# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lam 484 2.64e-81 1lam c.50.1.1,c.56.5.3 33166,33829 1v71A 323 1.53e-03 1tkjA 284 3.00e-03 1qq9A 284 1.52e-02 1xjo c.56.5.4 33841 1rtqA 299 5.45e-02 c.56.5.4 97819 1ysjA 404 9.48e-01 2ab5A 269 1.57e+00 2av4A 162 2.09e+00 1kb9D 246 2.40e+00 a.3.1.3,f.23.11.1 77317,77318 1x13A 401 2.44e+00 1cg2A 393 3.26e+00 1cg2A c.56.5.4,d.58.19.1 33844,39360 2b0oE 301 3.67e+00 1omrA 201 4.09e+00 a.39.1.5 93349 1gc0A 398 4.35e+00 c.67.1.3 70168 1fc4A 401 4.50e+00 1bs0A c.67.1.4 59760 1j6rA 214 4.69e+00 d.173.1.2 71598 1u9yA 284 5.11e+00 1ve1A 304 5.85e+00 1z0sA 278 6.23e+00 1csn 298 6.57e+00 1csn d.144.1.7 41664 1suwA 249 6.93e+00 e.52.1.1 106027 2avdA 219 6.99e+00 1i9zA 347 7.18e+00 1i9yA d.151.1.2 62102 1l1eA 287 7.89e+00 c.66.1.18 73454 1rp4A 389 8.40e+00 a.227.1.1 105027 1izmA 184 8.89e+00 a.199.1.1 90725 1u6zA 513 8.93e+00 2c2aA 258 9.46e+00 1scfA 273 9.62e+00 1exzA a.26.1.2 16873 1x9iA 302 9.83e+00 2aawA 222 9.98e+00 1li4A 432 1.09e+01 c.2.1.4,c.23.12.3 84616,84617 1h1yA 228 1.09e+01 c.1.2.2 76506 2frnA 278 1.09e+01 3tdt 274 1.17e+01 3tdt b.81.1.2 28053 1pn0A 665 1.17e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1dceB 331 1.32e+01 1dceB a.102.4.3 18872 1ixcA 294 1.33e+01 a.4.5.37,c.94.1.1 83764,83765 1j1bA 420 1.34e+01 d.144.1.7 90758 1vljA 407 1.42e+01 e.22.1.2 108832 1zosA 230 1.48e+01 1tqxA 227 1.48e+01 1jndA 420 1.61e+01 c.1.8.5,d.26.3.1 71757,71758 2cy7A 396 1.65e+01 1dxy 333 1.69e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1b7yB 785 2.16e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ppjD 241 2.19e+01 a.3.1.3,f.23.11.1 104258,104259 1qo7A 394 2.22e+01 1qo7A c.69.1.11 34697 2fliA 220 2.23e+01 1hqz1 141 2.27e+01 1cl8A 276 2.30e+01 1ckqA c.52.1.1 33230 1woqA 267 2.31e+01 c.55.1.10,c.55.1.10 109462,109463 1qgvA 142 2.34e+01 1qgvA c.47.1.8 33056 1cvl 319 2.40e+01 1cvl c.69.1.18 34786 1xhkA 187 2.44e+01 1wlsA 328 2.47e+01 2awfA 172 2.55e+01 1o0xA 262 2.67e+01 d.127.1.1 80755 1n1bA 549 2.70e+01 a.102.4.1,a.128.1.3 79799,79800 1fg7A 356 2.76e+01 1gewA c.67.1.1 59819 1a8q 274 2.84e+01 1brt c.69.1.12 34702 1elvA 333 2.92e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1wl8A 189 2.92e+01 1em8B 112 2.95e+01 c.126.1.1 90458 1zanH 224 2.97e+01 1wwpA 119 3.00e+01 1w7bA 339 3.05e+01 1vcc 77 3.09e+01 1vcc d.121.1.1 41092 2cw8A 537 3.09e+01 1oktA 211 3.13e+01 a.45.1.1,c.47.1.5 93272,93273 1xd8A 289 3.16e+01 1a41 234 3.20e+01 1a41 d.163.1.2 42174 1rgzA 363 3.38e+01 e.3.1.1 97457 1zhhB 242 3.64e+01 1qj4A 257 3.68e+01 1qj4A c.69.1.20 34796 1tl9A 