# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1elqA 390 1.78e+00 1elqA c.67.1.3 34436 1eluA 390 1.78e+00 1elqA c.67.1.3 34434 1eluB 390 1.79e+00 1elqA c.67.1.3 34435 1a8p 258 1.82e+00 1fdr b.43.4.2,c.25.1.1 25654,31544 2admA 421 2.12e+00 2admA c.66.1.27 34238 1nxiA 132 2.38e+00 d.58.47.1 86381 1aqjA 421 2.66e+00 2admA c.66.1.27 34242 1yyaA 250 2.79e+00 1lxjA 104 5.48e+00 d.58.48.1 84736 1a9xB 379 5.65e+00 1c3oB c.8.3.1,c.23.16.1 30732,31409 1cs0B 382 5.67e+00 1c3oB c.8.3.1,c.23.16.1 30740,31417 1aoxA 203 5.96e+00 1aoxA c.62.1.1 34151 1c3oB 382 7.16e+00 1c3oB c.8.3.1,c.23.16.1 30744,31421 1icrA 217 7.76e+00 1vfrA d.90.1.1 62274 1ykiA 217 7.77e+00 1r5rA 119 8.34e+00 a.39.2.1 97104 1c30B 382 8.42e+00 c.8.3.1,c.23.16.1 30736,31413 1zwwA 256 8.63e+00 1w2fA 276 9.55e+00 d.143.1.3 109125 1dfaA 454 1.00e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1jkmB 361 1.03e+01 1jkmA c.69.1.2 34634 1x11A 172 1.04e+01 1x11A b.55.1.2 26985 2f1fA 164 1.13e+01 1j5sA 463 1.14e+01 c.1.9.8 71580 1gtdA 85 1.16e+01 d.284.1.1 76344 1v7pC 200 1.20e+01 c.62.1.1 108408 1zsqA 528 1.31e+01 1ibrB 462 1.33e+01 1qgrA a.118.1.1 19120 1zelA 298 1.38e+01 1lw3A 657 1.43e+01 b.55.1.8,c.45.1.3 91152,91153 1vk8A 106 1.50e+01 d.58.48.1 108636 2azpA 318 1.55e+01 1yb5A 351 1.56e+01 1que 303 1.65e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1ogiA 303 1.69e+01 b.43.4.2,c.25.1.1 92914,92915 1pvvA 315 1.71e+01 c.78.1.1,c.78.1.1 95190,95191 1vpi 122 1.72e+01 1poa a.133.1.2 19559 1o5hA 214 1.75e+01 a.191.1.1 92497 1w34A 304 1.80e+01 1qh0A 295 1.80e+01 b.43.4.2,c.25.1.1 68891,68892 1go2A 304 1.80e+01 b.43.4.2,c.25.1.1 76243,76244 1b2rA 304 1.80e+01 1fnc b.43.4.2,c.25.1.1 25648,31538 1v8gA 329 1.82e+01 a.46.2.1,c.27.1.1 100505,100506 1jb9A 316 1.85e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1xxsA 122 1.89e+01 1aqcA 172 1.92e+01 1x11A b.55.1.2 26983 1ve3A 227 1.92e+01 2bsaA 303 1.93e+01 1jltA 122 1.96e+01 a.133.1.2 66867 2b5oA 402 2.10e+01 1yb2A 275 2.10e+01 1y4lA 121 2.13e+01 1xccA 220 2.14e+01 1azsC 388 2.37e+01 1cipA a.66.1.1,c.37.1.8 18203,32086 1necA 216 2.38e+01 1vfrA d.90.1.1 40249 1a1s 314 2.43e+01 1othA c.78.1.1,c.78.1.1 35258,35259 1tx4B 178 2.51e+01 1ctqA c.37.1.8 32045 1kmqA 184 2.54e+01 c.37.1.8 84412 1ek4A 418 2.55e+01 1dd8A c.95.1.1,c.95.1.1 59436,59437 1ewkA 490 2.60e+01 1ewkA c.93.1.1 35712 3kinB 117 3.07e+01 3kinB 1kuxA 207 3.14e+01 d.108.1.1 73021 2fbhA 146 3.14e+01 1dd8A 406 3.21e+01 1dd8A c.95.1.1,c.95.1.1 35932,35933 1i0lA 221 3.21e+01 c.61.1.1 71096 1jb0D 138 3.30e+01 1jb0D d.187.1.1 62823 1kvkA 395 3.36e+01 d.14.1.5,d.58.26.3 73060,73061 1ck7A 631 3.37e+01 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 2bywA 418 3.43e+01 2c2hA 192 3.43e+01 1treA 255 3.61e+01 1amk c.1.1.1 28505 1c2pA 576 3.74e+01 1quvA e.8.1.4 43117 1k87A 669 3.80e+01 a.176.1.1,c.1.23.2 77286,77287 1q8iA 783 3.89e+01 c.55.3.5,e.8.1.1 96208,96209 1yt3A 375 3.93e+01 1mh1 186 4.09e+01 1eesA c.37.1.8 32002 2bl0C 142 4.12e+01 1e9lA 377 4.13e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 