.58e+01 1rcf c.23.5.1 31181 1whnA 128 8.60e+01 1pmi 440 8.64e+01 1pmi b.82.1.3 28114 1nu0A 138 8.65e+01 c.55.3.8 92165 1tm9A 137 8.69e+01 a.225.1.1 107150 1gpmA 525 8.71e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1z8sA 146 8.82e+01 1jr8A 117 8.84e+01 a.24.15.1 67115 1uj8A 77 8.96e+01 2cokA 113 8.96e+01