# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o5hA 214 2.01e-01 a.191.1.1 92497 1um8A 376 3.09e-01 c.37.1.20 99580 1a12A 413 1.26e+00 1a12A b.69.5.1 27663 1r5rA 119 1.36e+00 a.39.2.1 97104 1yyaA 250 1.36e+00 2bijA 305 1.45e+00 1eluA 390 1.78e+00 1elqA c.67.1.3 34434 1eluB 390 1.89e+00 1elqA c.67.1.3 34435 2cy2A 174 1.92e+00 1rhcA 330 2.30e+00 c.1.16.3 97468 2bv5A 282 2.40e+00 1ynfA 458 2.89e+00 1yb2A 275 3.23e+00 1a1vA 476 3.36e+00 1heiA c.37.1.14,c.37.1.14 32467,32468 2gtrA 261 3.75e+00 2cw9A 194 3.93e+00 1k4mA 213 3.98e+00 c.26.1.3 77258 1ecfB 504 4.19e+00 1ecfB c.61.1.1,d.153.1.1 34054,41821 1elqA 390 4.38e+00 1elqA c.67.1.3 34436 1ecfA 504 4.74e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1hzdA 272 5.24e+00 c.14.1.3 65969 1e5pA 151 5.90e+00 1bj7 b.60.1.1 59272 1pjzA 203 5.91e+00 c.66.1.36 94794 1s7iA 124 5.91e+00 d.58.4.9 105353 1yoaA 159 6.01e+00 1rznA 205 6.98e+00 1zbpA 273 7.75e+00 1cpzA 68 7.82e+00 1aw0 d.58.17.1 39351 1vg8A 207 7.85e+00 c.37.1.8 108606 1ve3A 227 8.61e+00 1zp7A 206 8.78e+00 1wgbA 159 8.93e+00 1r5tA 142 9.05e+00 c.97.1.1 104812 2occA 514 9.20e+00 2occA f.24.1.1 43518 1wn2A 121 9.75e+00 1h6hA 143 1.00e+01 d.189.1.1 65681 2ceyA 306 1.04e+01 1zelA 298 1.11e+01 1v54A 514 1.15e+01 f.24.1.1 100321 1xklA 273 1.16e+01 1gyhA 318 1.16e+01 b.67.2.1 70757 1gydB 315 1.18e+01 b.67.2.1 70751 1gvfA 286 1.18e+01 c.1.10.2 70599 1qlpA 394 1.19e+01 1ovaA e.1.1.1 42628 1b7aA 186 1.20e+01 1a44 b.17.1.1 23705 1hyeA 313 1.23e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1dujA 187 1.24e+01 1dujA d.135.1.1 41449 2bjvA 265 1.29e+01 1svsA 353 1.33e+01 c.37.1.8 106051 1ko3A 230 1.36e+01 d.157.1.1 90974 1jhsA 188 1.37e+01 d.107.1.1 84172 1u8zA 168 1.40e+01 1i85A 110 1.50e+01 1i85A b.1.1.1 61946 1yb5A 351 1.60e+01 1a44 185 1.62e+01 1a44 b.17.1.1 23704 3fib 249 1.70e+01 3fib d.171.1.1 42455 1aqcA 172 1.74e+01 1x11A b.55.1.2 26983 1m1fA 110 1.74e+01 b.34.6.2 78401 1mh1 186 1.78e+01 1eesA c.37.1.8 32002 1behA 187 1.83e+01 1a44 b.17.1.1 23700 2fibA 269 1.84e+01 3fib d.171.1.1 42457 1i7nA 309 1.85e+01 c.30.1.5,d.142.1.3 83681,83682 2a9kA 187 1.87e+01 1xx4A 261 1.88e+01 2evwX 166 1.89e+01 1j5sA 463 1.90e+01 c.1.9.8 71580 1zd9A 188 1.92e+01 1x11A 172 1.93e+01 1x11A b.55.1.2 26985 1jztA 246 1.94e+01 c.104.1.1 63319 1cvrA 435 2.05e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1kmvA 186 2.07e+01 c.71.1.1 72757 1nsf 273 2.13e+01 1d2nA c.37.1.20 32429 1rtu 114 2.22e+01 9rnt d.1.1.4 36139 1nf2A 268 2.27e+01 c.108.1.10 91849 1e79A 510 2.55e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1yifA 533 2.59e+01 1fib 269 2.65e+01 3fib d.171.1.1 42456 1ro7A 259 2.69e+01 c.130.1.1 97667 1q8iA 783 2.84e+01 c.55.3.5,e.8.1.1 96208,96209 1treA 255 2.89e+01 1amk c.1.1.1 28505 1itkA 731 2.90e+01 a.93.1.3,a.93.1.3 71417,71418 2a35A 215 2.90e+01 2fhxA 246 2.99e+01 1xk5A 204 2.99e+01 2ck3A 510 3.00e+01 1qx4A 274 3.00e+01 b.43.4.2,c.25.1.1 104624,104625 1vl5A 260 3.01e+01 c.66.1.41 108720 1d2nA 272 3.01e+01 1d2nA c.37.1.20 32428 2apqA 139 3.02e+01 1cipA 353 3.14e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1bmfA 510 3.24e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18281,26446,32326 1tadA 324 3.37e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1ip9A 85 3.37e+01 1ip9A d.15.2.2 62638 1eq6A 189 3.39e+01 