# List of top-scoring protein chains for T0318.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gytA 503 1.11e-67 c.50.1.1,c.56.5.3 70765,70766 1bllE 488 5.91e-63 1lam c.50.1.1,c.56.5.3 33170,33833 2ewbA 486 6.29e-63 1lam 484 7.07e-63 1lam c.50.1.1,c.56.5.3 33166,33829 1v71A 323 3.45e-01 1orhA 353 3.59e+00 c.66.1.6 93455 1ebdA 455 3.66e+00 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1uaxA 220 3.97e+00 c.55.3.1 107764 1oriA 343 4.62e+00 c.66.1.6 87339 1or8A 340 4.78e+00 c.66.1.6 93451 1gpqA 135 5.02e+00 d.233.1.1 83295 2etvA 346 8.51e+00 1jl5A 454 1.01e+01 c.10.2.6 66830 1xs0A 136 1.16e+01 1fc0A 846 1.29e+01 1a8i c.87.1.4 35473 1xoiA 846 1.29e+01 1l5sA 847 1.29e+01 c.87.1.4 77716 1z8dA 842 1.37e+01 1bjfA 193 1.41e+01 1rec a.39.1.5 17331 1m9iA 672 1.43e+01 a.65.1.1,a.65.1.1 74589,74590 2frnA 278 1.52e+01 1sjiA 350 1.54e+01 2f06A 144 1.63e+01 1lrzA 426 1.65e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1szrA 425 1.80e+01 1ys1X 320 1.82e+01 1fpwA 190 1.93e+01 1rec a.39.1.5 17329 2todA 425 1.99e+01 7odcA b.49.2.3,c.1.6.1 26489,28651 1g61A 228 2.08e+01 1g61A d.126.1.1 41126 1f3tA 425 2.15e+01 7odcA b.49.2.3,c.1.6.1 26493,28655 1njjA 425 2.15e+01 b.49.2.3,c.1.6.1 91905,91906 2b8wA 328 2.16e+01 2bylA 439 2.33e+01 1up8A 598 2.75e+01 a.111.1.2 99710 1yq2A 1024 2.83e+01 1izmA 184 2.86e+01 a.199.1.1 90725 1r5iD 216 3.11e+01 a.202.1.1 97091 1abbA 828 3.22e+01 1a8i c.87.1.4 35536 1xc7A 842 3.22e+01 1c50A 830 3.26e+01 1a8i c.87.1.4 35512 1h5uA 842 3.26e+01 1a8i c.87.1.4 60655 1dxy 333 3.33e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1noj 842 3.44e+01 1a8i c.87.1.4 35479 2av4A 160 3.54e+01 1xvyA 309 3.63e+01 1tz9A 367 3.92e+01 c.1.15.6 107466 1o17A 345 4.00e+01 a.46.2.1,c.27.1.1 80765,80766 1vb7A 94 4.08e+01 b.36.1.1 108474 1vfsA 386 4.08e+01 b.49.2.2,c.1.6.1 108584,108585 1v76A 96 4.09e+01 2es7A 142 4.12e+01 1fhwA 129 4.56e+01 1faoA b.55.1.1 26977 1l2uA 245 4.57e+01 c.1.2.3 73516 2fliA 220 4.70e+01 1x13A 401 4.70e+01 2bbjA 354 4.95e+01 1jeyB 565 5.08e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1r4vA 171 5.12e+01 a.197.1.1 97049 1f1bA 310 5.18e+01 3csuA c.78.1.1,c.78.1.1 35104,35105 1ispA 181 5.22e+01 c.69.1.18 76778 1h1yA 228 5.33e+01 c.1.2.2 76506 1u2bA 138 5.53e+01 1dm1A 146 5.70e+01 2fal a.1.1.2 15153 1jcmP 259 5.94e+01 c.1.2.4 71633 1vl0A 292 5.95e+01 c.2.1.2 108704 1t4mA 181 5.96e+01 2aqjA 538 6.42e+01 1kb0A 677 6.52e+01 a.3.1.6,b.70.1.1 68378,68379 3tss 194 6.53e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 2gi3A 476 6.53e+01 8pchA 220 6.71e+01 1cs8A 1y9uA 323 6.77e+01 1vdzA 588 6.80e+01 1mj1A 405 6.90e+01 i.1.1.1 79175 1rvkA 382 6.96e+01 c.1.11.2,d.54.1.1 97928,97929 2f7wA 177 7.01e+01 1tugA 310 7.17e+01 c.78.1.1 107339 1u4nA 310 7.18e+01 3csuA 310 7.24e+01 3csuA c.78.1.1,c.78.1.1 35094,35095 1ekxA 311 7.25e+01 3csuA c.78.1.1,c.78.1.1 35088,35089 1gq3A 310 7.26e+01 c.78.1.1,c.78.1.1 76268,76269 1qgeE 97 7.44e+01 1cvl 1iznA 286 7.59e+01 e.43.1.1 83847 2esvE 240 7.60e+01 9atcA 310 7.62e+01 3csuA c.78.1.1,c.78.1.1 35188,35189 2ccdA 740 7.64e+01 1feuA 206 7.66e+01 1feuA b.53.1.1 59801 1jjoC 261 7.67e+01 1wznA 252 7.74e+01 1avc 673 8.32e+01 1avc a.65.1.1,a.65.1.1 18178,18179 1xqgA 389 8.43e+01 2ccaA 740 8.69e+01 1sj2A 743 8.72e+01 a.93.1.3,a.93.1.3 105597,105598 1t2nA 181 8.74e+01 1xjwA 310 8.83e+01 1bba 36 8.88e+01 1bba j.6.1.1 46088 1smaA 588 8.98e+01 1bvzA b.1.18.2,b.71.1.1,c.1.8.1 21854,27781,28768