# List of top-scoring protein chains for T0318.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gytA 503 5.42e-58 c.50.1.1,c.56.5.3 70765,70766 1bllE 488 5.24e-53 1lam c.50.1.1,c.56.5.3 33170,33833 2ewbA 486 5.40e-53 1lam 484 6.01e-53 1lam c.50.1.1,c.56.5.3 33166,33829 1v71A 323 2.39e-01 1ebdA 455 1.90e+00 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1orhA 353 2.52e+00 c.66.1.6 93455 1oriA 343 3.02e+00 c.66.1.6 87339 1or8A 340 3.03e+00 c.66.1.6 93451 2cg9A 677 4.30e+00 1m9iA 672 6.75e+00 a.65.1.1,a.65.1.1 74589,74590 2frnA 278 8.94e+00 1jcmP 259 9.18e+00 c.1.2.4 71633 1usvA 260 9.21e+00 d.14.1.8 99887 1hk7A 288 1.03e+01 d.14.1.8 90626 1usuA 260 1.09e+01 d.14.1.8 99885 2cgeA 405 1.24e+01 1dxy 333 1.25e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1h1yA 228 1.35e+01 c.1.2.2 76506 1v76A 96 2.08e+01 1gpqA 135 2.20e+01 d.233.1.1 83295 1avc 673 2.37e+01 1avc a.65.1.1,a.65.1.1 18178,18179 1dqvA 296 2.47e+01 1rsy b.7.1.2,b.7.1.2 23194,23195 2ccdA 740 2.59e+01 1pii 452 2.64e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1rifA 282 2.72e+01 c.37.1.23 97507 2esvE 240 2.79e+01 2ccaA 740 2.83e+01 1sj2A 743 2.84e+01 a.93.1.3,a.93.1.3 105597,105598 1jl5A 454 2.98e+01 c.10.2.6 66830 2amyA 246 3.09e+01 1y14B 171 3.20e+01 1vpyA 289 3.22e+01 1zczA 464 3.27e+01 2fliA 220 3.33e+01 1vb7A 94 3.82e+01 b.36.1.1 108474 1xs0A 136 3.84e+01 4bcl 366 3.95e+01 4bcl b.75.1.1 27968 1gajA 257 4.01e+01 1gajA c.37.1.12 60416 1szrA 425 4.15e+01 1jqoA 970 4.21e+01 c.1.12.3 77160 2f7wA 177 4.25e+01 2todA 425 4.35e+01 7odcA b.49.2.3,c.1.6.1 26489,28651 1njjA 425 4.38e+01 b.49.2.3,c.1.6.1 91905,91906 1f3tA 425 4.39e+01 7odcA b.49.2.3,c.1.6.1 26493,28655 1q52A 314 4.43e+01 c.14.1.3 95846 2etvA 346 4.50e+01 1l3aA 227 4.72e+01 d.18.1.2 73531 1so8A 261 4.83e+01 c.2.1.2 98940 2es7A 142 4.86e+01 1u7tA 261 4.87e+01 1lrzA 426 5.07e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1x13A 401 5.14e+01 1s1hI 142 5.42e+01 i.1.1.1 105161 2f06A 144 5.64e+01 1bjfA 193 5.64e+01 1rec a.39.1.5 17331 2bdqA 224 5.80e+01 1z2iA 358 5.96e+01 1xruA 282 6.01e+01 1eyvA 156 6.02e+01 1eyvA a.79.1.1 18446 1tz9A 367 6.05e+01 c.1.15.6 107466 1x8mA 288 6.11e+01 b.82.1.13 109516 1izmA 184 6.31e+01 a.199.1.1 90725 1g6hA 257 6.42e+01 1gajA c.37.1.12 60318 1fhwA 129 6.43e+01 1faoA b.55.1.1 26977 1uaxA 220 6.53e+01 c.55.3.1 107764 1g9xA 257 6.57e+01 c.37.1.12 76219 1feuA 206 6.76e+01 1feuA b.53.1.1 59801 1dm1A 146 6.80e+01 2fal a.1.1.2 15153 2ahsA 295 6.86e+01 1u2bA 138 6.87e+01 2agjH 226 6.88e+01 1sviA 195 7.16e+01 c.37.1.8 106048 1vdzA 588 7.38e+01 1h70A 255 7.75e+01 1h70A d.126.1.3 60711 1qz1A 291 8.25e+01 b.1.1.4,b.1.1.4,b.1.1.4 96609,96610,96611 1gw5B 591 8.30e+01 a.118.1.10 70630 1ispA 181 8.39e+01 c.69.1.18 76778 1bba 36 8.81e+01 1bba j.6.1.1 46088 1fgyA 127 8.93e+01 1faoA b.55.1.1 26976