1eq6A d.107.1.1 40796 1h8eA 510 3.42e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1k77A 260 3.56e+01 c.1.15.5 72096 2gjsA 176 3.59e+01 2fn4A 181 3.60e+01 1a79A 171 3.64e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 1dzaA 129 3.72e+01 7rsa d.5.1.1 37275 1it2A 146 3.77e+01 a.1.1.2 66365 1wmsA 177 3.78e+01 c.37.1.8 109414 1azsC 388 4.00e+01 1cipA a.66.1.1,c.37.1.8 18203,32086 2f2lA 167 4.04e+01 1ycdA 243 4.14e+01 2fh7A 595 4.21e+01 1ako 268 4.30e+01 1ako d.151.1.1 41779 1kmqA 184 4.40e+01 c.37.1.8 84412 1sw6A 327 4.41e+01 1sw6A d.211.1.1 19176 1agp 166 4.49e+01 1ctqA c.37.1.8 31985 1s8fA 177 4.54e+01 c.37.1.8 105370 1as0 353 4.55e+01 1cipA a.66.1.1,c.37.1.8 18212,32095 2bycA 137 4.60e+01 1yy7A 213 4.61e+01 1sg4A 260 4.66e+01 1cc1S 283 4.69e+01 2frvA e.19.1.1 43313 1umkA 275 4.69e+01 1xppA 115 4.70e+01 2bv9A 290 4.81e+01 1xxbA 78 4.91e+01 1xxaA d.74.2.1 39706 1tag 324 4.98e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1b9bA 255 5.01e+01 1amk c.1.1.1 28531 1gm7A 209 5.24e+01 d.153.1.2 65302 1kp9B 287 5.25e+01 c.66.1.18 68734 1h6gA 256 5.35e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 1ctqA 166 5.43e+01 1ctqA c.37.1.8 31965 1xwiA 322 5.47e+01 1heiA 451 5.52e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1xxaA 78 5.62e+01 1xxaA d.74.2.1 39700 1huqA 164 5.69e+01 1byuA c.37.1.8 32020 1hqz9 141 5.74e+01 1b1cA 181 5.78e+01 1amoA c.23.5.2 31212 1pyaB 228 5.85e+01 1pyaB 1k0hA 117 5.89e+01 b.106.1.2 71975 1kum 108 5.94e+01 1kum b.3.1.1 22525 1zthA 258 5.94e+01 1gdhA 320 6.01e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1bmc 221 6.07e+01 1a7tA d.157.1.1 42038 1bsmA 201 6.33e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1ajqA 209 6.36e+01 1ajqA d.153.1.2 41840 1i0lA 221 6.37e+01 c.61.1.1 71096 1w0hA 204 6.47e+01 1ogiA 303 6.47e+01 b.43.4.2,c.25.1.1 92914,92915 1dfoA 417 6.55e+01 1bj4A c.67.1.4 34480 1tx4B 178 6.76e+01 1ctqA c.37.1.8 32045 1xreA 217 6.83e+01 2c2hA 192 6.86e+01 1yt5A 258 6.92e+01 2b25A 336 6.95e+01 1qcrA 446 6.96e+01 1be3A d.185.1.1,d.185.1.1 59025,59026 1ai7A 209 6.98e+01 1ajqA d.153.1.2 41845 2fj6A 82 7.06e+01 1xxcA 78 7.07e+01 1xxaA d.74.2.1 39712 2bzlA 325 7.29e+01 1ci6B 63 7.31e+01 1ci6B h.1.3.1 45549 1ewkA 490 7.35e+01 1ewkA c.93.1.1 35712 2eryA 172 7.50e+01 1ymqA 261 7.54e+01 1ujqA 305 7.58e+01 c.1.12.7 99463 2citA 282 7.65e+01 1qhlA 227 7.73e+01 1qhlA c.37.1.12 32382 1b9lA 120 7.79e+01 1b9lA d.96.1.3 40665 1h75A 81 7.82e+01 1h75A c.47.1.1 60716 1ibvB 229 7.83e+01 1sviA 195 7.88e+01 c.37.1.8 106048 1jlnA 297 7.88e+01 1pty c.45.1.2 63172 1e3aA 260 7.90e+01 1ajqA d.153.1.2 41838 1dy5A 124 8.04e+01 7rsa d.5.1.1 37163 5p21 166 8.04e+01 1ctqA c.37.1.8 31966 1b4bA 71 8.06e+01 1b4aA d.74.2.1 39718 1i7pA 274 8.23e+01 b.43.4.2,c.25.1.1 66048,66049 1gheA 177 8.26e+01 d.108.1.1 76222 1w34A 304 8.37e+01 1zhvA 134 8.54e+01 1zjcA 418 8.56e+01 1tidB 119 8.63e+01 c.13.2.1 107000 1oi0A 124 8.71e+01 c.97.3.1 93045 1hqz1 141 8.74e+01 1d3bB 91 8.77e+01 1d3bB b.38.1.1 24804 1frvA 264 8.84e+01 2frvA e.19.1.1 43308 1vmiA 355 8.85e+01 1gk9A 260 8.87e+01 d.153.1.2 65246 1a9xB 379 8.89e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1uj2A 252 8.94e+01 c.37.1.6 99452 1pzrA 60 8.98e+01 a.38.2.1 95468 1pnkA 209 8.99e+01 1ajqA d.153.1.2 41839 1k5nA 276 8.99e+01 b.1.1.2,d.19.1.1 77266,77267