# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zq1A 438 2.02e+00 1aoxA 203 2.54e+00 1aoxA c.62.1.1 34151 1kuxA 207 4.44e+00 d.108.1.1 73021 1ogiA 303 4.72e+00 b.43.4.2,c.25.1.1 92914,92915 1a9xB 379 5.07e+00 1c3oB c.8.3.1,c.23.16.1 30732,31409 1fnd 314 5.30e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 2bsaA 303 5.79e+00 1w2fA 276 5.91e+00 d.143.1.3 109125 1fnc 314 6.15e+00 1fnc b.43.4.2,c.25.1.1 25627,31517 1v7pC 200 6.16e+00 c.62.1.1 108408 1w34A 304 6.70e+00 1jb9A 316 6.77e+00 1fnc b.43.4.2,c.25.1.1 62840,62841 1b2rA 304 6.81e+00 1fnc b.43.4.2,c.25.1.1 25648,31538 1go2A 304 6.91e+00 b.43.4.2,c.25.1.1 76243,76244 1qh0A 295 7.05e+00 b.43.4.2,c.25.1.1 68891,68892 1que 303 7.05e+00 1fnc b.43.4.2,c.25.1.1 25647,31537 1a8p 258 8.51e+00 1fdr b.43.4.2,c.25.1.1 25654,31544 1cjwA 166 9.17e+00 1cjwA d.108.1.1 40818 1c3oB 382 1.15e+01 1c3oB c.8.3.1,c.23.16.1 30744,31421 1qg0A 308 1.17e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1cs0B 382 1.20e+01 1c3oB c.8.3.1,c.23.16.1 30740,31417 1ao3A 187 1.27e+01 1atzA c.62.1.1 34134 1o5hA 214 1.27e+01 a.191.1.1 92497 2c2hA 192 1.39e+01 2b5oA 402 1.40e+01 1j5sA 463 1.43e+01 c.1.9.8 71580 1kmqA 184 1.46e+01 c.37.1.8 84412 1yyaA 250 1.48e+01 1fe8A 196 1.59e+01 1atzA c.62.1.1 59783 1tx4B 178 1.63e+01 1ctqA c.37.1.8 32045 2azpA 318 1.77e+01 1kbpA 432 1.83e+01 4kbpA b.1.12.1,d.159.1.1 22349,42068 1zwwA 256 1.83e+01 1tc1A 220 1.85e+01 1tc1A c.61.1.1 34083 1atzB 189 1.85e+01 1atzA c.62.1.1 34133 1c30B 382 1.92e+01 c.8.3.1,c.23.16.1 30736,31413 1iueA 98 2.07e+01 d.15.4.1 90697 1gtdA 85 2.16e+01 d.284.1.1 76344 1czpA 98 2.20e+01 1awd d.15.4.1 37645 1b37A 472 2.25e+01 1b37B c.3.1.2,d.16.1.5 30389,37953 1b37B 472 2.26e+01 1b37B c.3.1.2,d.16.1.5 30390,37954 1elqA 390 2.27e+01 1elqA c.67.1.3 34436 1b6bA 174 2.29e+01 1cjwA d.108.1.1 40819 1tqyB 415 2.44e+01 c.95.1.1,c.95.1.1 107247,107248 1ihgA 370 2.44e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1icrA 217 2.46e+01 1vfrA d.90.1.1 62274 1fnb 314 2.48e+01 1fnc b.43.4.2,c.25.1.1 25628,31518 1zd9A 188 2.52e+01 1atzA 189 2.54e+01 1atzA c.62.1.1 34132 1x11A 172 2.66e+01 1x11A b.55.1.2 26985 1bx1A 314 2.68e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1eluA 390 2.84e+01 1elqA c.67.1.3 34434 3nul 130 2.93e+01 3nul d.110.1.1 40891 4kbpA 432 3.04e+01 4kbpA b.1.12.1,d.159.1.1 22345,42064 1uarA 285 3.08e+01 c.46.1.2,c.46.1.2 107762,107763 1rm4A 337 3.08e+01 c.2.1.3,d.81.1.1 105000,105001 1eluB 390 3.09e+01 1elqA c.67.1.3 34435 1wn2A 121 3.24e+01 1b7aA 186 3.36e+01 1a44 b.17.1.1 23705 1zelA 298 3.42e+01 1ykiA 217 3.59e+01 1rljA 139 3.74e+01 c.23.5.7 104983 1a70 97 3.88e+01 1awd d.15.4.1 37678 2ki5A 366 3.89e+01 