# List of top-scoring protein chains for T0318.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vf5C 289 4.19e+00 b.2.6.1,b.84.2.2,f.23.23.1 100580,100581,100582 1o5hA 214 5.56e+00 a.191.1.1 92497 1um8A 376 5.58e+00 c.37.1.20 99580 1r5tA 142 7.18e+00 c.97.1.1 104812 1pjzA 203 8.17e+00 c.66.1.36 94794 1zelA 298 9.17e+00 1ymqA 261 9.18e+00 2bycA 137 9.18e+00 1rhcA 330 9.34e+00 c.1.16.3 97468 1ecfA 504 1.07e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2c9cA 265 1.08e+01 1xccA 220 1.10e+01 1ze3D 125 1.14e+01 1tu2B 254 1.15e+01 1t36B 382 1.20e+01 c.8.3.1,c.23.16.1 106307,106308 1dfoA 417 1.21e+01 1bj4A c.67.1.4 34480 1eqbA 417 1.21e+01 1bj4A c.67.1.4 34484 2c7lB 172 1.24e+01 1keeB 382 1.32e+01 c.8.3.1,c.23.16.1 68498,68499 1c30B 382 1.34e+01 c.8.3.1,c.23.16.1 30736,31413 1i7zA 219 1.35e+01 b.1.1.1,b.1.1.2 61919,61920 1m6vB 382 1.36e+01 c.8.3.1,c.23.16.1 74542,74543 1a9xB 379 1.37e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1jdbC 382 1.39e+01 c.8.3.1,c.23.16.1 30756,31433 1cs0B 382 1.40e+01 1c3oB c.8.3.1,c.23.16.1 30740,31417 2bjvA 265 1.40e+01 2bjwA 265 1.41e+01 2al7A 186 1.45e+01 1cf5A 249 1.46e+01 1mrj d.165.1.1 42191 1d8vA 263 1.51e+01 1mrj d.165.1.1 42193 1s7iA 124 1.77e+01 d.58.4.9 105353 2fyiA 228 1.81e+01 2gtrA 261 1.86e+01 1kn3A 183 1.88e+01 b.17.1.1 72764 1n2tA 386 2.01e+01 c.67.1.3 79858 1eluA 390 2.05e+01 1elqA c.67.1.3 34434 1zd9A 188 2.11e+01 2h18A 193 2.12e+01 2br2A 275 2.18e+01 1i2mB 402 2.27e+01 1a12A b.69.5.1 61569 1a12A 413 2.46e+01 1a12A b.69.5.1 27663 1ti8A 314 2.62e+01 2bwuA 440 2.84e+01 1y6jA 318 2.91e+01 1a44 185 2.93e+01 1a44 b.17.1.1 23704 1b7aA 186 2.94e+01 1a44 b.17.1.1 23705 1vl5A 260 3.00e+01 c.66.1.41 108720 1f5aA 513 3.10e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1q79A 514 3.11e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1yq9A 264 3.16e+01 1vaeA 111 3.16e+01 b.36.1.1 108466 1yoaA 159 3.26e+01 1frvA 264 3.27e+01 2frvA e.19.1.1 43308 2a6aA 218 3.30e+01 1twlA 186 3.35e+01 1x6fA 88 3.40e+01 1u8zA 168 3.63e+01 1k4mA 213 3.64e+01 c.26.1.3 77258 1zc3A 175 3.64e+01 1cc1S 283 3.65e+01 2frvA e.19.1.1 43313 1rtu 114 3.66e+01 9rnt d.1.1.4 36139 1uadA 175 3.75e+01 c.37.1.8 88377 1i7nA 309 3.81e+01 c.30.1.5,d.142.1.3 83681,83682 1v2yA 105 3.85e+01 d.15.1.1 100275 2a9kA 187 3.98e+01 1gydB 315 4.04e+01 b.67.2.1 70751 1whyA 97 4.12e+01 2bovA 206 4.26e+01 1gyeB 315 4.36e+01 b.67.2.1 70752 1gyhA 318 4.48e+01 b.67.2.1 70757 1behA 187 4.52e+01 1a44 b.17.1.1 23700 1wfxA 186 4.54e+01 1gcjA 460 4.56e+01 1qgrA a.118.1.1 19125 1mv8A 436 4.63e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1oedE 260 4.64e+01 f.36.1.1 86915 1a1vA 476 4.87e+01 1heiA c.37.1.14,c.37.1.14 32467,32468 1f59A 442 4.92e+01 1qgrA a.118.1.1 19123 1ibrB 462 5.07e+01 1qgrA a.118.1.1 19120 1m5nS 485 5.15e+01 a.118.1.1 78653 1ub0A 258 5.24e+01 c.72.1.2 88394 1heiA 451 5.39e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1v1aA 309 5.49e+01 c.72.1.1 100249 2ceyA 306 5.49e+01 1f0iA 504 5.57e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1ycdA 243 5.68e+01 1mabG 270 5.75e+01 1e1qG c.49.2.1 33165 2f43G 273 5.80e+01 1yyaA 250 5.84e+01 2c5mA 294 5.85e+01 1rc6A 261 5.90e+01 b.82.1.11 97287 1njgA 250 6.04e+01 c.37.1.20 85785 1xk8A 147 6.13e+01 1c2pA 576 6.19e+01 1quvA e.8.1.4 43117 1ihgA 370 6.24e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1pzvA 164 6.42e+01 d.20.1.1 88342 1tme2 267 6.60e+01 1aym2 1oscA 126 6.71e+01 d.58.5.2 93490 1vbgA 876 6.75e+01 1t0hB 224 6.76e+01 c.37.1.1 106208 1har 216 6.87e+01 1rthA e.8.1.2 43025 1ro8A 262 7.06e+01 c.130.1.1 97671 1ymnA 124 7.16e+01 1t91A 207 7.26e+01 1ghtA 105 7.33e+01 2rslA c.53.1.1 60526 1yb5A 351 7.45e+01 2cts 437 7.55e+01 1csh a.103.1.1 18896 1cts 437 7.72e+01 1csh a.103.1.1 18897 1vg1A 185 7.87e+01 c.37.1.8 108599 1n8tA 557 7.98e+01 c.80.1.2 85454 1c9xA 124 8.00e+01 7rsa d.5.1.1 59090 1kojA 557 8.11e+01 c.80.1.2 72821 1ffuC 287 8.11e+01 1qj2C d.87.2.1,d.145.1.3 40225,41756 1hm5A 558 8.13e+01 c.80.1.2 76717 1vg8A 207 8.24e+01 c.37.1.8 108606 1ffvC 287 8.52e+01 1qj2C d.87.2.1,d.145.1.3 40223,41754 4rsd 124 8.61e+01 7rsa d.5.1.1 37186 1ow3B 193 8.76e+01 c.37.1.8 87486 1xxiB 368 8.80e+01 1ako 268 8.82e+01 1ako d.151.1.1 41779