339 3.70e+01 1vl4A 447 3.71e+01 d.283.1.1 108718 1ugmA 125 3.74e+01 d.15.1.3 107827 1mslA 109 3.82e+01 1mslA f.16.1.1 43660 1tm9A 137 3.86e+01 a.225.1.1 107150 1b3tA 147 4.00e+01 1b3tA d.58.8.1 39228 1i8fA 81 4.06e+01 1i8fA b.38.1.1 61959 1ispA 181 4.15e+01 c.69.1.18 76778 2ajrA 331 4.21e+01 2b9hA 353 4.33e+01 1w61A 414 4.40e+01 1p99A 295 4.55e+01 c.94.1.1 94384 1fcdA 401 4.56e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1owcA 427 4.56e+01 a.103.1.1 104039 2absA 383 4.65e+01 1el5A 389 4.68e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1fm0E 150 4.72e+01 1fmaE d.41.5.1 38629 1yqtA 538 4.88e+01 1vgyA 393 4.95e+01 c.56.5.4,d.58.19.1 100620,100621 1w0pA 781 5.29e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1m4lA 307 5.31e+01 c.56.5.1 78604 1gen 218 5.32e+01 1gen b.66.1.1 27536 2fuqA 747 5.40e+01 1i5nA 146 5.41e+01 1i5nA a.24.10.3 61805 2d0iA 333 5.73e+01 1ybzA 91 5.76e+01 1vi2A 300 5.80e+01 c.2.1.7,c.58.1.5 100726,100727 1qnxA 209 5.84e+01 1qnxA d.111.1.1 40914 1v54B 227 6.07e+01 b.6.1.2,f.17.2.1 100322,100323 1ys1X 320 6.08e+01 1axn 323 6.10e+01 1avc a.65.1.1 18149 2bu3A 254 6.21e+01 1pmmA 466 6.22e+01 c.67.1.6 94901 2bolA 314 6.24e+01 1in6A 334 6.33e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1qxyA 252 6.38e+01 d.127.1.1 96565 1ct5A 256 6.47e+01 1ct5A c.1.6.2 28663 1khdA 345 6.72e+01 a.46.2.1,c.27.1.1 77400,77401 1nbaA 264 6.75e+01 1nbaA c.33.1.3 31753 1fp3A 402 6.78e+01 1fp3A a.102.1.3 18842 1i6pA 220 6.86e+01 1ddzA c.53.2.1 61848 1x67A 146 6.88e+01 1v0jA 399 6.93e+01 1bcpF 99 7.05e+01 1prtF b.40.2.1 25142 1z9lA 128 7.07e+01 1d0cA 444 7.13e+01 d.174.1.1 64769 1sviA 195 7.16e+01 c.37.1.8 106048 1kid 203 7.26e+01 1derA c.8.5.1 30771 1mgqA 83 7.36e+01 b.38.1.1 79099 1vddA 228 7.42e+01 e.49.1.1 108519 2cfxA 144 7.48e+01 2f1fA 164 7.57e+01 1q9rB 222 7.71e+01 b.1.1.1,b.1.1.2 96307,96308 1d3bB 91 7.84e+01 1d3bB b.38.1.1 24804 1j4aA 333 7.93e+01 c.2.1.4,c.23.12.1 71502,71503 1nytA 271 7.97e+01 c.2.1.7,c.58.1.5 86417,86418 2ajuH 219 7.98e+01 2gkeA 274 8.05e+01 1io7A 368 8.09e+01 1f4tA a.104.1.1 18971 2fvgA 340 8.19e+01 1v0wA 506 8.20e+01 d.136.1.2,d.136.1.2 108220,108221 2bsjA 133 8.27e+01 1uayA 242 8.28e+01 c.2.1.2 88390 1in4A 334 8.29e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1jysA 242 8.40e+01 c.56.2.1 77216 1thg 544 8.49e+01 1thg c.69.1.17 34763 1r89A 437 8.54e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1nnlA 225 8.61e+01 c.108.1.4 85906 2culA 232 8.65e+01 1b4pA 217 8.66e+01 a.45.1.1,c.47.1.5 83158,83159 2audA 257 8.67e+01 1m7yA 435 8.90e+01 c.67.1.4 78761