2kinB 100 4.27e+01 3kinB 1vdeA 454 4.38e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1e9rA 437 4.53e+01 c.37.1.11 64827 1tqyB 415 4.55e+01 c.95.1.1,c.95.1.1 107247,107248 1fe8A 196 4.56e+01 1atzA c.62.1.1 59783 1atzB 189 4.63e+01 1atzA c.62.1.1 34133 1v2yA 105 4.64e+01 d.15.1.1 100275 1vqoR 155 4.69e+01 1vf8A 377 4.70e+01 1jztA 246 4.71e+01 c.104.1.1 63319 1mjgM 729 4.75e+01 e.26.1.3 79204 1jkmA 358 4.78e+01 1jkmA c.69.1.2 34633 1cjwA 166 4.90e+01 1cjwA d.108.1.1 40818 1kbpA 432 4.96e+01 4kbpA b.1.12.1,d.159.1.1 22349,42068 1k77A 260 5.03e+01 c.1.15.5 72096 1tc1A 220 5.10e+01 1tc1A c.61.1.1 34083 1ywmA 200 5.25e+01 1avmA 201 5.27e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1io2A 213 5.27e+01 1ekeA c.55.3.1 62612 1mbxC 106 5.32e+01 d.45.1.2 78929 2bv5A 282 5.39e+01 1ub0A 258 5.42e+01 c.72.1.2 88394 1aokA 122 5.45e+01 1poa a.133.1.2 19560 1qd1A 325 5.45e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1zd9A 188 5.51e+01 1b7aA 186 5.51e+01 1a44 b.17.1.1 23705 1a44 185 5.68e+01 1a44 b.17.1.1 23704 1atzA 189 5.69e+01 1atzA c.62.1.1 34132 1iqpA 327 5.89e+01 a.80.1.1,c.37.1.20 62649,62650 1as0 353 6.16e+01 1cipA a.66.1.1,c.37.1.8 18212,32095 2bijA 305 6.30e+01 1bsmA 201 6.34e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1jeoA 180 6.37e+01 c.80.1.3 66611 1kb0A 677 6.54e+01 a.3.1.6,b.70.1.1 68378,68379 1jvpP 298 6.63e+01 d.144.1.7 67371 1ao3A 187 6.65e+01 1atzA c.62.1.1 34134 1sra 151 6.72e+01 1sra a.39.1.3 17190 1e1xA 299 6.81e+01 1hcl d.144.1.7 59157 1t0hB 224 6.85e+01 c.37.1.1 106208 1mc2A 122 6.94e+01 a.133.1.2 74622 2apqA 139 7.06e+01 1e0zA 128 7.06e+01 1awd d.15.4.1 59153 1bx1A 314 7.15e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1r6oC 106 7.18e+01 1rm4A 337 7.37e+01 c.2.1.3,d.81.1.1 105000,105001 1bam 213 7.40e+01 1bam c.52.1.3 33285 1gq6A 313 7.48e+01 c.42.1.1 70341 1gz8A 299 7.51e+01 d.144.1.7 83405 1lxnA 99 7.58e+01 d.58.48.1 84737 2f8aA 208 7.63e+01 1e1dA 553 7.68e+01 1e1dA e.26.1.1 43363 1e2uA 553 7.73e+01 1e1dA e.26.1.1 43362 1gntA 553 7.73e+01 e.26.1.1 70290 1se0A 116 7.75e+01 g.52.1.1 98814 1cipA 353 7.92e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1qg0A 308 8.07e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1hcl 298 8.09e+01 1hcl d.144.1.7 41593 1m6sA 347 8.10e+01 c.67.1.1 78701 1jg8A 347 8.12e+01 1jg8A c.67.1.1 62946 1fnc 314 8.13e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1esgA 213 8.19e+01 1bam c.52.1.3 33286 1fnd 314 8.20e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1ogsA 497 8.22e+01 b.71.1.2,c.1.8.3 86997,86998 1eesA 178 8.26e+01 1eesA c.37.1.8 32073 1tyfA 193 8.27e+01 1tyfA c.14.1.1 30885 1hfc 169 8.33e+01 1hfc d.92.1.11 40335 1azvA 153 8.34e+01 1mfmA b.1.8.1 22247 2fh7A 595 8.44e+01 1zq1A 438 8.55e+01 1rr9A 200 8.58e+01 d.14.1.10 97783 1qx4A 274 8.65e+01 b.43.4.2,c.25.1.1 104624,104625 1fnb 314 8.69e+01 1fnc b.43.4.2,c.25.1.1 25628,31518 1svsA 353 8.69e+01 c.37.1.8 106051 2bl0B 145 8.72e+01 1nh1A 330 8.88e+01 e.45.1.1 91871