1qhiA c.37.1.1 31862 1lxjA 104 3.90e+01 d.58.48.1 84736 1chrA 370 4.04e+01 1mucA c.1.11.2,d.54.1.1 29252,38896 1a0k 131 4.22e+01 3nul d.110.1.1 40892 1bsmA 201 4.24e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1jztA 246 4.27e+01 c.104.1.1 63319 2ceyA 306 4.32e+01 1avmA 201 4.33e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1mbxC 106 4.33e+01 d.45.1.2 78929 2bl0C 142 4.36e+01 1u8zA 168 4.38e+01 1aqjA 421 4.43e+01 2admA c.66.1.27 34242 2bijA 305 4.45e+01 1awd 94 4.46e+01 1awd d.15.4.1 37673 1se0A 116 4.52e+01 g.52.1.1 98814 1k87A 669 4.56e+01 a.176.1.1,c.1.23.2 77286,77287 1a44 185 4.59e+01 1a44 b.17.1.1 23704 1v37A 177 4.69e+01 1aqcA 172 4.77e+01 1x11A b.55.1.2 26983 1iqpA 327 4.83e+01 a.80.1.1,c.37.1.20 62649,62650 1jkmA 358 4.86e+01 1jkmA c.69.1.2 34633 1v8gA 329 4.97e+01 a.46.2.1,c.27.1.1 100505,100506 1dujA 187 4.97e+01 1dujA d.135.1.1 41449 1b1cA 181 5.00e+01 1amoA c.23.5.2 31212 1e9lA 377 5.02e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1dfaA 454 5.08e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1r5rA 119 5.14e+01 a.39.2.1 97104 2fh7A 595 5.22e+01 2admA 421 5.27e+01 2admA c.66.1.27 34238 1r6oC 106 5.51e+01 2f1fA 164 5.61e+01 1ze3D 125 5.79e+01 1b5qA 472 5.79e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 2fbhA 146 5.83e+01 2a9kA 187 5.95e+01 1yb5A 351 6.11e+01 1kimA 366 6.13e+01 1qhiA c.37.1.1 31864 1e9rA 437 6.16e+01 c.37.1.11 64827 1qpsA 261 6.25e+01 1ckqA c.52.1.1 33234 1vg8A 207 6.33e+01 c.37.1.8 108606 1de4C 640 6.54e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1jg8A 347 6.62e+01 1jg8A c.67.1.1 62946 1m6sA 347 6.62e+01 c.67.1.1 78701 1qd1A 325 6.65e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1offA 97 6.69e+01 d.15.4.1 86947 1ffkO 154 6.72e+01 1ffkO d.55.1.1 38899 1z98A 281 7.06e+01 1yt3A 375 7.13e+01 2fn4A 181 7.16e+01 1uqvA 85 7.29e+01 a.60.1.2 99798 1behA 187 7.38e+01 1a44 b.17.1.1 23700 1gq6A 313 7.43e+01 c.42.1.1 70341 2aq4A 434 7.46e+01 1gadO 330 7.50e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1qxyA 252 7.51e+01 d.127.1.1 96565 1ek4A 418 7.58e+01 1dd8A c.95.1.1,c.95.1.1 59436,59437 1oaoC 729 7.67e+01 e.26.1.3 86746 1icwA 72 7.67e+01 1tvxA d.9.1.1 37357 3fib 249 7.68e+01 3fib d.171.1.1 42455 1rfkA 98 7.73e+01 1qt9A 98 7.76e+01 1awd d.15.4.1 37647 2f8aA 208 7.79e+01 1fib 269 7.82e+01 3fib d.171.1.1 42456 1j2zA 270 7.94e+01 b.81.1.1 90805 1fzqA 181 8.03e+01 1hurA c.37.1.8 32060 1eetB 427 8.08e+01 1rthA e.8.1.2 43079 1dywA 173 8.29e+01 2cpl b.62.1.1 27505 1v2yA 105 8.31e+01 d.15.1.1 100275 1j5eB 256 8.34e+01 c.23.15.1 71543 1hfc 169 8.53e+01 1hfc d.92.1.11 40335 1kncA 177 8.72e+01 a.152.1.1 68703 1i0lA 221 8.86e+01 c.61.1.1 71096